Wall clock time and date at job start Tue Mar 31 2020 11:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 119.99714 * 2 1 4 4 O 1.21595 * 119.99696 * 194.68324 * 3 2 1 5 5 N 1.34772 * 120.00359 * 14.68277 * 3 2 1 6 6 C 1.46500 * 119.99521 * 13.63894 * 5 3 2 7 7 C 1.50700 * 109.47225 * 262.26883 * 6 5 3 8 8 H 1.08008 * 119.99771 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00474 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99642 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00178 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47059 * 60.00349 * 11 9 7 13 13 H 1.48501 * 109.47313 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47539 * 300.00218 * 11 9 7 15 15 C 1.46501 * 120.00491 * 193.63358 * 5 3 2 16 16 C 1.50687 * 109.47417 * 270.00398 * 15 5 3 17 17 C 1.38232 * 119.62046 * 95.01995 * 16 15 5 18 18 C 1.38628 * 119.16380 * 179.70496 * 17 16 15 19 19 C 1.38677 * 118.41939 * 0.51187 * 18 17 16 20 20 C 1.38184 * 119.16040 * 359.50882 * 19 18 17 21 21 N 1.31855 * 119.61968 * 274.99750 * 16 15 5 22 22 C 1.46498 * 120.00578 * 180.02562 * 2 1 3 23 23 C 1.54265 * 110.02908 * 57.90391 * 22 2 1 24 24 C 1.54969 * 104.16240 * 217.13905 * 23 22 2 25 25 C 1.54896 * 102.77485 * 37.89224 * 24 23 22 26 26 C 1.53878 * 110.02958 * 300.69466 * 22 2 1 27 27 H 1.09000 * 109.47142 * 35.13849 * 1 2 3 28 28 H 1.09001 * 109.46885 * 155.12975 * 1 2 3 29 29 H 1.08998 * 109.47427 * 275.13220 * 1 2 3 30 30 H 1.08993 * 109.47586 * 22.27609 * 6 5 3 31 31 H 1.09011 * 109.47133 * 142.27590 * 6 5 3 32 32 H 0.96995 * 119.99882 * 179.97438 * 10 9 7 33 33 H 1.09004 * 109.47106 * 149.99824 * 15 5 3 34 34 H 1.09004 * 109.46407 * 30.00765 * 15 5 3 35 35 H 1.07999 * 120.41431 * 359.95277 * 17 16 15 36 36 H 1.07998 * 120.79319 * 180.27597 * 18 17 16 37 37 H 1.07992 * 120.42010 * 179.78387 * 19 18 17 38 38 H 1.08001 * 119.61499 * 180.25623 * 20 19 18 39 39 H 1.08994 * 110.02313 * 179.30090 * 22 2 1 40 40 H 1.08999 * 110.49195 * 335.79084 * 23 22 2 41 41 H 1.09003 * 110.48537 * 98.43865 * 23 22 2 42 42 H 1.08997 * 110.72156 * 279.58060 * 24 23 22 43 43 H 1.08998 * 110.92616 * 156.29513 * 24 23 22 44 44 H 1.09002 * 110.48539 * 203.40862 * 25 24 23 45 45 H 1.08999 * 110.60007 * 80.81628 * 25 24 23 46 46 H 1.09003 * 110.03257 * 238.56651 * 26 22 2 47 47 H 1.09007 * 110.03008 * 359.97438 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3250 1.1844 -0.2669 5 7 1.4980 2.3154 0.2958 6 6 0.1650 2.2748 0.9023 7 6 -0.8798 2.4566 -0.1684 8 1 -0.5808 2.5888 -1.1978 9 6 -2.2174 2.4533 0.1658 10 7 -2.5816 2.2919 1.4193 11 14 -3.5124 2.6780 -1.1615 12 1 -3.3900 1.5875 -2.1620 13 1 -4.8636 2.6370 -0.5468 14 1 -3.3132 3.9886 -1.8308 15 6 2.1343 3.6039 0.0111 16 6 2.9409 4.0409 1.2065 17 6 4.2927 3.7567 1.2595 18 6 5.0269 4.1686 2.3609 19 6 4.3689 4.8445 3.3774 20 6 3.0150 5.0924 3.2549 21 7 2.3493 4.6903 2.1898 22 6 2.1976 -1.2686 -0.0006 23 6 1.7949 -2.1108 -1.2288 24 6 1.7820 -3.5680 -0.7016 25 6 1.2035 -3.4104 0.7266 26 6 1.8221 -2.0947 1.2422 27 1 -0.3633 0.8404 -0.5915 28 1 -0.3633 -0.9324 -0.4322 29 1 -0.3634 0.0919 1.0235 30 1 0.0183 1.3130 1.3935 31 1 0.0755 3.0753 1.6368 32 1 -3.5226 2.2900 1.6545 33 1 1.3674 4.3487 -0.2018 34 1 2.7911 3.5016 -0.8528 35 1 4.7715 3.2241 0.4512 36 1 6.0853 3.9645 2.4275 37 1 4.9087 5.1770 4.2517 38 1 2.4962 5.6219 4.0403 39 1 3.2710 -1.0797 -0.0130 40 1 0.8039 -1.8235 -1.5801 41 1 2.5304 -1.9991 -2.0256 42 1 2.7928 -3.9743 -0.6663 43 1 1.1353 -4.1974 -1.3130 44 1 1.5074 -4.2471 1.3557 45 1 0.1167 -3.3339 0.6939 46 1 2.7134 -2.3073 1.8325 47 1 1.0951 -1.5513 1.8460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282878443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:19 Heat of formation + Delta-G solvation = 26.582847 kcal Electronic energy + Delta-G solvation = -27933.475131 eV Core-core repulsion = 24310.000880 eV Total energy + Delta-G solvation = -3623.474250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70009 -40.84596 -38.90943 -37.11752 -35.43511 -34.55159 -33.32122 -32.52742 -30.02662 -29.60947 -28.84260 -27.76585 -26.31294 -24.77006 -24.26103 -23.20175 -21.53406 -21.29692 -19.94461 -18.88104 -18.15631 -17.79714 -17.56113 -16.96642 -16.69838 -16.41562 -16.24897 -16.11203 -15.86468 -15.23998 -14.71758 -14.41060 -14.32753 -14.24880 -14.20115 -14.02007 -13.89793 -13.42620 -13.06614 -12.74065 -12.73795 -12.61064 -12.55734 -12.38553 -12.17242 -11.97931 -11.92250 -11.76478 -11.57743 -11.48387 -11.22211 -10.82980 -10.77226 -10.51977 -10.34907 -9.92808 -9.64360 -9.05464 -8.14496 -6.20282 0.17513 0.42836 1.45807 1.47822 1.54440 1.93470 2.19539 2.43103 2.87290 3.10937 3.22352 3.44601 3.71185 3.75532 3.87080 4.02633 4.04077 4.21353 4.29424 4.42910 4.48761 4.50501 4.57654 4.62213 4.63256 4.64720 4.79857 4.81446 4.84088 4.91558 4.94182 5.08202 5.12499 5.18766 5.24834 5.26890 5.30019 5.35068 5.37995 5.47322 5.61429 5.62663 5.76742 5.85081 6.06672 6.13439 6.28126 6.74482 7.08677 7.17049 7.38182 7.72626 8.89541 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008232 B = 0.006246 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.395867 B = 4481.558128 C = 7049.523602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.621 5.621 3 C 0.702 3.298 4 O -0.633 6.633 5 N -0.611 5.611 6 C 0.237 3.763 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.028 3.972 10 N -0.912 5.912 11 Si 0.951 3.049 12 H -0.264 1.264 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.189 3.811 16 C 0.096 3.904 17 C -0.155 4.155 18 C -0.082 4.082 19 C -0.166 4.166 20 C 0.076 3.924 21 N -0.506 5.506 22 C 0.147 3.853 23 C -0.132 4.132 24 C -0.111 4.111 25 C -0.116 4.116 26 C -0.135 4.135 27 H 0.126 0.874 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.005 0.995 32 H 0.267 0.733 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.164 0.836 37 H 0.171 0.829 38 H 0.173 0.827 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.629 -5.056 0.695 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.356 5.356 3 C 0.405 3.595 4 O -0.517 6.517 5 N -0.345 5.345 6 C 0.117 3.883 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.173 4.173 10 N -0.550 5.550 11 Si 0.776 3.224 12 H -0.189 1.189 13 H -0.210 1.210 14 H -0.202 1.202 15 C 0.065 3.935 16 C -0.042 4.042 17 C -0.176 4.176 18 C -0.108 4.108 19 C -0.185 4.185 20 C -0.081 4.081 21 N -0.216 5.216 22 C 0.043 3.957 23 C -0.170 4.170 24 C -0.149 4.149 25 C -0.154 4.154 26 C -0.174 4.174 27 H 0.143 0.857 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.151 0.849 36 H 0.182 0.818 37 H 0.189 0.811 38 H 0.190 0.810 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.156 -4.883 0.613 11.285 hybrid contribution -0.282 0.313 -0.210 0.471 sum 9.874 -4.570 0.404 10.887 Atomic orbital electron populations 1.23230 0.77960 1.05121 1.02396 1.47168 1.07238 1.04017 1.77216 1.16124 0.84287 0.81240 0.77871 1.90715 1.14984 1.86519 1.59450 1.47257 1.19563 1.03419 1.64217 1.19818 0.77438 0.98154 0.92931 1.21335 0.91398 1.49719 0.94206 0.92226 1.25561 1.00044 0.94597 0.97146 1.70026 1.17635 1.49054 1.18252 0.85714 0.78149 0.79006 0.79520 1.18896 1.21017 1.20188 1.19949 0.95614 0.84846 0.93123 1.21711 0.92467 0.94579 0.95444 1.22136 0.94650 1.00100 1.00707 1.21970 1.01670 0.94836 0.92276 1.22494 0.95564 0.99650 1.00801 1.23256 0.92937 0.96875 0.95030 1.67503 1.41245 1.10747 1.02101 1.21720 0.96177 0.81985 0.95772 1.22737 1.01741 0.95776 0.96747 1.22437 1.02021 0.94766 0.95679 1.22309 0.99983 0.96143 0.96931 1.22526 1.00939 0.96876 0.97026 0.85656 0.92378 0.94363 0.93174 0.97670 0.92368 0.90154 0.89406 0.84938 0.81818 0.81113 0.81035 0.90316 0.91621 0.91382 0.90152 0.89924 0.89784 0.92021 0.90843 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.22 7.20 127.77 0.92 3.14 16 2 N -0.62 -25.03 2.70 -836.55 -2.26 -27.29 16 3 C 0.70 31.56 7.90 179.06 1.42 32.97 16 4 O -0.63 -29.39 14.79 -4.01 -0.06 -29.45 16 5 N -0.61 -27.92 2.42 -848.57 -2.05 -29.97 16 6 C 0.24 11.93 4.61 85.63 0.39 12.33 16 7 C -0.53 -26.93 5.82 25.60 0.15 -26.78 16 8 H 0.06 3.05 7.66 -2.91 -0.02 3.03 16 9 C 0.03 1.44 5.46 84.65 0.46 1.90 16 10 N -0.91 -49.72 13.29 21.45 0.28 -49.44 16 11 Si 0.95 40.77 29.54 68.60 2.03 42.80 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 13 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 15 C 0.19 7.89 5.63 85.63 0.48 8.38 16 16 C 0.10 3.75 6.36 42.55 0.27 4.02 16 17 C -0.16 -5.19 9.40 22.36 0.21 -4.98 16 18 C -0.08 -2.10 10.18 22.47 0.23 -1.87 16 19 C -0.17 -3.95 10.11 22.36 0.23 -3.72 16 20 C 0.08 2.30 11.18 84.67 0.95 3.25 16 21 N -0.51 -19.90 10.27 -183.89 -1.89 -21.79 16 22 C 0.15 4.88 3.28 45.72 0.15 5.03 16 23 C -0.13 -3.60 6.33 31.70 0.20 -3.40 16 24 C -0.11 -2.28 6.91 31.92 0.22 -2.06 16 25 C -0.12 -2.59 6.83 31.67 0.22 -2.38 16 26 C -0.13 -3.88 6.29 31.32 0.20 -3.69 16 27 H 0.13 5.85 3.53 -10.20 -0.04 5.81 16 28 H 0.06 2.12 6.39 -2.39 -0.02 2.10 16 29 H 0.04 1.76 5.75 -2.39 -0.01 1.75 16 30 H 0.05 2.66 4.20 -2.39 -0.01 2.65 16 31 H 0.01 0.29 8.13 -2.38 -0.02 0.27 16 32 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 33 H 0.08 3.46 8.07 -2.38 -0.02 3.45 16 34 H 0.09 3.44 7.55 -2.39 -0.02 3.42 16 35 H 0.13 4.49 7.60 -2.91 -0.02 4.47 16 36 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 37 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.17 4.17 8.06 -2.91 -0.02 4.14 16 39 H 0.08 2.83 7.03 -2.39 -0.02 2.81 16 40 H 0.07 1.93 6.24 -2.39 -0.01 1.92 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.05 1.64 7.32 -2.38 -0.02 1.63 16 Total: -1.00 -63.78 368.64 3.68 -60.10 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.94 Total: 32.90 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 6.69 Total: 22.14 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -5.92 Total: -128.49 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.06 Total: -29.45 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -63.78 3.68 -60.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282878443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.684 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds