Wall clock time and date at job start Tue Mar 31 2020 11:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46907 * 110.99856 * 2 1 4 4 C 1.46893 * 111.00242 * 123.95633 * 2 1 3 5 5 C 1.53008 * 109.47281 * 162.96740 * 4 2 1 6 6 N 1.46503 * 112.84645 * 316.32035 * 5 4 2 7 7 C 1.34774 * 120.00333 * 294.61972 * 6 5 4 8 8 O 1.21578 * 119.99868 * 5.13893 * 7 6 5 9 9 N 1.34771 * 120.00215 * 185.13354 * 7 6 5 10 10 C 1.39240 * 120.00371 * 185.57471 * 9 7 6 11 11 C 1.39481 * 119.83625 * 214.50092 * 10 9 7 12 12 C 1.36376 * 120.16857 * 180.22813 * 11 10 9 13 13 C 1.40869 * 119.82445 * 359.50168 * 12 11 10 14 14 C 1.41161 * 120.15984 * 180.24690 * 13 12 11 15 15 H 1.07999 * 119.99933 * 199.91856 * 14 13 12 16 16 C 1.39893 * 120.00319 * 19.92426 * 14 13 12 17 17 N 1.30883 * 119.99403 * 25.14055 * 16 14 13 18 18 Si 1.86793 * 120.00320 * 205.14159 * 16 14 13 19 19 H 1.48506 * 109.47147 * 84.99223 * 18 16 14 20 20 H 1.48500 * 109.47486 * 204.99187 * 18 16 14 21 21 H 1.48494 * 109.47246 * 324.99191 * 18 16 14 22 22 C 1.40865 * 119.67870 * 0.49920 * 13 12 11 23 23 C 1.36372 * 119.82638 * 359.74986 * 22 13 12 24 24 C 1.53777 * 113.61278 * 87.51349 * 5 4 2 25 25 C 1.54052 * 86.98718 * 140.02137 * 24 5 4 26 26 C 1.53777 * 113.61638 * 185.12331 * 5 4 2 27 27 H 1.09000 * 109.47193 * 296.04159 * 1 2 3 28 28 H 1.09004 * 109.47419 * 56.04454 * 1 2 3 29 29 H 1.09002 * 109.46966 * 176.04211 * 1 2 3 30 30 H 1.09001 * 109.46793 * 190.28892 * 3 2 1 31 31 H 1.08999 * 109.46918 * 310.28879 * 3 2 1 32 32 H 1.08997 * 109.46679 * 70.29320 * 3 2 1 33 33 H 1.09003 * 109.47432 * 42.97135 * 4 2 1 34 34 H 1.08994 * 109.47569 * 282.96719 * 4 2 1 35 35 H 0.97005 * 119.99842 * 114.62613 * 6 5 4 36 36 H 0.97006 * 119.99902 * 5.57363 * 9 7 6 37 37 H 1.07995 * 119.91379 * 359.95580 * 11 10 9 38 38 H 1.07994 * 120.08571 * 179.74795 * 12 11 10 39 39 H 0.97006 * 119.99543 * 180.02562 * 17 16 14 40 40 H 1.07996 * 120.09191 * 179.73617 * 22 13 12 41 41 H 1.08003 * 119.91952 * 179.97438 * 23 22 13 42 42 H 1.09001 * 113.61805 * 254.61822 * 24 5 4 43 43 H 1.09003 * 113.61379 * 25.51938 * 24 5 4 44 44 H 1.08994 * 113.62291 * 220.02429 * 25 24 5 45 45 H 1.09004 * 113.61187 * 89.11291 * 25 24 5 46 46 H 1.08996 * 113.61354 * 334.48715 * 26 5 4 47 47 H 1.08999 * 113.61556 * 105.38816 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4659 -1.1063 0.8864 6 7 3.7182 -1.5637 -0.4823 7 6 3.1822 -2.7220 -0.9154 8 8 2.4146 -3.3402 -0.2036 9 7 3.4970 -3.1949 -2.1375 10 6 2.8565 -4.3281 -2.6319 11 6 3.5566 -5.2240 -3.4397 12 6 2.9346 -6.3337 -3.9314 13 6 1.5846 -6.5792 -3.6127 14 6 0.9353 -7.7283 -4.1135 15 1 -0.1433 -7.7655 -4.1516 16 6 1.6891 -8.8188 -4.5602 17 7 2.8966 -9.0142 -4.0948 18 14 0.9722 -9.9960 -5.8210 19 1 1.2023 -9.4593 -7.1864 20 1 1.6310 -11.3206 -5.6923 21 1 -0.4867 -10.1439 -5.5867 22 6 0.8841 -5.6698 -2.7962 23 6 1.5181 -4.5619 -2.3162 24 6 4.4404 -0.0154 1.3608 25 6 5.3505 -1.1566 1.8532 26 6 4.0802 -2.0163 1.9631 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0696 1.3483 -0.1836 31 1 1.5052 1.9488 -0.7839 32 1 1.8021 1.8348 0.9675 33 1 1.4237 -1.6870 1.2512 34 1 1.9104 -0.1710 2.0467 35 1 4.2711 -1.0330 -1.0769 36 1 4.1699 -2.7458 -2.6728 37 1 4.5926 -5.0362 -3.6801 38 1 3.4768 -7.0244 -4.5601 39 1 3.4194 -9.7702 -4.4048 40 1 -0.1522 -5.8493 -2.5512 41 1 0.9823 -3.8634 -1.6904 42 1 4.8713 0.5688 0.5477 43 1 4.0438 0.6047 2.1648 44 1 5.8247 -0.9536 2.8134 45 1 6.0535 -1.5107 1.0992 46 1 3.5853 -1.9424 2.9314 47 1 4.2205 -3.0465 1.6360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281271915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:30 Heat of formation + Delta-G solvation = 27.942083 kcal Electronic energy + Delta-G solvation = -26986.569084 eV Core-core repulsion = 23363.153775 eV Total energy + Delta-G solvation = -3623.415309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54881 -38.77999 -37.01768 -36.53473 -34.24269 -33.12178 -32.33310 -29.45470 -28.90574 -28.27904 -27.74881 -25.73320 -24.90128 -23.75821 -21.90658 -21.18473 -20.77687 -19.93810 -19.01519 -17.77330 -17.17619 -16.48363 -15.89402 -15.63319 -15.25136 -15.12485 -14.77045 -14.31686 -14.24217 -13.91300 -13.81407 -13.11414 -12.91052 -12.66998 -12.53179 -12.36800 -12.28531 -12.16890 -11.97218 -11.83585 -11.71587 -11.29299 -11.18345 -11.06760 -11.01443 -10.89847 -10.66078 -10.56135 -10.33188 -9.91165 -9.53065 -9.27095 -8.99424 -8.76673 -8.63881 -8.28083 -7.41893 -6.92454 -6.69464 -4.17437 2.77248 3.09571 3.12622 3.15110 3.20293 3.29878 3.92604 3.94782 3.97262 4.33914 4.53241 4.67554 4.70788 4.76493 4.94621 5.12573 5.22047 5.28950 5.36646 5.45906 5.52107 5.56453 5.62434 5.72243 5.76491 5.81428 5.92678 5.96369 6.02433 6.16071 6.17864 6.30926 6.56159 6.86484 6.91587 6.99064 7.03120 7.12792 7.15175 7.24461 7.42688 7.51500 7.71172 8.03299 8.10998 8.16924 8.38645 8.68891 8.72261 8.96932 9.05051 9.36682 10.18762 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.002902 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.880541 B = 9647.292224 C =10276.762285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.532 5.532 3 C 0.024 3.976 4 C 0.056 3.944 5 C 0.188 3.812 6 N -0.717 5.717 7 C 0.706 3.294 8 O -0.576 6.576 9 N -0.670 5.670 10 C 0.014 3.986 11 C -0.114 4.114 12 C -0.163 4.163 13 C 0.104 3.896 14 C -0.461 4.461 15 H 0.078 0.922 16 C 0.079 3.921 17 N -0.783 5.783 18 Si 0.904 3.096 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.262 1.262 22 C -0.220 4.220 23 C -0.071 4.071 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.141 4.141 27 H 0.019 0.981 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.390 0.610 36 H 0.388 0.612 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.280 0.720 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 17.928 7.719 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.256 5.256 3 C -0.124 4.124 4 C -0.073 4.073 5 C 0.099 3.901 6 N -0.372 5.372 7 C 0.407 3.593 8 O -0.453 6.453 9 N -0.315 5.315 10 C -0.079 4.079 11 C -0.134 4.134 12 C -0.183 4.183 13 C 0.101 3.899 14 C -0.490 4.490 15 H 0.096 0.904 16 C -0.140 4.140 17 N -0.408 5.408 18 Si 0.728 3.272 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.186 1.186 22 C -0.240 4.240 23 C -0.091 4.091 24 C -0.178 4.178 25 C -0.176 4.176 26 C -0.180 4.180 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.109 0.891 34 H 0.054 0.946 35 H 0.223 0.777 36 H 0.220 0.780 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.829 16.959 7.959 19.122 hybrid contribution 0.109 0.297 -0.329 0.457 sum 3.937 17.257 7.630 19.275 Atomic orbital electron populations 1.22367 0.87388 1.02636 0.99681 1.61791 1.07557 1.12854 1.43354 1.22463 1.01029 0.89295 0.99616 1.22480 0.95854 0.98598 0.90357 1.20843 0.92684 0.94390 0.82193 1.44440 1.56401 1.23273 1.13089 1.15822 0.81088 0.80713 0.81672 1.90870 1.38775 1.59646 1.56004 1.42087 1.43469 1.29847 1.16139 1.16909 0.92121 0.90673 1.08183 1.20175 0.97010 0.94975 1.01265 1.20806 0.96343 0.96913 1.04257 1.17605 0.91886 0.91829 0.88544 1.19534 0.94688 0.98487 1.36305 0.90369 1.25925 0.94503 0.98217 0.95317 1.69917 1.10545 1.26499 1.33803 0.86404 0.80438 0.78833 0.81536 1.19162 1.20455 1.18630 1.20573 0.99450 0.98670 1.05338 1.20233 0.92382 0.97672 0.98819 1.23378 0.97205 0.96303 1.00898 1.22872 0.96747 0.96657 1.01359 1.23236 0.96021 1.00097 0.98643 0.96244 0.91697 0.91036 0.91431 0.91979 0.96173 0.89093 0.94605 0.77688 0.77990 0.89474 0.86485 0.90871 0.89005 0.88025 0.91062 0.89250 0.91465 0.90124 0.89694 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.52 60.06 0.57 0.89 16 2 N -0.53 -6.49 4.58 -251.26 -1.15 -7.64 16 3 C 0.02 0.23 9.09 60.07 0.55 0.77 16 4 C 0.06 0.70 4.21 -3.82 -0.02 0.69 16 5 C 0.19 2.18 0.48 -131.01 -0.06 2.12 16 6 N -0.72 -9.38 4.75 -51.66 -0.25 -9.63 16 7 C 0.71 12.75 7.76 -86.93 -0.67 12.08 16 8 O -0.58 -12.69 12.28 5.30 0.07 -12.62 16 9 N -0.67 -12.33 5.31 -14.10 -0.07 -12.41 16 10 C 0.01 0.32 6.27 -83.57 -0.52 -0.20 16 11 C -0.11 -2.69 9.90 -39.79 -0.39 -3.08 16 12 C -0.16 -4.30 8.70 -39.26 -0.34 -4.64 16 13 C 0.10 2.86 5.61 -106.80 -0.60 2.26 16 14 C -0.46 -12.52 9.01 -37.85 -0.34 -12.86 16 15 H 0.08 2.05 7.96 -52.49 -0.42 1.63 16 16 C 0.08 2.02 5.00 -17.34 -0.09 1.93 16 17 N -0.78 -20.48 11.11 55.55 0.62 -19.86 16 18 Si 0.90 18.81 29.63 -169.99 -5.04 13.77 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 C -0.22 -5.77 9.74 -39.26 -0.38 -6.15 16 23 C -0.07 -1.76 8.57 -39.79 -0.34 -2.10 16 24 C -0.14 -1.16 5.82 -25.78 -0.15 -1.31 16 25 C -0.14 -1.27 8.00 -25.77 -0.21 -1.47 16 26 C -0.14 -1.67 7.03 -25.92 -0.18 -1.86 16 27 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 29 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 30 H 0.07 0.58 6.09 -51.93 -0.32 0.26 16 31 H 0.06 0.55 8.01 -51.93 -0.42 0.13 16 32 H 0.02 0.17 7.97 -51.93 -0.41 -0.24 16 33 H 0.09 1.43 6.99 -51.93 -0.36 1.06 16 34 H 0.04 0.39 7.62 -51.93 -0.40 -0.01 16 35 H 0.39 4.12 8.69 -40.82 -0.35 3.76 16 36 H 0.39 5.73 8.84 -40.82 -0.36 5.37 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.12 3.14 6.09 -52.49 -0.32 2.82 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 41 H 0.10 2.52 6.48 -52.48 -0.34 2.18 16 42 H 0.07 0.52 7.50 -51.93 -0.39 0.13 16 43 H 0.09 0.65 7.90 -51.93 -0.41 0.24 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 47 H 0.08 1.21 7.55 -51.93 -0.39 0.82 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -31.03 374.46 -10.76 -41.79 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -7.40 Total: 13.90 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -3.18 Total: -12.94 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.85 Total: -49.54 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.07 Total: -12.62 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.04 Total: 13.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.03 -10.76 -41.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281271915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.728 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds