Wall clock time and date at job start Tue Mar 31 2020 11:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 119.99714 * 2 1 4 4 O 1.21595 * 119.99696 * 194.68324 * 3 2 1 5 5 N 1.34772 * 120.00359 * 14.68277 * 3 2 1 6 6 C 1.46500 * 119.99521 * 13.63894 * 5 3 2 7 7 C 1.50700 * 109.47225 * 262.26883 * 6 5 3 8 8 H 1.08008 * 119.99771 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00474 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99642 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00178 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47059 * 60.00349 * 11 9 7 13 13 H 1.48501 * 109.47313 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47539 * 300.00218 * 11 9 7 15 15 C 1.46501 * 120.00491 * 193.63358 * 5 3 2 16 16 C 1.50687 * 109.47417 * 270.00398 * 15 5 3 17 17 C 1.38232 * 119.62046 * 95.01995 * 16 15 5 18 18 C 1.38628 * 119.16380 * 179.70496 * 17 16 15 19 19 C 1.38677 * 118.41939 * 0.51187 * 18 17 16 20 20 C 1.38184 * 119.16040 * 359.50882 * 19 18 17 21 21 N 1.31855 * 119.61968 * 274.99750 * 16 15 5 22 22 C 1.46498 * 120.00578 * 180.02562 * 2 1 3 23 23 C 1.54265 * 110.02908 * 57.90391 * 22 2 1 24 24 C 1.54969 * 104.16240 * 217.13905 * 23 22 2 25 25 C 1.54896 * 102.77485 * 37.89224 * 24 23 22 26 26 C 1.53878 * 110.02958 * 300.69466 * 22 2 1 27 27 H 1.09000 * 109.47142 * 35.13849 * 1 2 3 28 28 H 1.09001 * 109.46885 * 155.12975 * 1 2 3 29 29 H 1.08998 * 109.47427 * 275.13220 * 1 2 3 30 30 H 1.08993 * 109.47586 * 22.27609 * 6 5 3 31 31 H 1.09011 * 109.47133 * 142.27590 * 6 5 3 32 32 H 0.96995 * 119.99882 * 179.97438 * 10 9 7 33 33 H 1.09004 * 109.47106 * 149.99824 * 15 5 3 34 34 H 1.09004 * 109.46407 * 30.00765 * 15 5 3 35 35 H 1.07999 * 120.41431 * 359.95277 * 17 16 15 36 36 H 1.07998 * 120.79319 * 180.27597 * 18 17 16 37 37 H 1.07992 * 120.42010 * 179.78387 * 19 18 17 38 38 H 1.08001 * 119.61499 * 180.25623 * 20 19 18 39 39 H 1.08994 * 110.02313 * 179.30090 * 22 2 1 40 40 H 1.08999 * 110.49195 * 335.79084 * 23 22 2 41 41 H 1.09003 * 110.48537 * 98.43865 * 23 22 2 42 42 H 1.08997 * 110.72156 * 279.58060 * 24 23 22 43 43 H 1.08998 * 110.92616 * 156.29513 * 24 23 22 44 44 H 1.09002 * 110.48539 * 203.40862 * 25 24 23 45 45 H 1.08999 * 110.60007 * 80.81628 * 25 24 23 46 46 H 1.09003 * 110.03257 * 238.56651 * 26 22 2 47 47 H 1.09007 * 110.03008 * 359.97438 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3250 1.1844 -0.2669 5 7 1.4980 2.3154 0.2958 6 6 0.1650 2.2748 0.9023 7 6 -0.8798 2.4566 -0.1684 8 1 -0.5808 2.5888 -1.1978 9 6 -2.2174 2.4533 0.1658 10 7 -2.5816 2.2919 1.4193 11 14 -3.5124 2.6780 -1.1615 12 1 -3.3900 1.5875 -2.1620 13 1 -4.8636 2.6370 -0.5468 14 1 -3.3132 3.9886 -1.8308 15 6 2.1343 3.6039 0.0111 16 6 2.9409 4.0409 1.2065 17 6 4.2927 3.7567 1.2595 18 6 5.0269 4.1686 2.3609 19 6 4.3689 4.8445 3.3774 20 6 3.0150 5.0924 3.2549 21 7 2.3493 4.6903 2.1898 22 6 2.1976 -1.2686 -0.0006 23 6 1.7949 -2.1108 -1.2288 24 6 1.7820 -3.5680 -0.7016 25 6 1.2035 -3.4104 0.7266 26 6 1.8221 -2.0947 1.2422 27 1 -0.3633 0.8404 -0.5915 28 1 -0.3633 -0.9324 -0.4322 29 1 -0.3634 0.0919 1.0235 30 1 0.0183 1.3130 1.3935 31 1 0.0755 3.0753 1.6368 32 1 -3.5226 2.2900 1.6545 33 1 1.3674 4.3487 -0.2018 34 1 2.7911 3.5016 -0.8528 35 1 4.7715 3.2241 0.4512 36 1 6.0853 3.9645 2.4275 37 1 4.9087 5.1770 4.2517 38 1 2.4962 5.6219 4.0403 39 1 3.2710 -1.0797 -0.0130 40 1 0.8039 -1.8235 -1.5801 41 1 2.5304 -1.9991 -2.0256 42 1 2.7928 -3.9743 -0.6663 43 1 1.1353 -4.1974 -1.3130 44 1 1.5074 -4.2471 1.3557 45 1 0.1167 -3.3339 0.6939 46 1 2.7134 -2.3073 1.8325 47 1 1.0951 -1.5513 1.8460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282878443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:20 Heat of formation + Delta-G solvation = 40.677895 kcal Electronic energy + Delta-G solvation = -27932.863923 eV Core-core repulsion = 24310.000880 eV Total energy + Delta-G solvation = -3622.863043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.15170 -39.50120 -37.58288 -35.30775 -33.97891 -32.70015 -32.06446 -31.12743 -28.48357 -28.35155 -27.37300 -26.23143 -24.65890 -23.21815 -22.72473 -21.86648 -20.49307 -19.86829 -18.41263 -17.04464 -16.54489 -16.38716 -16.08469 -15.61280 -15.22332 -15.09943 -14.88835 -14.48782 -14.33897 -13.73987 -13.37748 -13.07218 -12.94571 -12.90640 -12.61343 -12.41455 -12.31516 -11.80895 -11.60978 -11.34559 -11.29719 -11.08325 -10.97111 -10.93898 -10.88829 -10.72388 -10.46451 -10.28485 -10.26400 -9.86824 -9.54715 -9.47213 -9.15704 -8.98640 -8.65044 -8.52211 -7.94443 -7.37209 -6.19146 -4.18839 1.41990 1.62985 3.22597 3.28772 3.30908 3.50155 3.90922 4.19869 4.29324 4.71348 4.77488 4.86931 4.92848 5.07168 5.09324 5.12974 5.15654 5.36059 5.50791 5.62473 5.73348 5.77269 5.79053 5.81549 5.89550 5.91276 6.03139 6.05836 6.13485 6.18443 6.23087 6.31700 6.44500 6.45443 6.50176 6.52068 6.57009 6.67180 6.98773 7.04305 7.28327 7.33749 7.45433 7.65102 7.85358 7.93965 8.13484 8.42727 8.69143 8.89312 9.34264 9.46623 10.85440 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008232 B = 0.006246 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.395867 B = 4481.558128 C = 7049.523602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.622 5.622 3 C 0.710 3.290 4 O -0.622 6.622 5 N -0.607 5.607 6 C 0.214 3.786 7 C -0.531 4.531 8 H 0.064 0.936 9 C 0.067 3.933 10 N -0.880 5.880 11 Si 0.892 3.108 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.189 3.811 16 C 0.122 3.878 17 C -0.145 4.145 18 C -0.087 4.087 19 C -0.183 4.183 20 C 0.092 3.908 21 N -0.464 5.464 22 C 0.156 3.844 23 C -0.135 4.135 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.138 4.138 27 H 0.148 0.852 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.150 0.850 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.417 -3.843 0.577 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.357 5.357 3 C 0.413 3.587 4 O -0.504 6.504 5 N -0.341 5.341 6 C 0.095 3.905 7 C -0.569 4.569 8 H 0.082 0.918 9 C -0.137 4.137 10 N -0.517 5.517 11 Si 0.719 3.281 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.064 3.936 16 C -0.017 4.017 17 C -0.165 4.165 18 C -0.113 4.113 19 C -0.204 4.204 20 C -0.066 4.066 21 N -0.173 5.173 22 C 0.051 3.949 23 C -0.173 4.173 24 C -0.160 4.160 25 C -0.159 4.159 26 C -0.177 4.177 27 H 0.165 0.835 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.167 0.833 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.927 -3.654 0.513 9.660 hybrid contribution -0.018 -0.114 -0.255 0.280 sum 8.909 -3.768 0.258 9.677 Atomic orbital electron populations 1.23668 0.77569 1.05076 1.04243 1.47046 1.07402 1.03424 1.77853 1.15939 0.84234 0.80826 0.77679 1.90742 1.14658 1.86295 1.58709 1.47260 1.20157 1.02392 1.64264 1.20242 0.76277 1.00259 0.93731 1.21283 0.91009 1.50136 0.94494 0.91768 1.24928 0.98405 0.94905 0.95476 1.69918 1.17314 1.47873 1.16562 0.86647 0.80603 0.79053 0.81790 1.19998 1.21156 1.20069 1.19952 0.95849 0.86062 0.91781 1.21963 0.91640 0.92659 0.95452 1.22130 0.95312 0.99573 0.99529 1.21531 1.00059 0.96154 0.93534 1.22057 0.96521 1.01793 0.99993 1.22730 0.91448 0.96893 0.95527 1.67601 1.39557 1.09420 1.00763 1.21441 0.97254 0.82828 0.93399 1.22771 1.02448 0.94279 0.97809 1.22455 1.00638 0.96612 0.96310 1.22321 1.00406 0.97039 0.96156 1.22563 1.00923 0.96057 0.98122 0.83531 0.94564 0.92137 0.92059 0.94228 0.92373 0.88709 0.89957 0.84351 0.85488 0.85510 0.83260 0.88937 0.90589 0.91665 0.91740 0.91788 0.92097 0.91556 0.91893 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 7.20 59.84 0.43 1.12 16 2 N -0.62 -12.23 2.70 -178.39 -0.48 -12.72 16 3 C 0.71 15.44 7.90 -86.92 -0.69 14.76 16 4 O -0.62 -14.10 14.79 5.28 0.08 -14.02 16 5 N -0.61 -13.20 2.42 -182.18 -0.44 -13.64 16 6 C 0.21 5.11 4.61 -5.19 -0.02 5.08 16 7 C -0.53 -13.05 5.82 -34.44 -0.20 -13.25 16 8 H 0.06 1.59 7.66 -52.48 -0.40 1.19 16 9 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.88 -23.34 13.29 55.43 0.74 -22.60 16 11 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 15 C 0.19 3.71 5.63 -5.20 -0.03 3.69 16 16 C 0.12 2.29 6.36 -82.59 -0.53 1.77 16 17 C -0.15 -2.42 9.40 -39.44 -0.37 -2.79 16 18 C -0.09 -1.22 10.18 -39.28 -0.40 -1.62 16 19 C -0.18 -2.45 10.11 -39.44 -0.40 -2.85 16 20 C 0.09 1.42 11.18 -17.55 -0.20 1.22 16 21 N -0.46 -8.85 10.27 -9.48 -0.10 -8.95 16 22 C 0.16 2.60 3.28 -66.81 -0.22 2.38 16 23 C -0.13 -1.93 6.33 -25.03 -0.16 -2.09 16 24 C -0.12 -1.44 6.91 -24.69 -0.17 -1.61 16 25 C -0.12 -1.50 6.83 -25.07 -0.17 -1.67 16 26 C -0.14 -2.04 6.29 -25.61 -0.16 -2.20 16 27 H 0.15 3.32 3.53 -60.25 -0.21 3.11 16 28 H 0.04 0.66 6.39 -51.93 -0.33 0.33 16 29 H 0.06 1.33 5.75 -51.93 -0.30 1.04 16 30 H 0.06 1.53 4.20 -51.93 -0.22 1.31 16 31 H 0.04 1.05 8.13 -51.92 -0.42 0.63 16 32 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.09 1.89 8.07 -51.93 -0.42 1.47 16 34 H 0.08 1.52 7.55 -51.93 -0.39 1.13 16 35 H 0.14 2.31 7.60 -52.49 -0.40 1.91 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.15 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.09 1.66 7.03 -51.93 -0.37 1.30 16 40 H 0.08 1.17 6.24 -51.93 -0.32 0.84 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.20 7.32 -51.93 -0.38 0.82 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -28.28 368.64 -10.16 -38.44 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.11 Total: 9.72 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -3.38 Total: 3.54 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.28 Total: -57.90 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.08 Total: -14.02 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.28 -10.16 -38.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282878443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.115 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds