Wall clock time and date at job start Tue Mar 31 2020 11:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00316 * 2 1 4 4 C 1.46899 * 110.99551 * 123.95610 * 2 1 3 5 5 C 1.53122 * 109.52034 * 174.99908 * 4 2 1 6 6 C 1.53040 * 109.27719 * 177.61841 * 5 4 2 7 7 N 1.46845 * 109.52612 * 300.81960 * 6 5 4 8 8 C 1.39548 * 111.00231 * 185.84022 * 7 6 5 9 9 C 1.39120 * 119.99031 * 180.02562 * 8 7 6 10 10 C 1.37877 * 120.00876 * 179.97438 * 9 8 7 11 11 C 1.39196 * 119.98789 * 359.97438 * 10 9 8 12 12 N 1.39405 * 120.00409 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99746 * 146.70162 * 12 11 10 14 14 O 1.21802 * 120.00030 * 354.59069 * 13 12 11 15 15 C 1.41639 * 120.00067 * 174.85695 * 13 12 11 16 16 H 1.07999 * 120.00097 * 0.02562 * 15 13 12 17 17 C 1.40148 * 120.00206 * 179.97438 * 15 13 12 18 18 N 1.30626 * 119.99817 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00180 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47053 * 60.00274 * 19 17 15 21 21 H 1.48493 * 109.47223 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47272 * 300.00278 * 19 17 15 23 23 C 1.39191 * 119.98304 * 0.25763 * 11 10 9 24 24 C 1.37878 * 119.99059 * 359.50509 * 23 11 10 25 25 C 1.46849 * 111.19679 * 61.74205 * 7 6 5 26 26 C 1.53039 * 109.52355 * 298.25952 * 25 7 6 27 27 H 1.08996 * 109.47153 * 296.05235 * 1 2 3 28 28 H 1.08998 * 109.47069 * 56.04799 * 1 2 3 29 29 H 1.08999 * 109.47420 * 176.04396 * 1 2 3 30 30 H 1.08996 * 109.47020 * 183.95229 * 3 2 1 31 31 H 1.09003 * 109.46960 * 303.95228 * 3 2 1 32 32 H 1.09000 * 109.47122 * 63.95224 * 3 2 1 33 33 H 1.08994 * 109.52798 * 54.87235 * 4 2 1 34 34 H 1.08996 * 109.50362 * 57.67823 * 5 4 2 35 35 H 1.08997 * 109.53759 * 297.58036 * 5 4 2 36 36 H 1.09003 * 109.46258 * 180.80156 * 6 5 4 37 37 H 1.08996 * 109.45483 * 60.83259 * 6 5 4 38 38 H 1.07998 * 119.99512 * 0.02562 * 9 8 7 39 39 H 1.07994 * 120.00470 * 179.97438 * 10 9 8 40 40 H 0.96996 * 120.00045 * 326.69865 * 12 11 10 41 41 H 0.96996 * 120.00163 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.00065 * 179.74875 * 23 11 10 43 43 H 1.07996 * 119.99163 * 180.21013 * 24 23 11 44 44 H 1.08994 * 109.46412 * 58.27492 * 25 7 6 45 45 H 1.09003 * 109.46350 * 178.24633 * 25 7 6 46 46 H 1.09005 * 109.50266 * 299.23897 * 26 25 7 47 47 H 1.08998 * 109.53463 * 179.14194 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 3.5209 -0.8495 1.0362 6 6 4.0680 -1.5970 2.2544 7 7 3.6791 -0.8886 3.4805 8 6 4.2713 -1.4691 4.6028 9 6 4.0278 -0.9437 5.8677 10 6 4.6124 -1.5173 6.9769 11 6 5.4458 -2.6225 6.8310 12 7 6.0374 -3.2024 7.9522 13 6 6.2540 -4.5322 7.9880 14 8 5.8448 -5.2404 7.0854 15 6 6.9524 -5.1069 9.0779 16 1 7.3112 -4.4796 9.8805 17 6 7.1772 -6.4897 9.1154 18 7 6.7429 -7.2485 8.1449 19 14 8.0977 -7.2477 10.5532 20 1 7.3631 -6.9694 11.8133 21 1 8.2031 -8.7156 10.3550 22 1 9.4594 -6.6606 10.6341 23 6 5.6930 -3.1450 5.5647 24 6 5.1041 -2.5738 4.4565 25 6 2.2185 -0.8374 3.6234 26 6 1.6161 -0.0671 2.4461 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3634 -1.0252 -0.0709 30 1 3.0828 1.3431 -0.0708 31 1 1.5899 1.9163 -0.8525 32 1 1.7044 1.8723 0.9233 33 1 1.5740 -1.7712 1.1261 34 1 3.9393 0.1566 1.0085 35 1 3.7972 -1.3836 0.1272 36 1 5.1552 -1.6458 2.1925 37 1 3.6598 -2.6075 2.2737 38 1 3.3802 -0.0869 5.9809 39 1 4.4236 -1.1091 7.9587 40 1 6.2932 -2.6489 8.7065 41 1 6.8987 -8.2056 8.1706 42 1 6.3428 -4.0001 5.4507 43 1 5.2932 -2.9812 3.4744 44 1 1.8190 -1.8514 3.6364 45 1 1.9622 -0.3342 4.5558 46 1 2.0046 0.9513 2.4406 47 1 0.5308 -0.0421 2.5440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274771913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:40 Heat of formation + Delta-G solvation = 9.528686 kcal Electronic energy + Delta-G solvation = -26344.161495 eV Core-core repulsion = 22719.947721 eV Total energy + Delta-G solvation = -3624.213774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37146 -38.97107 -37.66695 -35.97152 -33.43555 -32.46319 -31.58605 -31.37065 -30.06031 -27.98019 -27.87742 -26.30437 -24.97621 -23.83368 -22.51967 -21.61195 -20.92201 -19.71006 -19.36243 -17.50308 -17.26568 -16.05335 -15.95952 -15.62329 -15.34798 -15.21449 -14.78306 -14.42331 -14.07415 -13.94112 -13.89802 -13.60732 -13.32142 -12.94381 -12.68042 -12.56500 -12.40971 -12.33996 -12.09038 -11.99069 -11.87155 -11.60279 -11.27868 -11.17611 -11.14851 -11.03768 -10.98116 -10.62969 -10.59862 -10.37918 -10.26924 -9.66251 -8.99065 -8.52148 -8.39429 -8.30865 -7.68667 -6.67777 -6.36994 -4.89827 1.97644 2.06411 3.06549 3.11939 3.13811 3.66803 3.86996 3.98474 4.28478 4.53419 4.55702 4.65808 4.75865 4.81783 4.96897 4.99379 5.12093 5.18173 5.23566 5.31642 5.35818 5.41806 5.44826 5.52528 5.58200 5.60847 5.69048 5.71045 5.74358 5.77723 5.85589 5.96559 5.96892 6.07701 6.18576 6.22204 6.62506 6.65397 6.74320 6.77489 6.79561 7.16783 7.22561 7.26272 7.36013 7.65728 7.90035 8.06119 8.27286 8.80360 9.32158 10.39160 10.60586 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036498 B = 0.002312 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.974569 B =12108.717877 C =12413.514643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.540 5.540 3 C 0.017 3.983 4 C 0.081 3.919 5 C -0.109 4.109 6 C 0.052 3.948 7 N -0.484 5.484 8 C 0.055 3.945 9 C -0.116 4.116 10 C -0.158 4.158 11 C 0.177 3.823 12 N -0.703 5.703 13 C 0.544 3.456 14 O -0.568 6.568 15 C -0.540 4.540 16 H 0.069 0.931 17 C 0.088 3.912 18 N -0.748 5.748 19 Si 0.913 3.087 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.105 4.105 24 C -0.144 4.144 25 C 0.062 3.938 26 C -0.151 4.151 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.391 0.609 41 H 0.273 0.727 42 H 0.138 0.862 43 H 0.119 0.881 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.849 14.629 -11.814 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.262 5.262 3 C -0.131 4.131 4 C -0.027 4.027 5 C -0.147 4.147 6 C -0.076 4.076 7 N -0.200 5.200 8 C -0.042 4.042 9 C -0.137 4.137 10 C -0.180 4.180 11 C 0.077 3.923 12 N -0.346 5.346 13 C 0.353 3.647 14 O -0.452 6.452 15 C -0.575 4.575 16 H 0.087 0.913 17 C -0.135 4.135 18 N -0.376 5.376 19 Si 0.737 3.263 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.127 4.127 24 C -0.165 4.165 25 C -0.064 4.064 26 C -0.190 4.190 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.224 0.776 41 H 0.084 0.916 42 H 0.155 0.845 43 H 0.137 0.863 44 H 0.058 0.942 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.824 14.114 -13.024 21.135 hybrid contribution -0.028 -0.415 2.004 2.047 sum -8.852 13.699 -11.020 19.684 Atomic orbital electron populations 1.22400 0.87646 1.02225 1.00476 1.62251 1.07711 1.14058 1.42215 1.22482 1.01294 0.88971 1.00403 1.21830 0.95859 0.97396 0.87624 1.21689 0.93782 1.01781 0.97429 1.22221 1.01270 0.95495 0.88575 1.59160 1.08092 1.51367 1.01431 1.18658 1.00780 0.94699 0.90109 1.20332 1.02253 1.00294 0.90780 1.20754 0.99499 0.99470 0.98273 1.17964 0.93012 0.92981 0.88338 1.44124 1.63469 1.10221 1.16811 1.17001 0.80877 0.78474 0.88332 1.90660 1.54784 1.59104 1.40653 1.20004 1.37117 0.93122 1.07248 0.91269 1.25764 0.94220 0.97140 0.96383 1.69999 1.33081 1.05602 1.28878 0.86344 0.80395 0.78068 0.81519 1.19074 1.20362 1.19041 1.21207 1.00668 1.00451 0.90336 1.21118 1.01244 0.95300 0.98882 1.22111 0.86325 0.99353 0.98628 1.22296 1.00164 1.01011 0.95511 0.95293 0.91555 0.91454 0.90878 0.91790 0.95040 0.90137 0.90851 0.90566 0.89668 0.93784 0.86746 0.86542 0.77646 0.91620 0.84459 0.86324 0.94184 0.90264 0.90639 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.32 60.06 0.56 0.72 16 2 N -0.54 -4.82 5.01 -243.04 -1.22 -6.04 16 3 C 0.02 0.13 8.82 60.06 0.53 0.66 16 4 C 0.08 0.78 2.29 -67.59 -0.16 0.62 16 5 C -0.11 -1.08 5.24 -26.65 -0.14 -1.22 16 6 C 0.05 0.63 4.14 -3.83 -0.02 0.61 16 7 N -0.48 -6.52 4.70 -171.06 -0.80 -7.32 16 8 C 0.05 0.89 5.65 -83.69 -0.47 0.42 16 9 C -0.12 -1.87 9.15 -39.39 -0.36 -2.23 16 10 C -0.16 -2.80 9.96 -39.36 -0.39 -3.19 16 11 C 0.18 3.76 6.28 -83.71 -0.53 3.23 16 12 N -0.70 -16.03 5.31 -12.41 -0.07 -16.10 16 13 C 0.54 15.16 7.30 -14.96 -0.11 15.05 16 14 O -0.57 -17.79 12.57 5.10 0.06 -17.72 16 15 C -0.54 -14.72 9.31 -37.57 -0.35 -15.07 16 16 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 17 C 0.09 2.36 5.50 -17.35 -0.10 2.27 16 18 N -0.75 -21.60 11.73 55.56 0.65 -20.94 16 19 Si 0.91 19.36 29.56 -169.99 -5.02 14.33 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 23 C -0.11 -2.28 8.64 -39.36 -0.34 -2.62 16 24 C -0.14 -2.61 8.81 -39.39 -0.35 -2.96 16 25 C 0.06 0.74 5.26 -3.83 -0.02 0.72 16 26 C -0.15 -1.45 4.69 -26.65 -0.12 -1.57 16 27 H 0.03 0.21 6.51 -51.93 -0.34 -0.13 16 28 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.58 6.28 -51.93 -0.33 0.26 16 31 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.03 0.25 6.23 -51.93 -0.32 -0.08 16 33 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 34 H 0.07 0.74 6.31 -51.93 -0.33 0.41 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.04 6.97 -51.93 -0.36 0.68 16 37 H 0.04 0.56 7.73 -51.93 -0.40 0.16 16 38 H 0.11 1.57 7.14 -52.49 -0.37 1.20 16 39 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.39 7.63 8.77 -40.82 -0.36 7.28 16 41 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 42 H 0.14 3.40 6.43 -52.48 -0.34 3.06 16 43 H 0.12 1.92 5.79 -52.49 -0.30 1.62 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.92 6.69 -51.93 -0.35 0.57 16 46 H 0.08 0.75 6.27 -51.93 -0.33 0.43 16 47 H 0.07 0.59 6.66 -51.93 -0.35 0.24 16 LS Contribution 361.32 15.07 5.44 5.44 Total: -1.00 -32.16 361.32 -10.28 -42.44 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.97 Total: 10.48 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.36 Total: -4.57 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -1.43 Total: -50.40 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.06 Total: -17.72 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.16 -10.28 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274771913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.968 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds