Wall clock time and date at job start Tue Mar 31 2020 11:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00316 * 2 1 4 4 C 1.46899 * 110.99551 * 123.95610 * 2 1 3 5 5 C 1.53122 * 109.52034 * 174.99908 * 4 2 1 6 6 C 1.53040 * 109.27719 * 177.61841 * 5 4 2 7 7 N 1.46845 * 109.52612 * 300.81960 * 6 5 4 8 8 C 1.39548 * 111.00231 * 185.84022 * 7 6 5 9 9 C 1.39120 * 119.99031 * 180.02562 * 8 7 6 10 10 C 1.37877 * 120.00876 * 179.97438 * 9 8 7 11 11 C 1.39196 * 119.98789 * 359.97438 * 10 9 8 12 12 N 1.39405 * 120.00409 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99746 * 146.70162 * 12 11 10 14 14 O 1.21802 * 120.00030 * 354.59069 * 13 12 11 15 15 C 1.41639 * 120.00067 * 174.85695 * 13 12 11 16 16 H 1.07999 * 120.00097 * 0.02562 * 15 13 12 17 17 C 1.40148 * 120.00206 * 179.97438 * 15 13 12 18 18 N 1.30626 * 119.99817 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00180 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47053 * 60.00274 * 19 17 15 21 21 H 1.48493 * 109.47223 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47272 * 300.00278 * 19 17 15 23 23 C 1.39191 * 119.98304 * 0.25763 * 11 10 9 24 24 C 1.37878 * 119.99059 * 359.50509 * 23 11 10 25 25 C 1.46849 * 111.19679 * 61.74205 * 7 6 5 26 26 C 1.53039 * 109.52355 * 298.25952 * 25 7 6 27 27 H 1.08996 * 109.47153 * 296.05235 * 1 2 3 28 28 H 1.08998 * 109.47069 * 56.04799 * 1 2 3 29 29 H 1.08999 * 109.47420 * 176.04396 * 1 2 3 30 30 H 1.08996 * 109.47020 * 183.95229 * 3 2 1 31 31 H 1.09003 * 109.46960 * 303.95228 * 3 2 1 32 32 H 1.09000 * 109.47122 * 63.95224 * 3 2 1 33 33 H 1.08994 * 109.52798 * 54.87235 * 4 2 1 34 34 H 1.08996 * 109.50362 * 57.67823 * 5 4 2 35 35 H 1.08997 * 109.53759 * 297.58036 * 5 4 2 36 36 H 1.09003 * 109.46258 * 180.80156 * 6 5 4 37 37 H 1.08996 * 109.45483 * 60.83259 * 6 5 4 38 38 H 1.07998 * 119.99512 * 0.02562 * 9 8 7 39 39 H 1.07994 * 120.00470 * 179.97438 * 10 9 8 40 40 H 0.96996 * 120.00045 * 326.69865 * 12 11 10 41 41 H 0.96996 * 120.00163 * 179.97438 * 18 17 15 42 42 H 1.08004 * 120.00065 * 179.74875 * 23 11 10 43 43 H 1.07996 * 119.99163 * 180.21013 * 24 23 11 44 44 H 1.08994 * 109.46412 * 58.27492 * 25 7 6 45 45 H 1.09003 * 109.46350 * 178.24633 * 25 7 6 46 46 H 1.09005 * 109.50266 * 299.23897 * 26 25 7 47 47 H 1.08998 * 109.53463 * 179.14194 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 3.5209 -0.8495 1.0362 6 6 4.0680 -1.5970 2.2544 7 7 3.6791 -0.8886 3.4805 8 6 4.2713 -1.4691 4.6028 9 6 4.0278 -0.9437 5.8677 10 6 4.6124 -1.5173 6.9769 11 6 5.4458 -2.6225 6.8310 12 7 6.0374 -3.2024 7.9522 13 6 6.2540 -4.5322 7.9880 14 8 5.8448 -5.2404 7.0854 15 6 6.9524 -5.1069 9.0779 16 1 7.3112 -4.4796 9.8805 17 6 7.1772 -6.4897 9.1154 18 7 6.7429 -7.2485 8.1449 19 14 8.0977 -7.2477 10.5532 20 1 7.3631 -6.9694 11.8133 21 1 8.2031 -8.7156 10.3550 22 1 9.4594 -6.6606 10.6341 23 6 5.6930 -3.1450 5.5647 24 6 5.1041 -2.5738 4.4565 25 6 2.2185 -0.8374 3.6234 26 6 1.6161 -0.0671 2.4461 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3634 -1.0252 -0.0709 30 1 3.0828 1.3431 -0.0708 31 1 1.5899 1.9163 -0.8525 32 1 1.7044 1.8723 0.9233 33 1 1.5740 -1.7712 1.1261 34 1 3.9393 0.1566 1.0085 35 1 3.7972 -1.3836 0.1272 36 1 5.1552 -1.6458 2.1925 37 1 3.6598 -2.6075 2.2737 38 1 3.3802 -0.0869 5.9809 39 1 4.4236 -1.1091 7.9587 40 1 6.2932 -2.6489 8.7065 41 1 6.8987 -8.2056 8.1706 42 1 6.3428 -4.0001 5.4507 43 1 5.2932 -2.9812 3.4744 44 1 1.8190 -1.8514 3.6364 45 1 1.9622 -0.3342 4.5558 46 1 2.0046 0.9513 2.4406 47 1 0.5308 -0.0421 2.5440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274771913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:39 Heat of formation + Delta-G solvation = -13.304314 kcal Electronic energy + Delta-G solvation = -26345.151608 eV Core-core repulsion = 22719.947721 eV Total energy + Delta-G solvation = -3625.203887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51633 -40.40297 -39.07298 -37.33281 -35.13282 -34.43124 -32.72310 -32.52342 -31.34669 -29.62607 -28.50176 -27.93555 -25.99714 -24.93591 -23.63863 -23.03923 -22.22950 -21.31462 -20.27900 -19.39048 -18.55050 -17.65395 -17.50877 -16.75013 -16.55044 -16.12434 -15.88748 -15.56476 -15.40708 -15.21324 -15.12334 -14.71185 -14.69045 -14.42301 -14.11168 -14.04853 -13.58754 -13.45564 -13.16248 -13.03583 -12.89784 -12.79882 -12.72103 -12.62276 -12.62011 -12.12067 -12.07512 -12.00293 -11.99283 -11.57281 -11.30879 -11.18228 -10.91821 -10.05514 -9.78870 -9.67555 -9.18334 -8.38993 -8.24152 -7.01620 0.50238 0.57389 1.38480 1.41253 1.53984 2.20400 2.35007 2.69566 2.96604 3.05937 3.06841 3.65947 3.72976 3.80114 3.95405 4.05666 4.11206 4.16578 4.28448 4.33087 4.44623 4.46884 4.51820 4.56134 4.65255 4.67946 4.70356 4.75459 4.78142 4.81508 4.93396 4.99349 5.06657 5.08071 5.14990 5.19495 5.20844 5.26865 5.33553 5.41338 5.59922 5.76588 5.89248 6.09735 6.12054 6.14927 6.20167 6.27473 6.55497 6.72917 7.43056 8.39257 8.57401 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036498 B = 0.002312 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.974569 B =12108.717877 C =12413.514643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.549 5.549 3 C 0.017 3.983 4 C 0.084 3.916 5 C -0.100 4.100 6 C 0.050 3.950 7 N -0.480 5.480 8 C 0.071 3.929 9 C -0.110 4.110 10 C -0.143 4.143 11 C 0.137 3.863 12 N -0.697 5.697 13 C 0.530 3.470 14 O -0.617 6.617 15 C -0.567 4.567 16 H 0.091 0.909 17 C 0.030 3.970 18 N -0.802 5.802 19 Si 1.002 2.998 20 H -0.252 1.252 21 H -0.273 1.273 22 H -0.253 1.253 23 C -0.131 4.131 24 C -0.151 4.151 25 C 0.060 3.940 26 C -0.140 4.140 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.405 0.595 41 H 0.279 0.721 42 H 0.092 0.908 43 H 0.130 0.870 44 H 0.030 0.970 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.913 16.957 -11.360 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.131 4.131 4 C -0.025 4.025 5 C -0.138 4.138 6 C -0.078 4.078 7 N -0.197 5.197 8 C -0.027 4.027 9 C -0.131 4.131 10 C -0.164 4.164 11 C 0.039 3.961 12 N -0.342 5.342 13 C 0.339 3.661 14 O -0.504 6.504 15 C -0.602 4.602 16 H 0.109 0.891 17 C -0.188 4.188 18 N -0.431 5.431 19 Si 0.821 3.179 20 H -0.176 1.176 21 H -0.197 1.197 22 H -0.177 1.177 23 C -0.153 4.153 24 C -0.172 4.172 25 C -0.066 4.066 26 C -0.179 4.179 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.169 0.831 39 H 0.162 0.838 40 H 0.240 0.760 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.147 0.853 44 H 0.049 0.951 45 H 0.106 0.894 46 H 0.096 0.904 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.910 16.520 -12.590 23.014 hybrid contribution 0.203 -0.987 1.681 1.960 sum -9.707 15.533 -10.909 21.319 Atomic orbital electron populations 1.22442 0.86718 1.02476 1.01163 1.62244 1.08637 1.14646 1.41662 1.22506 1.01180 0.88453 1.00974 1.21750 0.95340 0.97309 0.88107 1.21607 0.94220 1.01584 0.96368 1.22275 1.01191 0.95414 0.88904 1.59202 1.09246 1.50453 1.00768 1.18866 0.99178 0.93133 0.91523 1.20722 1.01739 1.00741 0.89879 1.21009 0.97649 0.97526 1.00254 1.18212 0.95359 0.95029 0.87459 1.43654 1.63686 1.08921 1.17906 1.17375 0.80729 0.79963 0.88057 1.90616 1.56678 1.60916 1.42193 1.20552 1.37498 0.94346 1.07807 0.89137 1.27058 0.94668 0.97404 0.99640 1.70165 1.34902 1.06259 1.31727 0.85003 0.78971 0.76964 0.76995 1.17594 1.19731 1.17712 1.20972 1.01815 1.00201 0.92280 1.21194 1.01636 0.96032 0.98322 1.22211 0.84751 0.99374 1.00236 1.22219 1.00787 1.00563 0.94322 0.94865 0.90528 0.91545 0.91138 0.90743 0.94864 0.90885 0.90508 0.90010 0.90113 0.94587 0.83129 0.83788 0.76019 0.91122 0.89013 0.85263 0.95145 0.89386 0.90352 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 127.69 1.19 1.44 16 2 N -0.55 -8.53 5.01 -922.83 -4.62 -13.15 16 3 C 0.02 0.22 8.82 127.69 1.13 1.35 16 4 C 0.08 1.43 2.29 45.00 0.10 1.54 16 5 C -0.10 -1.82 5.24 30.65 0.16 -1.66 16 6 C 0.05 1.15 4.14 86.33 0.36 1.51 16 7 N -0.48 -12.04 4.70 -695.11 -3.26 -15.30 16 8 C 0.07 2.23 5.65 38.33 0.22 2.44 16 9 C -0.11 -3.28 9.15 22.40 0.20 -3.07 16 10 C -0.14 -4.86 9.96 22.41 0.22 -4.64 16 11 C 0.14 6.01 6.28 38.40 0.24 6.25 16 12 N -0.70 -32.94 5.31 -311.36 -1.65 -34.60 16 13 C 0.53 30.98 7.30 85.08 0.62 31.61 16 14 O -0.62 -41.23 12.57 -4.68 -0.06 -41.29 16 15 C -0.57 -31.75 9.31 23.57 0.22 -31.53 16 16 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 17 C 0.03 1.66 5.50 85.34 0.47 2.13 16 18 N -0.80 -48.32 11.73 21.85 0.26 -48.06 16 19 Si 1.00 39.86 29.56 68.60 2.03 41.89 16 20 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 21 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 23 C -0.13 -6.05 8.64 22.41 0.19 -5.85 16 24 C -0.15 -5.63 8.81 22.39 0.20 -5.43 16 25 C 0.06 1.28 5.26 86.33 0.45 1.73 16 26 C -0.14 -2.29 4.69 30.65 0.14 -2.15 16 27 H 0.03 0.39 6.51 -2.39 -0.02 0.37 16 28 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.96 6.28 -2.39 -0.02 0.94 16 31 H 0.07 0.82 8.12 -2.39 -0.02 0.81 16 32 H 0.03 0.43 6.23 -2.39 -0.01 0.41 16 33 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 34 H 0.08 1.38 6.31 -2.39 -0.02 1.36 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.94 6.97 -2.39 -0.02 1.92 16 37 H 0.04 0.90 7.73 -2.39 -0.02 0.88 16 38 H 0.15 3.44 7.14 -2.91 -0.02 3.42 16 39 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 40 H 0.40 16.06 8.77 -92.71 -0.81 15.24 16 41 H 0.28 15.14 8.29 -92.71 -0.77 14.37 16 42 H 0.09 5.04 6.43 -2.91 -0.02 5.02 16 43 H 0.13 4.39 5.79 -2.91 -0.02 4.37 16 44 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.09 1.72 6.69 -2.39 -0.02 1.71 16 46 H 0.08 1.29 6.27 -2.38 -0.01 1.28 16 47 H 0.08 1.15 6.66 -2.39 -0.02 1.14 16 Total: -1.00 -74.23 361.32 -1.02 -75.25 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: 0.18 Total: 39.61 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 6.12 Total: -4.35 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -9.28 Total: -111.11 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.06 Total: -41.29 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -74.23 -1.02 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274771913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.942 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds