Wall clock time and date at job start Tue Mar 31 2020 11:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46907 * 110.99856 * 2 1 4 4 C 1.46893 * 111.00242 * 123.95633 * 2 1 3 5 5 C 1.53008 * 109.47281 * 162.96740 * 4 2 1 6 6 N 1.46503 * 112.84645 * 316.32035 * 5 4 2 7 7 C 1.34774 * 120.00333 * 294.61972 * 6 5 4 8 8 O 1.21578 * 119.99868 * 5.13893 * 7 6 5 9 9 N 1.34771 * 120.00215 * 185.13354 * 7 6 5 10 10 C 1.39240 * 120.00371 * 185.57471 * 9 7 6 11 11 C 1.39481 * 119.83625 * 214.50092 * 10 9 7 12 12 C 1.36376 * 120.16857 * 180.22813 * 11 10 9 13 13 C 1.40869 * 119.82445 * 359.50168 * 12 11 10 14 14 C 1.41161 * 120.15984 * 180.24690 * 13 12 11 15 15 H 1.07999 * 119.99933 * 199.91856 * 14 13 12 16 16 C 1.39893 * 120.00319 * 19.92426 * 14 13 12 17 17 N 1.30883 * 119.99403 * 25.14055 * 16 14 13 18 18 Si 1.86793 * 120.00320 * 205.14159 * 16 14 13 19 19 H 1.48506 * 109.47147 * 84.99223 * 18 16 14 20 20 H 1.48500 * 109.47486 * 204.99187 * 18 16 14 21 21 H 1.48494 * 109.47246 * 324.99191 * 18 16 14 22 22 C 1.40865 * 119.67870 * 0.49920 * 13 12 11 23 23 C 1.36372 * 119.82638 * 359.74986 * 22 13 12 24 24 C 1.53777 * 113.61278 * 87.51349 * 5 4 2 25 25 C 1.54052 * 86.98718 * 140.02137 * 24 5 4 26 26 C 1.53777 * 113.61638 * 185.12331 * 5 4 2 27 27 H 1.09000 * 109.47193 * 296.04159 * 1 2 3 28 28 H 1.09004 * 109.47419 * 56.04454 * 1 2 3 29 29 H 1.09002 * 109.46966 * 176.04211 * 1 2 3 30 30 H 1.09001 * 109.46793 * 190.28892 * 3 2 1 31 31 H 1.08999 * 109.46918 * 310.28879 * 3 2 1 32 32 H 1.08997 * 109.46679 * 70.29320 * 3 2 1 33 33 H 1.09003 * 109.47432 * 42.97135 * 4 2 1 34 34 H 1.08994 * 109.47569 * 282.96719 * 4 2 1 35 35 H 0.97005 * 119.99842 * 114.62613 * 6 5 4 36 36 H 0.97006 * 119.99902 * 5.57363 * 9 7 6 37 37 H 1.07995 * 119.91379 * 359.95580 * 11 10 9 38 38 H 1.07994 * 120.08571 * 179.74795 * 12 11 10 39 39 H 0.97006 * 119.99543 * 180.02562 * 17 16 14 40 40 H 1.07996 * 120.09191 * 179.73617 * 22 13 12 41 41 H 1.08003 * 119.91952 * 179.97438 * 23 22 13 42 42 H 1.09001 * 113.61805 * 254.61822 * 24 5 4 43 43 H 1.09003 * 113.61379 * 25.51938 * 24 5 4 44 44 H 1.08994 * 113.62291 * 220.02429 * 25 24 5 45 45 H 1.09004 * 113.61187 * 89.11291 * 25 24 5 46 46 H 1.08996 * 113.61354 * 334.48715 * 26 5 4 47 47 H 1.08999 * 113.61556 * 105.38816 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4659 -1.1063 0.8864 6 7 3.7182 -1.5637 -0.4823 7 6 3.1822 -2.7220 -0.9154 8 8 2.4146 -3.3402 -0.2036 9 7 3.4970 -3.1949 -2.1375 10 6 2.8565 -4.3281 -2.6319 11 6 3.5566 -5.2240 -3.4397 12 6 2.9346 -6.3337 -3.9314 13 6 1.5846 -6.5792 -3.6127 14 6 0.9353 -7.7283 -4.1135 15 1 -0.1433 -7.7655 -4.1516 16 6 1.6891 -8.8188 -4.5602 17 7 2.8966 -9.0142 -4.0948 18 14 0.9722 -9.9960 -5.8210 19 1 1.2023 -9.4593 -7.1864 20 1 1.6310 -11.3206 -5.6923 21 1 -0.4867 -10.1439 -5.5867 22 6 0.8841 -5.6698 -2.7962 23 6 1.5181 -4.5619 -2.3162 24 6 4.4404 -0.0154 1.3608 25 6 5.3505 -1.1566 1.8532 26 6 4.0802 -2.0163 1.9631 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0696 1.3483 -0.1836 31 1 1.5052 1.9488 -0.7839 32 1 1.8021 1.8348 0.9675 33 1 1.4237 -1.6870 1.2512 34 1 1.9104 -0.1710 2.0467 35 1 4.2711 -1.0330 -1.0769 36 1 4.1699 -2.7458 -2.6728 37 1 4.5926 -5.0362 -3.6801 38 1 3.4768 -7.0244 -4.5601 39 1 3.4194 -9.7702 -4.4048 40 1 -0.1522 -5.8493 -2.5512 41 1 0.9823 -3.8634 -1.6904 42 1 4.8713 0.5688 0.5477 43 1 4.0438 0.6047 2.1648 44 1 5.8247 -0.9536 2.8134 45 1 6.0535 -1.5107 1.0992 46 1 3.5853 -1.9424 2.9314 47 1 4.2205 -3.0465 1.6360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281271915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:29 Heat of formation + Delta-G solvation = 7.563576 kcal Electronic energy + Delta-G solvation = -26987.452762 eV Core-core repulsion = 23363.153775 eV Total energy + Delta-G solvation = -3624.298988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72410 -40.21836 -38.75343 -37.43071 -36.04568 -34.79523 -33.74170 -31.40986 -30.65709 -29.40173 -28.56165 -26.77978 -26.50897 -24.73155 -23.53243 -22.77385 -22.08004 -21.49323 -20.10186 -19.38633 -18.99492 -17.96973 -17.09133 -16.92619 -16.60666 -16.18958 -15.89475 -15.65273 -15.51794 -15.43371 -15.17928 -14.72524 -14.47171 -13.94703 -13.92038 -13.70091 -13.50757 -13.20954 -13.14271 -13.08288 -13.02933 -12.83675 -12.71717 -12.56660 -12.42521 -12.14126 -11.81265 -11.75120 -11.50486 -11.43537 -11.24555 -11.02117 -10.76121 -10.56853 -9.81660 -9.41806 -9.18054 -8.83977 -8.58887 -6.19908 0.92185 1.19129 1.39641 1.51493 1.53905 1.90862 2.22729 2.40722 2.77834 3.04475 3.43307 3.54149 3.78441 3.79517 3.93292 3.99616 4.28433 4.36620 4.42779 4.47948 4.52800 4.56956 4.65822 4.75436 4.79911 4.82252 4.94287 4.95788 4.97438 5.04571 5.09053 5.13978 5.17974 5.20050 5.24008 5.34205 5.36647 5.53534 5.68067 5.83999 5.86834 6.08593 6.10800 6.20484 6.26162 6.35543 6.43754 6.69050 6.95454 7.05823 7.35955 7.90621 8.30219 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.002902 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.880541 B = 9647.292224 C =10276.762285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.552 5.552 3 C 0.025 3.975 4 C 0.061 3.939 5 C 0.174 3.826 6 N -0.694 5.694 7 C 0.704 3.296 8 O -0.619 6.619 9 N -0.664 5.664 10 C 0.030 3.970 11 C -0.112 4.112 12 C -0.181 4.181 13 C 0.075 3.925 14 C -0.500 4.500 15 H 0.073 0.927 16 C 0.041 3.959 17 N -0.814 5.814 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.261 1.261 22 C -0.240 4.240 23 C -0.080 4.080 24 C -0.117 4.117 25 C -0.129 4.129 26 C -0.152 4.152 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.407 0.593 36 H 0.409 0.591 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.291 0.709 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 20.233 7.624 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.276 5.276 3 C -0.122 4.122 4 C -0.068 4.068 5 C 0.085 3.915 6 N -0.349 5.349 7 C 0.405 3.595 8 O -0.498 6.498 9 N -0.312 5.312 10 C -0.064 4.064 11 C -0.133 4.133 12 C -0.201 4.201 13 C 0.072 3.928 14 C -0.529 4.529 15 H 0.091 0.909 16 C -0.176 4.176 17 N -0.439 5.439 18 Si 0.802 3.198 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.260 4.260 23 C -0.100 4.100 24 C -0.154 4.154 25 C -0.166 4.166 26 C -0.191 4.191 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.243 0.757 36 H 0.245 0.755 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.128 0.872 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.709 19.344 7.875 21.652 hybrid contribution -0.432 -0.308 -0.166 0.556 sum 5.276 19.036 7.708 21.204 Atomic orbital electron populations 1.22296 0.87675 1.01008 1.00811 1.61777 1.07616 1.14811 1.43401 1.22516 1.01641 0.87496 1.00563 1.22359 0.95701 0.97185 0.91551 1.21159 0.93159 0.96165 0.80984 1.44233 1.55190 1.21448 1.14071 1.16005 0.80751 0.81659 0.81100 1.90859 1.40652 1.61198 1.57123 1.41893 1.43708 1.28847 1.16767 1.16925 0.91459 0.91479 1.06559 1.20429 0.98411 0.93928 1.00487 1.20830 0.96153 0.97989 1.05102 1.17916 0.92869 0.92591 0.89407 1.19752 0.94780 0.99680 1.38686 0.90920 1.26774 0.94765 0.99505 0.96551 1.69939 1.11765 1.27552 1.34599 0.85234 0.79495 0.76641 0.78444 1.18338 1.19051 1.18469 1.20685 0.99658 0.99547 1.06111 1.20283 0.93480 0.97356 0.98912 1.23321 0.94976 0.95367 1.01758 1.22835 0.95554 0.95816 1.02402 1.23306 0.98483 0.98176 0.99103 0.94874 0.90743 0.94059 0.90171 0.91477 0.94891 0.93433 0.92567 0.75681 0.75500 0.86153 0.87366 0.89847 0.89316 0.88536 0.88943 0.87211 0.89577 0.90382 0.88907 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.52 127.69 1.22 1.92 16 2 N -0.55 -12.73 4.58 -948.83 -4.34 -17.07 16 3 C 0.03 0.39 9.09 127.69 1.16 1.55 16 4 C 0.06 1.48 4.21 86.31 0.36 1.84 16 5 C 0.17 3.72 0.48 4.13 0.00 3.73 16 6 N -0.69 -17.04 4.75 -435.62 -2.07 -19.11 16 7 C 0.70 25.30 7.76 179.06 1.39 26.69 16 8 O -0.62 -28.21 12.28 -3.96 -0.05 -28.26 16 9 N -0.66 -23.87 5.31 -316.79 -1.68 -25.55 16 10 C 0.03 1.39 6.27 38.57 0.24 1.63 16 11 C -0.11 -5.28 9.90 22.13 0.22 -5.06 16 12 C -0.18 -9.76 8.70 22.48 0.20 -9.56 16 13 C 0.07 4.29 5.61 -21.27 -0.12 4.17 16 14 C -0.50 -28.28 9.01 23.39 0.21 -28.07 16 15 H 0.07 4.01 7.96 -2.91 -0.02 3.99 16 16 C 0.04 2.10 5.00 85.24 0.43 2.52 16 17 N -0.81 -43.25 11.11 21.82 0.24 -43.01 16 18 Si 0.98 38.87 29.63 68.60 2.03 40.90 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 20 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 22 C -0.24 -13.25 9.74 22.48 0.22 -13.03 16 23 C -0.08 -4.12 8.57 22.14 0.19 -3.93 16 24 C -0.12 -1.45 5.82 31.21 0.18 -1.27 16 25 C -0.13 -1.95 8.00 31.21 0.25 -1.70 16 26 C -0.15 -3.49 7.03 31.12 0.22 -3.27 16 27 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 1.54 8.05 -2.39 -0.02 1.52 16 29 H 0.04 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.08 1.02 6.09 -2.39 -0.01 1.00 16 31 H 0.07 0.98 8.01 -2.39 -0.02 0.96 16 32 H 0.03 0.43 7.97 -2.39 -0.02 0.42 16 33 H 0.05 1.56 6.99 -2.39 -0.02 1.55 16 34 H 0.06 1.10 7.62 -2.39 -0.02 1.08 16 35 H 0.41 7.33 8.69 -92.70 -0.81 6.52 16 36 H 0.41 11.16 8.84 -92.70 -0.82 10.34 16 37 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.11 5.96 6.09 -2.91 -0.02 5.94 16 39 H 0.29 13.81 8.30 -92.70 -0.77 13.04 16 40 H 0.09 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.10 5.03 6.48 -2.91 -0.02 5.01 16 42 H 0.09 0.84 7.50 -2.39 -0.02 0.82 16 43 H 0.11 1.02 7.90 -2.39 -0.02 1.01 16 44 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.09 1.93 8.10 -2.39 -0.02 1.91 16 47 H 0.04 1.19 7.55 -2.39 -0.02 1.17 16 Total: -1.00 -71.77 374.46 -0.14 -71.91 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -0.64 Total: 41.99 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 6.37 Total: -21.82 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -7.85 Total: -104.73 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.05 Total: -28.26 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -71.77 -0.14 -71.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281271915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.478 kcal (2) G-P(sol) polarization free energy of solvation -71.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds