Wall clock time and date at job start Tue Mar 31 2020 11:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00197 * 2 1 4 4 C 1.52780 * 109.42208 * 187.11391 * 3 2 1 5 5 N 1.47085 * 108.76809 * 306.42105 * 4 3 2 6 6 C 1.34774 * 120.88329 * 231.12397 * 5 4 3 7 7 O 1.21582 * 119.99773 * 184.61945 * 6 5 4 8 8 N 1.34776 * 120.00138 * 4.62084 * 6 5 4 9 9 C 1.46498 * 120.00073 * 175.03052 * 8 6 5 10 10 C 1.52996 * 109.47017 * 179.72355 * 9 8 6 11 11 C 1.50701 * 109.47049 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00048 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00201 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00020 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00243 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46899 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46995 * 120.00099 * 15 13 11 18 18 H 1.48504 * 109.47018 * 240.00040 * 15 13 11 19 19 C 1.47082 * 118.23081 * 50.85444 * 5 4 3 20 20 H 1.09000 * 109.63251 * 68.79791 * 19 5 4 21 21 C 1.50701 * 109.62582 * 189.37783 * 19 5 4 22 22 C 1.38241 * 119.99860 * 59.54187 * 21 19 5 23 23 C 1.38232 * 119.99826 * 179.78391 * 22 21 19 24 24 C 1.38237 * 120.00126 * 0.45018 * 23 22 21 25 25 C 1.38238 * 120.00120 * 359.80367 * 24 23 22 26 26 C 1.38234 * 119.99695 * 359.97438 * 25 24 23 27 27 C 1.46898 * 111.00051 * 124.30005 * 2 1 3 28 28 H 1.09001 * 109.47144 * 295.69611 * 1 2 3 29 29 H 1.09002 * 109.47222 * 55.69889 * 1 2 3 30 30 H 1.09002 * 109.47407 * 175.69639 * 1 2 3 31 31 H 1.08998 * 109.49163 * 307.21228 * 3 2 1 32 32 H 1.09003 * 109.49140 * 67.29537 * 3 2 1 33 33 H 1.09002 * 109.55645 * 186.61269 * 4 3 2 34 34 H 1.08998 * 109.45873 * 66.17918 * 4 3 2 35 35 H 0.97000 * 119.99637 * 354.75467 * 8 6 5 36 36 H 1.08997 * 109.46835 * 299.72381 * 9 8 6 37 37 H 1.08999 * 109.46853 * 59.72293 * 9 8 6 38 38 H 1.09003 * 109.47590 * 300.00107 * 10 9 8 39 39 H 1.08999 * 109.47360 * 60.00248 * 10 9 8 40 40 H 0.97002 * 120.00494 * 179.97438 * 14 13 11 41 41 H 1.07998 * 120.00326 * 0.02562 * 22 21 19 42 42 H 1.08003 * 120.00288 * 180.26936 * 23 22 21 43 43 H 1.08001 * 120.00218 * 179.82989 * 24 23 22 44 44 H 1.07994 * 120.00235 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00387 * 179.97438 * 26 25 24 46 46 H 1.09008 * 109.48999 * 52.78421 * 27 2 1 47 47 H 1.09003 * 109.51895 * 292.72017 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5123 1.3333 -0.1784 5 7 4.0870 0.4460 0.8442 6 6 5.1056 0.8582 1.6245 7 8 5.6239 0.0848 2.4065 8 7 5.5497 2.1278 1.5380 9 6 6.5820 2.6071 2.4603 10 6 6.9083 4.0684 2.1457 11 6 7.9706 4.5613 3.0941 12 1 8.3732 3.8985 3.8458 13 6 8.4295 5.8582 3.0015 14 7 7.9404 6.6650 2.0852 15 14 9.7469 6.4690 4.1766 16 1 10.1284 5.3744 5.1047 17 1 10.9391 6.8997 3.4031 18 1 9.2207 7.6185 4.9559 19 6 3.5163 -0.9011 0.9968 20 1 3.7561 -1.5018 0.1195 21 6 4.0820 -1.5535 2.2319 22 6 3.8994 -0.9653 3.4695 23 6 4.4143 -1.5661 4.6030 24 6 5.1199 -2.7502 4.4978 25 6 5.3070 -3.3356 3.2596 26 6 4.7881 -2.7372 2.1267 27 6 1.9954 -0.7728 1.1329 28 1 -0.3633 0.4456 0.9260 29 1 -0.3634 0.5791 -0.8489 30 1 -0.3634 -1.0248 -0.0771 31 1 1.5457 1.9337 -0.8183 32 1 1.7556 1.8531 0.9479 33 1 3.9188 2.3379 -0.0617 34 1 3.7517 0.9514 -1.1709 35 1 5.1886 2.7228 0.8624 36 1 6.2186 2.5284 3.4849 37 1 7.4809 2.0014 2.3461 38 1 7.2716 4.1472 1.1210 39 1 6.0093 4.6742 2.2600 40 1 8.2629 7.5775 2.0203 41 1 3.3511 -0.0385 3.5514 42 1 4.2680 -1.1089 5.5705 43 1 5.5246 -3.2181 5.3830 44 1 5.8585 -4.2605 3.1773 45 1 4.9345 -3.1943 1.1592 46 1 1.5455 -1.7657 1.1362 47 1 1.7555 -0.2617 2.0653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273195990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:05 Heat of formation + Delta-G solvation = 27.952670 kcal Electronic energy + Delta-G solvation = -27308.613653 eV Core-core repulsion = 23685.198803 eV Total energy + Delta-G solvation = -3623.414850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82790 -38.44928 -38.13046 -35.02098 -34.52165 -33.18842 -32.28736 -30.59851 -29.74386 -29.18744 -28.25176 -25.04244 -24.29231 -24.04839 -22.48761 -21.57649 -21.22335 -20.69131 -19.20924 -17.86804 -16.61667 -16.42001 -15.99376 -15.55978 -15.41952 -15.18246 -15.12755 -14.57488 -14.46984 -14.37824 -14.14863 -13.73423 -13.40207 -13.07808 -12.95414 -12.81425 -12.62854 -12.29265 -12.16673 -11.93473 -11.89274 -11.55860 -11.46273 -11.11244 -11.04501 -10.80464 -10.70074 -10.60397 -10.31842 -9.97283 -9.57067 -9.26488 -8.94571 -8.70580 -8.46473 -8.33182 -8.17657 -7.79224 -6.09133 -4.11477 1.62479 1.78473 2.89684 3.28463 3.36113 3.41637 3.51310 3.67374 4.06761 4.29194 4.44907 4.62971 4.70223 4.76867 4.94559 5.01848 5.05544 5.17953 5.23957 5.28154 5.28806 5.29891 5.35869 5.41128 5.52136 5.56773 5.60560 5.76196 5.77793 5.93995 6.22808 6.28292 6.32868 6.41796 6.52529 6.65983 6.67677 6.74531 6.79002 6.81840 6.88350 7.04344 7.21263 7.33360 7.56728 7.63733 7.90305 8.26150 8.40563 8.93800 9.03578 9.53338 11.02586 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.003604 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.921724 B = 7767.549952 C = 9467.779704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.039 3.961 4 C 0.116 3.884 5 N -0.635 5.635 6 C 0.695 3.305 7 O -0.563 6.563 8 N -0.741 5.741 9 C 0.142 3.858 10 C 0.013 3.987 11 C -0.519 4.519 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.210 3.790 20 H 0.083 0.917 21 C -0.052 4.052 22 C -0.052 4.052 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.111 4.111 27 C 0.049 3.951 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.389 0.611 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.087 0.913 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.695 -16.199 -4.447 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.090 4.090 4 C -0.008 4.008 5 N -0.374 5.374 6 C 0.397 3.603 7 O -0.441 6.441 8 N -0.397 5.397 9 C 0.020 3.980 10 C -0.024 4.024 11 C -0.557 4.557 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 C 0.106 3.894 20 H 0.101 0.899 21 C -0.053 4.053 22 C -0.071 4.071 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.130 4.130 27 C -0.080 4.080 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.225 0.775 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.106 0.894 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.111 -16.766 -4.338 22.984 hybrid contribution 0.345 1.411 0.921 1.720 sum -14.766 -15.355 -3.417 21.575 Atomic orbital electron populations 1.22362 0.86831 1.02389 1.00637 1.61913 1.07946 1.13591 1.43217 1.22451 0.95506 0.89513 1.01522 1.21608 0.92292 0.94621 0.92266 1.47443 1.36168 1.15107 1.38728 1.16079 0.80218 0.82946 0.81046 1.91050 1.59443 1.52544 1.41035 1.45799 1.44180 1.10915 1.38761 1.21539 0.88070 0.97502 0.90934 1.19317 0.97156 0.88212 0.97738 1.21088 1.21164 0.96920 1.16573 0.92216 1.24991 0.96823 0.96799 0.95678 1.69965 1.43086 1.06581 1.33741 0.86470 0.81474 0.78806 0.80905 1.19569 1.20933 1.20955 1.19898 0.90793 0.82527 0.96165 0.89930 1.19268 0.98021 0.94661 0.93313 1.20558 0.97473 0.96945 0.92128 1.20868 0.99334 0.96051 0.97970 1.20942 0.99436 0.96316 0.97207 1.20860 1.00738 1.00057 0.92781 1.20687 0.98503 0.95743 0.98087 1.22576 0.94466 0.98997 0.91991 0.95582 0.91137 0.91198 0.89332 0.94118 0.89549 0.90633 0.77525 0.93081 0.92801 0.96039 0.96142 0.92941 0.87959 0.87032 0.87027 0.86918 0.86981 0.89444 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.58 60.06 0.58 0.76 16 2 N -0.54 -5.09 4.88 -242.90 -1.19 -6.27 16 3 C 0.04 0.36 5.60 -3.94 -0.02 0.34 16 4 C 0.12 1.25 6.56 -3.84 -0.03 1.22 16 5 N -0.63 -8.71 3.01 -172.21 -0.52 -9.22 16 6 C 0.70 12.20 7.68 -86.92 -0.67 11.53 16 7 O -0.56 -11.43 11.58 5.29 0.06 -11.37 16 8 N -0.74 -13.34 5.47 -65.23 -0.36 -13.70 16 9 C 0.14 3.09 5.62 -4.05 -0.02 3.07 16 10 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 11 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 15 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.21 2.60 3.25 -68.64 -0.22 2.38 16 20 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 21 C -0.05 -0.73 2.92 -104.62 -0.31 -1.03 16 22 C -0.05 -0.79 6.03 -39.58 -0.24 -1.03 16 23 C -0.12 -1.82 10.04 -39.58 -0.40 -2.21 16 24 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 25 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 26 C -0.11 -1.51 9.63 -39.58 -0.38 -1.89 16 27 C 0.05 0.50 4.81 -3.70 -0.02 0.48 16 28 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.67 8.06 -51.93 -0.42 0.25 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.91 5.64 -51.93 -0.29 0.61 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.39 6.20 5.97 -40.82 -0.24 5.95 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.10 1.58 7.42 -52.49 -0.39 1.19 16 42 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.11 1.30 7.95 -52.49 -0.42 0.88 16 46 H 0.09 0.78 8.11 -51.92 -0.42 0.36 16 47 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -32.12 372.22 -11.33 -43.45 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.58 Total: 4.03 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.07 Total: -3.57 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -1.32 Total: -54.63 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.06 Total: -11.37 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.12 -11.33 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273195990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.399 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds