Wall clock time and date at job start Tue Mar 31 2020 11:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46429 * 110.99405 * 2 1 4 4 C 1.53384 * 108.65544 * 178.87309 * 3 2 1 5 5 C 1.53043 * 107.92118 * 291.73862 * 4 3 2 6 6 C 1.50801 * 109.64972 * 47.32616 * 5 4 3 7 7 C 1.38620 * 118.12652 * 164.50557 * 6 5 4 8 8 C 1.38048 * 120.49233 * 179.71355 * 7 6 5 9 9 C 1.50690 * 120.05847 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.47213 * 89.99978 * 9 8 7 11 11 C 1.34778 * 120.00555 * 179.97438 * 10 9 8 12 12 O 1.21589 * 119.99325 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00341 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99747 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47064 * 180.02562 * 14 13 11 16 16 C 1.50694 * 109.47545 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99737 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00337 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99941 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00134 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47326 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47342 * 120.00036 * 20 18 16 23 23 H 1.48509 * 109.47360 * 239.99860 * 20 18 16 24 24 C 1.38317 * 119.88581 * 359.96669 * 8 7 6 25 25 C 1.37804 * 119.95213 * 0.21318 * 24 8 7 26 26 C 1.38375 * 122.01473 * 344.39787 * 6 5 4 27 27 H 1.08998 * 109.46991 * 289.30115 * 1 2 3 28 28 H 1.08999 * 109.47524 * 49.30759 * 1 2 3 29 29 H 1.08996 * 109.46877 * 169.31112 * 1 2 3 30 30 H 1.09000 * 109.60363 * 59.12227 * 3 2 1 31 31 H 1.08995 * 109.74774 * 298.70774 * 3 2 1 32 32 H 1.08999 * 109.76956 * 172.13749 * 4 3 2 33 33 H 1.08993 * 109.81968 * 51.37389 * 4 3 2 34 34 H 1.08997 * 109.44599 * 287.27035 * 5 4 3 35 35 H 1.09004 * 109.41361 * 167.35807 * 5 4 3 36 36 H 1.08007 * 119.75088 * 359.69511 * 7 6 5 37 37 H 1.09003 * 109.47595 * 210.00465 * 9 8 7 38 38 H 1.09002 * 109.47212 * 330.00570 * 9 8 7 39 39 H 0.97000 * 119.99793 * 0.02562 * 10 9 8 40 40 H 0.97002 * 119.99858 * 359.97438 * 13 11 10 41 41 H 1.09002 * 109.47479 * 299.99634 * 14 13 11 42 42 H 1.08997 * 109.47473 * 60.00354 * 14 13 11 43 43 H 1.09006 * 109.47075 * 300.00160 * 15 14 13 44 44 H 1.09001 * 109.47236 * 59.99752 * 15 14 13 45 45 H 0.96996 * 119.99978 * 179.97438 * 19 18 16 46 46 H 1.08001 * 120.02437 * 180.10007 * 24 8 7 47 47 H 1.07997 * 119.78915 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9936 1.3671 0.0000 4 6 3.5259 1.3046 0.0286 5 6 3.9495 0.7561 1.3931 6 6 3.1328 -0.4678 1.7234 7 6 3.5766 -1.2936 2.7445 8 6 2.8636 -2.4237 3.0914 9 6 3.3554 -3.3148 4.2027 10 7 2.7887 -2.8649 5.4765 11 6 3.0911 -3.5171 6.6165 12 8 3.8348 -4.4786 6.5877 13 7 2.5693 -3.1035 7.7883 14 6 2.8986 -3.8121 9.0275 15 6 2.1807 -3.1453 10.2025 16 6 2.5198 -3.8737 11.4773 17 1 3.1811 -4.7273 11.4520 18 6 1.9861 -3.4506 12.6761 19 7 1.1813 -2.4108 12.7071 20 14 2.4060 -4.3540 14.2562 21 1 3.3244 -5.4810 13.9531 22 1 3.0658 -3.4178 15.2015 23 1 1.1612 -4.8820 14.8704 24 6 1.6970 -2.7365 2.4174 25 6 1.2515 -1.9223 1.3988 26 6 1.9687 -0.7785 1.0429 27 1 -0.3633 0.3397 0.9699 28 1 -0.3634 0.6700 -0.7792 29 1 -0.3633 -1.0098 -0.1906 30 1 1.6327 1.8973 0.8813 31 1 1.6655 1.8875 -0.8998 32 1 3.9383 2.3038 -0.1112 33 1 3.8837 0.6444 -0.7614 34 1 3.7875 1.5172 2.1563 35 1 5.0062 0.4901 1.3645 36 1 4.4872 -1.0512 3.2723 37 1 3.0450 -4.3417 4.0093 38 1 4.4433 -3.2672 4.2521 39 1 2.1951 -2.0981 5.4993 40 1 1.9763 -2.3362 7.8112 41 1 2.5777 -4.8508 8.9484 42 1 3.9756 -3.7760 9.1915 43 1 2.5011 -2.1064 10.2818 44 1 1.1037 -3.1817 10.0383 45 1 0.8056 -2.1133 13.5504 46 1 1.1366 -3.6191 2.6881 47 1 0.3400 -2.1688 0.8746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273022268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:17 Heat of formation + Delta-G solvation = -35.069141 kcal Electronic energy + Delta-G solvation = -25280.320545 eV Core-core repulsion = 21654.172864 eV Total energy + Delta-G solvation = -3626.147681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.61428 -40.90694 -38.37767 -36.64695 -35.51410 -35.30625 -34.78846 -32.14141 -31.15613 -30.84777 -27.96510 -27.52341 -26.26513 -24.74943 -23.61492 -22.88683 -22.52054 -21.95672 -20.28258 -19.37239 -18.42057 -17.93641 -17.37383 -17.26443 -16.65637 -16.49326 -16.40185 -15.56973 -15.45893 -15.34306 -15.23806 -15.02751 -14.69432 -14.50161 -14.32028 -14.27399 -14.07175 -13.46690 -13.29067 -13.19656 -12.99321 -12.93094 -12.77139 -12.51063 -12.43695 -12.22993 -12.06542 -11.73083 -11.67419 -11.49279 -11.42243 -11.22717 -10.74790 -10.60588 -10.34235 -9.72087 -9.67003 -8.63428 -8.23594 -6.33653 0.27891 0.43264 1.41631 1.42450 1.55873 1.83725 2.18006 2.41747 2.62398 2.91900 3.11148 3.48347 3.63043 3.74268 3.86759 3.92836 4.05720 4.20216 4.34958 4.36585 4.48117 4.50072 4.53112 4.53824 4.58690 4.62065 4.68219 4.74973 4.85053 4.87980 4.94905 5.00839 5.01826 5.18539 5.21658 5.30687 5.32254 5.37927 5.47344 5.53286 5.60376 5.68099 5.79775 5.79974 6.05645 6.08171 6.18151 6.31613 6.79813 7.13515 7.35606 7.60723 8.88569 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.001923 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.340513 B =14560.238330 C =14800.188930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.507 5.507 3 C 0.052 3.948 4 C -0.119 4.119 5 C -0.080 4.080 6 C -0.139 4.139 7 C -0.075 4.075 8 C -0.140 4.140 9 C 0.190 3.810 10 N -0.728 5.728 11 C 0.698 3.302 12 O -0.640 6.640 13 N -0.734 5.734 14 C 0.160 3.840 15 C 0.024 3.976 16 C -0.545 4.545 17 H 0.059 0.941 18 C 0.005 3.995 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.078 4.078 25 C -0.170 4.170 26 C 0.126 3.874 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.408 0.592 40 H 0.406 0.594 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.009 0.991 44 H 0.009 0.991 45 H 0.266 0.734 46 H 0.132 0.868 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 10.553 -30.548 32.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.220 5.220 3 C -0.073 4.073 4 C -0.157 4.157 5 C -0.117 4.117 6 C -0.142 4.142 7 C -0.094 4.094 8 C -0.141 4.141 9 C 0.066 3.934 10 N -0.385 5.385 11 C 0.398 3.602 12 O -0.522 6.522 13 N -0.388 5.388 14 C 0.036 3.964 15 C -0.014 4.014 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.193 4.193 19 N -0.567 5.567 20 Si 0.791 3.209 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.097 4.097 25 C -0.190 4.190 26 C 0.027 3.973 27 H 0.056 0.944 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.243 0.757 40 H 0.241 0.759 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.074 0.926 46 H 0.150 0.850 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.150 9.646 -30.962 32.431 hybrid contribution -0.642 0.415 1.667 1.834 sum -0.791 10.061 -29.296 30.985 Atomic orbital electron populations 1.22617 0.83652 1.04221 1.01898 1.58143 1.09777 1.14004 1.40107 1.22294 0.96019 0.86500 1.02532 1.21717 0.94420 1.02788 0.96773 1.20583 0.99131 0.94024 0.98006 1.19754 0.97231 0.99419 0.97814 1.21021 0.99422 0.93059 0.95947 1.19557 0.97632 0.97690 0.99267 1.19892 0.97657 0.96572 0.79243 1.45082 1.53358 1.35099 1.04941 1.16172 0.80496 0.82434 0.81135 1.90859 1.43112 1.31479 1.86790 1.45225 1.52335 1.35534 1.05741 1.21074 0.98554 0.94931 0.81845 1.19133 0.95096 0.95557 0.91599 1.21499 1.29137 1.14703 0.92973 0.92266 1.25888 0.94720 0.95887 1.02830 1.70068 1.32666 1.26379 1.27548 0.85377 0.78237 0.78644 0.78660 1.18959 1.20208 1.20224 1.21016 0.94844 0.99176 0.94670 1.21301 1.02044 0.95675 1.00022 1.18853 0.94533 0.94586 0.89375 0.94387 0.88948 0.89892 0.93594 0.88035 0.88414 0.91445 0.90220 0.89908 0.85322 0.91674 0.91789 0.75650 0.75861 0.93826 0.93824 0.97315 0.97307 0.92560 0.84995 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.82 127.69 1.13 1.33 16 2 N -0.51 -6.99 4.78 -720.64 -3.44 -10.43 16 3 C 0.05 0.54 5.46 86.52 0.47 1.01 16 4 C -0.12 -1.18 6.19 30.74 0.19 -0.99 16 5 C -0.08 -1.01 5.81 29.89 0.17 -0.84 16 6 C -0.14 -2.39 5.74 -19.71 -0.11 -2.50 16 7 C -0.08 -1.39 9.29 22.32 0.21 -1.18 16 8 C -0.14 -2.74 5.24 -19.89 -0.10 -2.85 16 9 C 0.19 4.51 5.80 85.63 0.50 5.01 16 10 N -0.73 -19.09 5.55 -482.31 -2.68 -21.76 16 11 C 0.70 25.17 8.57 179.05 1.53 26.71 16 12 O -0.64 -28.60 16.34 -4.00 -0.07 -28.67 16 13 N -0.73 -26.74 5.56 -478.54 -2.66 -29.40 16 14 C 0.16 7.15 5.61 86.38 0.48 7.64 16 15 C 0.02 1.22 5.09 29.85 0.15 1.37 16 16 C -0.54 -30.84 9.11 25.60 0.23 -30.60 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 18 C 0.01 0.30 5.46 84.65 0.46 0.76 16 19 N -0.93 -54.69 13.29 21.45 0.28 -54.41 16 20 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 C -0.08 -1.41 9.69 22.19 0.22 -1.19 16 25 C -0.17 -2.84 9.03 22.50 0.20 -2.64 16 26 C 0.13 2.16 5.81 38.30 0.22 2.38 16 27 H 0.04 0.40 8.12 -2.39 -0.02 0.38 16 28 H 0.09 0.57 8.06 -2.39 -0.02 0.55 16 29 H 0.08 0.72 6.31 -2.39 -0.02 0.71 16 30 H 0.05 0.49 8.11 -2.39 -0.02 0.47 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 36 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.06 1.64 8.09 -2.39 -0.02 1.62 16 38 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 39 H 0.41 8.65 8.48 -92.71 -0.79 7.86 16 40 H 0.41 12.61 8.49 -92.71 -0.79 11.83 16 41 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 46 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 47 H 0.14 1.85 5.98 -2.91 -0.02 1.83 16 Total: -1.00 -71.11 382.25 -1.18 -72.28 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.60 Total: 22.91 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.95 Total: 3.42 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -8.50 Total: -116.01 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.07 Total: -28.67 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -71.11 -1.18 -72.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273022268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.214 kcal (2) G-P(sol) polarization free energy of solvation -71.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds