Wall clock time and date at job start Tue Mar 31 2020 11:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00197 * 2 1 4 4 C 1.52780 * 109.42208 * 187.11391 * 3 2 1 5 5 N 1.47085 * 108.76809 * 306.42105 * 4 3 2 6 6 C 1.34774 * 120.88329 * 231.12397 * 5 4 3 7 7 O 1.21582 * 119.99773 * 184.61945 * 6 5 4 8 8 N 1.34776 * 120.00138 * 4.62084 * 6 5 4 9 9 C 1.46498 * 120.00073 * 175.03052 * 8 6 5 10 10 C 1.52996 * 109.47017 * 179.72355 * 9 8 6 11 11 C 1.50701 * 109.47049 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00048 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00201 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00020 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00243 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46899 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46995 * 120.00099 * 15 13 11 18 18 H 1.48504 * 109.47018 * 240.00040 * 15 13 11 19 19 C 1.47082 * 118.23081 * 50.85444 * 5 4 3 20 20 H 1.09000 * 109.63251 * 68.79791 * 19 5 4 21 21 C 1.50701 * 109.62582 * 189.37783 * 19 5 4 22 22 C 1.38241 * 119.99860 * 59.54187 * 21 19 5 23 23 C 1.38232 * 119.99826 * 179.78391 * 22 21 19 24 24 C 1.38237 * 120.00126 * 0.45018 * 23 22 21 25 25 C 1.38238 * 120.00120 * 359.80367 * 24 23 22 26 26 C 1.38234 * 119.99695 * 359.97438 * 25 24 23 27 27 C 1.46898 * 111.00051 * 124.30005 * 2 1 3 28 28 H 1.09001 * 109.47144 * 295.69611 * 1 2 3 29 29 H 1.09002 * 109.47222 * 55.69889 * 1 2 3 30 30 H 1.09002 * 109.47407 * 175.69639 * 1 2 3 31 31 H 1.08998 * 109.49163 * 307.21228 * 3 2 1 32 32 H 1.09003 * 109.49140 * 67.29537 * 3 2 1 33 33 H 1.09002 * 109.55645 * 186.61269 * 4 3 2 34 34 H 1.08998 * 109.45873 * 66.17918 * 4 3 2 35 35 H 0.97000 * 119.99637 * 354.75467 * 8 6 5 36 36 H 1.08997 * 109.46835 * 299.72381 * 9 8 6 37 37 H 1.08999 * 109.46853 * 59.72293 * 9 8 6 38 38 H 1.09003 * 109.47590 * 300.00107 * 10 9 8 39 39 H 1.08999 * 109.47360 * 60.00248 * 10 9 8 40 40 H 0.97002 * 120.00494 * 179.97438 * 14 13 11 41 41 H 1.07998 * 120.00326 * 0.02562 * 22 21 19 42 42 H 1.08003 * 120.00288 * 180.26936 * 23 22 21 43 43 H 1.08001 * 120.00218 * 179.82989 * 24 23 22 44 44 H 1.07994 * 120.00235 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00387 * 179.97438 * 26 25 24 46 46 H 1.09008 * 109.48999 * 52.78421 * 27 2 1 47 47 H 1.09003 * 109.51895 * 292.72017 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5123 1.3333 -0.1784 5 7 4.0870 0.4460 0.8442 6 6 5.1056 0.8582 1.6245 7 8 5.6239 0.0848 2.4065 8 7 5.5497 2.1278 1.5380 9 6 6.5820 2.6071 2.4603 10 6 6.9083 4.0684 2.1457 11 6 7.9706 4.5613 3.0941 12 1 8.3732 3.8985 3.8458 13 6 8.4295 5.8582 3.0015 14 7 7.9404 6.6650 2.0852 15 14 9.7469 6.4690 4.1766 16 1 10.1284 5.3744 5.1047 17 1 10.9391 6.8997 3.4031 18 1 9.2207 7.6185 4.9559 19 6 3.5163 -0.9011 0.9968 20 1 3.7561 -1.5018 0.1195 21 6 4.0820 -1.5535 2.2319 22 6 3.8994 -0.9653 3.4695 23 6 4.4143 -1.5661 4.6030 24 6 5.1199 -2.7502 4.4978 25 6 5.3070 -3.3356 3.2596 26 6 4.7881 -2.7372 2.1267 27 6 1.9954 -0.7728 1.1329 28 1 -0.3633 0.4456 0.9260 29 1 -0.3634 0.5791 -0.8489 30 1 -0.3634 -1.0248 -0.0771 31 1 1.5457 1.9337 -0.8183 32 1 1.7556 1.8531 0.9479 33 1 3.9188 2.3379 -0.0617 34 1 3.7517 0.9514 -1.1709 35 1 5.1886 2.7228 0.8624 36 1 6.2186 2.5284 3.4849 37 1 7.4809 2.0014 2.3461 38 1 7.2716 4.1472 1.1210 39 1 6.0093 4.6742 2.2600 40 1 8.2629 7.5775 2.0203 41 1 3.3511 -0.0385 3.5514 42 1 4.2680 -1.1089 5.5705 43 1 5.5246 -3.2181 5.3830 44 1 5.8585 -4.2605 3.1773 45 1 4.9345 -3.1943 1.1592 46 1 1.5455 -1.7657 1.1362 47 1 1.7555 -0.2617 2.0653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273195990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:04 Heat of formation + Delta-G solvation = 7.787760 kcal Electronic energy + Delta-G solvation = -27309.488069 eV Core-core repulsion = 23685.198803 eV Total energy + Delta-G solvation = -3624.289266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97327 -39.62750 -39.10690 -36.63247 -35.61517 -34.93531 -33.60981 -31.66453 -31.35530 -30.30344 -29.21088 -26.75141 -25.31836 -25.03987 -23.52674 -23.19095 -22.21672 -22.12419 -20.43656 -19.05931 -18.48504 -17.64293 -17.27204 -16.68653 -16.52481 -16.40295 -16.10318 -15.99641 -15.70202 -15.55259 -15.33526 -14.97031 -14.84710 -14.29071 -14.23390 -14.12142 -13.77638 -13.54558 -13.18788 -13.06002 -12.91568 -12.79770 -12.72830 -12.52193 -12.37580 -12.26382 -12.23617 -11.84379 -11.69765 -11.62123 -11.43939 -11.12815 -10.61639 -10.20431 -9.65894 -9.54978 -9.25887 -8.97839 -8.24961 -6.35127 0.56048 0.70124 1.39912 1.40892 1.53928 1.69850 2.22243 2.39704 2.84519 2.90561 3.09784 3.14963 3.72104 3.85089 3.85545 4.05540 4.13477 4.21624 4.25429 4.30686 4.32842 4.47279 4.51429 4.54518 4.62559 4.66035 4.69454 4.75317 4.75947 4.85787 4.87218 4.99963 5.05270 5.21838 5.27540 5.31069 5.46826 5.53530 5.58201 5.65981 5.74729 5.77722 5.80590 5.87744 5.94093 6.06955 6.16787 6.29194 6.77862 7.03007 7.34255 7.64635 8.87132 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.003604 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.921724 B = 7767.549952 C = 9467.779704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.628 5.628 6 C 0.692 3.308 7 O -0.593 6.593 8 N -0.739 5.739 9 C 0.167 3.833 10 C 0.026 3.974 11 C -0.545 4.545 12 H 0.057 0.943 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.964 3.036 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.208 3.792 20 H 0.094 0.906 21 C -0.059 4.059 22 C -0.068 4.068 23 C -0.143 4.143 24 C -0.131 4.131 25 C -0.132 4.132 26 C -0.122 4.122 27 C 0.057 3.943 28 H 0.022 0.978 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.400 0.600 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.266 0.734 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.103 0.897 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.163 -17.038 -5.180 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.086 4.086 4 C -0.012 4.012 5 N -0.367 5.367 6 C 0.394 3.606 7 O -0.472 6.472 8 N -0.396 5.396 9 C 0.043 3.957 10 C -0.012 4.012 11 C -0.583 4.583 12 H 0.075 0.925 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.788 3.212 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.201 1.201 19 C 0.105 3.895 20 H 0.111 0.889 21 C -0.060 4.060 22 C -0.087 4.087 23 C -0.161 4.161 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.140 4.140 27 C -0.072 4.072 28 H 0.041 0.959 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.237 0.763 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.150 0.850 46 H 0.122 0.878 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -15.633 -17.619 -5.110 24.102 hybrid contribution 0.435 1.627 1.107 2.016 sum -15.198 -15.992 -4.002 22.422 Atomic orbital electron populations 1.22434 0.85287 1.03404 1.01060 1.61953 1.09288 1.13271 1.42373 1.22444 0.94432 0.89873 1.01813 1.21842 0.93285 0.94122 0.91943 1.47475 1.34893 1.16051 1.38246 1.16181 0.80862 0.82282 0.81266 1.91032 1.60661 1.53187 1.42363 1.45518 1.43763 1.11690 1.38635 1.20956 0.88456 0.95266 0.91027 1.19106 0.95855 0.89884 0.96335 1.21466 1.22155 0.97496 1.17202 0.92515 1.25846 0.98972 0.96907 0.97299 1.70060 1.44311 1.07044 1.35112 0.85413 0.78656 0.78314 0.78770 1.19092 1.20159 1.20113 1.20081 0.91994 0.81644 0.95811 0.88862 1.19467 0.98062 0.95026 0.93485 1.20555 0.98217 0.96821 0.93063 1.21099 0.99929 0.96864 0.98226 1.21240 0.99217 0.96058 0.98413 1.21234 1.00390 1.00845 0.92496 1.21032 0.98093 0.95685 0.99229 1.22467 0.93012 0.99913 0.91763 0.95937 0.89741 0.90111 0.86880 0.95471 0.89578 0.89128 0.76302 0.94275 0.94260 0.97499 0.97476 0.92529 0.89371 0.86600 0.85072 0.84468 0.85016 0.87846 0.95431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.58 127.69 1.22 1.54 16 2 N -0.54 -9.04 4.88 -922.40 -4.51 -13.55 16 3 C 0.04 0.73 5.60 86.23 0.48 1.21 16 4 C 0.11 2.23 6.56 86.19 0.57 2.79 16 5 N -0.63 -16.84 3.01 -817.01 -2.46 -19.30 16 6 C 0.69 24.47 7.68 179.06 1.37 25.85 16 7 O -0.59 -24.44 11.58 -3.97 -0.05 -24.49 16 8 N -0.74 -27.03 5.47 -478.56 -2.62 -29.65 16 9 C 0.17 7.47 5.62 86.38 0.49 7.95 16 10 C 0.03 1.32 5.09 29.85 0.15 1.47 16 11 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 12 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 13 C 0.01 0.48 5.46 84.65 0.46 0.94 16 14 N -0.93 -54.41 13.29 21.45 0.28 -54.13 16 15 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 C 0.21 4.94 3.25 44.21 0.14 5.08 16 20 H 0.09 2.04 7.90 -2.39 -0.02 2.02 16 21 C -0.06 -1.66 2.92 -19.86 -0.06 -1.71 16 22 C -0.07 -2.10 6.03 22.27 0.13 -1.97 16 23 C -0.14 -4.27 10.04 22.27 0.22 -4.05 16 24 C -0.13 -3.52 10.05 22.27 0.22 -3.29 16 25 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 26 C -0.12 -3.17 9.63 22.27 0.21 -2.95 16 27 C 0.06 1.10 4.81 86.38 0.42 1.52 16 28 H 0.02 0.29 8.14 -2.39 -0.02 0.28 16 29 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 1.39 8.06 -2.39 -0.02 1.37 16 32 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.09 1.73 5.64 -2.39 -0.01 1.72 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.40 12.82 5.97 -92.71 -0.55 12.26 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.09 2.88 7.42 -2.91 -0.02 2.86 16 42 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 43 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 44 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 45 H 0.13 2.80 7.95 -2.91 -0.02 2.77 16 46 H 0.10 1.66 8.11 -2.38 -0.02 1.64 16 47 H 0.03 0.62 7.18 -2.39 -0.02 0.60 16 Total: -1.00 -68.97 372.22 -0.42 -69.39 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.40 Total: 25.06 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 6.50 Total: 0.63 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -9.29 Total: -116.62 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -68.97 -0.42 -69.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273195990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.173 kcal (2) G-P(sol) polarization free energy of solvation -68.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds