Wall clock time and date at job start Tue Mar 31 2020 11:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 119.99848 * 2 1 4 4 O 1.21589 * 120.00234 * 186.62828 * 3 2 1 5 5 N 1.34774 * 120.00264 * 6.62583 * 3 2 1 6 6 C 1.46503 * 119.99769 * 11.90974 * 5 3 2 7 7 C 1.50696 * 109.47339 * 71.97656 * 6 5 3 8 8 H 1.08005 * 119.99664 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00226 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99795 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00156 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46847 * 89.99678 * 11 9 7 13 13 H 1.48498 * 109.47055 * 209.99711 * 11 9 7 14 14 H 1.48495 * 109.46902 * 329.99424 * 11 9 7 15 15 C 1.46499 * 120.00346 * 191.90786 * 5 3 2 16 16 C 1.50699 * 109.47352 * 90.00264 * 15 5 3 17 17 C 1.38684 * 120.41420 * 269.72375 * 16 15 5 18 18 C 1.38619 * 118.41500 * 179.78038 * 17 16 15 19 19 C 1.38229 * 119.16467 * 0.51178 * 18 17 16 20 20 N 1.31848 * 120.76250 * 359.72491 * 19 18 17 21 21 C 1.31886 * 121.72690 * 0.02562 * 20 19 18 22 22 C 1.46502 * 120.00167 * 179.97438 * 2 1 3 23 23 C 1.54957 * 110.92746 * 306.54621 * 22 2 1 24 24 C 1.54267 * 104.16174 * 156.29415 * 23 22 2 25 25 C 1.53870 * 106.63966 * 336.44353 * 24 23 22 26 26 C 1.54262 * 106.59766 * 359.97438 * 25 24 23 27 27 H 1.08991 * 109.47411 * 298.63174 * 1 2 3 28 28 H 1.08991 * 109.47122 * 58.63567 * 1 2 3 29 29 H 1.09003 * 109.46518 * 178.63100 * 1 2 3 30 30 H 1.09000 * 109.47378 * 191.97739 * 6 5 3 31 31 H 1.08998 * 109.47025 * 311.96999 * 6 5 3 32 32 H 0.97003 * 120.00206 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.47327 * 210.00117 * 15 5 3 34 34 H 1.08998 * 109.47059 * 329.99534 * 15 5 3 35 35 H 1.08003 * 120.78968 * 0.02562 * 17 16 15 36 36 H 1.08002 * 120.41790 * 180.21871 * 18 17 16 37 37 H 1.08006 * 119.61953 * 179.74659 * 19 18 17 38 38 H 1.07999 * 119.61547 * 180.02562 * 21 20 19 39 39 H 1.08998 * 110.67296 * 183.23372 * 22 2 1 40 40 H 1.08995 * 110.47726 * 37.63695 * 23 22 2 41 41 H 1.09006 * 110.52810 * 274.97433 * 23 22 2 42 42 H 1.09004 * 110.02920 * 217.13481 * 24 23 22 43 43 H 1.09003 * 110.03007 * 95.75938 * 24 23 22 44 44 H 1.09004 * 110.03008 * 119.26371 * 25 24 23 45 45 H 1.09002 * 110.03438 * 240.64272 * 25 24 23 46 46 H 1.09004 * 110.48642 * 142.28844 * 26 25 24 47 47 H 1.09006 * 110.48840 * 264.92853 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3486 1.1708 -0.1215 5 7 1.4717 2.3305 0.1347 6 6 0.0638 2.3248 0.5396 7 6 -0.0389 1.9474 1.9949 8 1 0.8552 1.7327 2.5614 9 6 -1.2743 1.8750 2.6029 10 7 -2.3630 2.1359 1.9128 11 14 -1.4016 1.4064 4.4067 12 1 -1.3384 2.6325 5.2422 13 1 -2.6906 0.7094 4.6472 14 1 -0.2771 0.5050 4.7644 15 6 2.1544 3.6006 -0.1238 16 6 1.9966 3.9694 -1.5764 17 6 2.9315 3.5527 -2.5122 18 6 2.7431 3.9115 -3.8378 19 6 1.6433 4.6763 -4.1788 20 7 0.7772 5.0589 -3.2613 21 6 0.9218 4.7320 -1.9918 22 6 2.1975 -1.2687 0.0006 23 6 1.7279 -2.1785 1.1637 24 6 2.0871 -3.6041 0.6965 25 6 2.1618 -3.5586 -0.8397 26 6 1.8449 -2.1067 -1.2535 27 1 -0.3634 0.4924 0.9019 28 1 -0.3633 0.5348 -0.8774 29 1 -0.3632 -1.0274 -0.0246 30 1 -0.3611 3.3175 0.3909 31 1 -0.4847 1.6010 -0.0632 32 1 -3.2321 2.0854 2.3406 33 1 1.7174 4.3813 0.4988 34 1 3.2137 3.4983 0.1121 35 1 3.7838 2.9593 -2.2157 36 1 3.4492 3.6015 -4.5939 37 1 1.4916 4.9636 -5.2089 38 1 0.1913 5.0635 -1.2688 39 1 3.2717 -1.0928 0.0580 40 1 0.6520 -2.0848 1.3106 41 1 2.2620 -1.9319 2.0815 42 1 1.3151 -4.3060 1.0121 43 1 3.0517 -3.9003 1.1088 44 1 3.1630 -3.8318 -1.1730 45 1 1.4268 -4.2390 -1.2697 46 1 2.4642 -1.8071 -2.0990 47 1 0.7877 -2.0017 -1.4976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282991874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:25 Heat of formation + Delta-G solvation = 49.446159 kcal Electronic energy + Delta-G solvation = -27979.442376 eV Core-core repulsion = 24356.959553 eV Total energy + Delta-G solvation = -3622.482823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22379 -39.56403 -37.62558 -35.45428 -34.32688 -32.86856 -32.04914 -31.16795 -28.50296 -28.43206 -27.38043 -26.19286 -24.94866 -23.40742 -22.68493 -21.96497 -20.10287 -19.95987 -18.81449 -17.06738 -16.84779 -16.31564 -16.09699 -15.73451 -15.20442 -15.12073 -14.92552 -14.50181 -14.27482 -13.79757 -13.31108 -13.21234 -13.11811 -12.82223 -12.74749 -12.63420 -12.35772 -12.13746 -11.89927 -11.69697 -11.23915 -11.12528 -11.09617 -10.97393 -10.91949 -10.88823 -10.34730 -10.30735 -10.24478 -9.82232 -9.57444 -9.44622 -9.20696 -9.06489 -8.77029 -8.52421 -7.93606 -7.36834 -6.27340 -4.32409 1.32495 1.54240 3.17462 3.25638 3.28970 3.45394 3.92494 4.09994 4.25120 4.67403 4.73052 4.87764 4.89555 5.02871 5.04676 5.08234 5.20883 5.27063 5.34814 5.59146 5.62410 5.65330 5.75399 5.76076 5.82048 5.91063 5.98358 6.04222 6.05148 6.05878 6.19802 6.21379 6.36342 6.38647 6.42350 6.51624 6.56406 6.62420 6.76768 6.95753 7.14800 7.24386 7.31821 7.55342 7.74210 7.88506 8.03662 8.20361 8.62192 8.85100 9.29040 9.44863 10.76268 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008849 B = 0.006073 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.506782 B = 4609.483890 C = 6968.538334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.610 5.610 3 C 0.718 3.282 4 O -0.626 6.626 5 N -0.612 5.612 6 C 0.190 3.810 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.884 5.884 11 Si 0.893 3.107 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.177 3.823 16 C -0.144 4.144 17 C -0.057 4.057 18 C -0.181 4.181 19 C 0.088 3.912 20 N -0.489 5.489 21 C 0.114 3.886 22 C 0.158 3.842 23 C -0.137 4.137 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.135 4.135 27 H 0.154 0.846 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.079 0.921 32 H 0.267 0.733 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.301 -4.185 -7.126 10.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.344 5.344 3 C 0.421 3.579 4 O -0.508 6.508 5 N -0.345 5.345 6 C 0.071 3.929 7 C -0.567 4.567 8 H 0.080 0.920 9 C -0.138 4.138 10 N -0.521 5.521 11 Si 0.721 3.279 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.051 3.949 16 C -0.148 4.148 17 C -0.084 4.084 18 C -0.201 4.201 19 C -0.069 4.069 20 N -0.198 5.198 21 C -0.043 4.043 22 C 0.053 3.947 23 C -0.176 4.176 24 C -0.159 4.159 25 C -0.158 4.158 26 C -0.174 4.174 27 H 0.170 0.830 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.174 0.826 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.969 -3.654 -7.408 10.191 hybrid contribution 0.361 -0.786 1.183 1.465 sum 6.329 -4.440 -6.225 9.926 Atomic orbital electron populations 1.23454 0.79171 1.00889 1.07029 1.46647 1.06812 1.03660 1.77300 1.15758 0.84413 0.80744 0.76967 1.90747 1.12607 1.86703 1.60761 1.47225 1.14450 1.02653 1.70204 1.20922 0.76038 1.00134 0.95775 1.21430 0.92900 1.46758 0.95629 0.92029 1.24954 0.95530 0.94984 0.98287 1.69926 0.98115 1.47573 1.36506 0.86549 0.77667 0.78889 0.84825 1.20429 1.20962 1.19677 1.20000 0.99120 0.86366 0.89366 1.21564 0.95992 0.98484 0.98737 1.21638 0.98528 0.95714 0.92499 1.22091 0.99953 1.00976 0.97041 1.22673 0.90649 0.94766 0.98826 1.67688 1.28526 1.21509 1.02066 1.22771 0.95373 0.93757 0.92435 1.21780 0.97308 0.82103 0.93491 1.22761 1.02369 0.93939 0.98507 1.22060 1.01246 0.97109 0.95521 1.22046 1.01226 0.96663 0.95897 1.22722 1.01863 0.94511 0.98281 0.82958 0.93599 0.93756 0.95063 0.90445 0.92278 0.89575 0.89683 0.84655 0.85344 0.83351 0.82642 0.88266 0.90626 0.91489 0.91953 0.92008 0.92014 0.92028 0.91817 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 7.20 59.85 0.43 1.11 16 2 N -0.61 -11.99 2.88 -202.06 -0.58 -12.57 16 3 C 0.72 15.52 7.82 -86.92 -0.68 14.84 16 4 O -0.63 -14.39 15.30 5.29 0.08 -14.31 16 5 N -0.61 -12.75 2.53 -182.19 -0.46 -13.22 16 6 C 0.19 4.29 4.78 -5.19 -0.02 4.27 16 7 C -0.53 -12.97 6.89 -34.44 -0.24 -13.21 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.07 1.65 5.01 -17.82 -0.09 1.56 16 10 N -0.88 -22.66 13.29 55.43 0.74 -21.92 16 11 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.18 3.19 5.59 -5.19 -0.03 3.16 16 16 C -0.14 -2.41 5.48 -104.48 -0.57 -2.98 16 17 C -0.06 -0.89 9.86 -39.28 -0.39 -1.28 16 18 C -0.18 -2.43 10.11 -39.44 -0.40 -2.83 16 19 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 20 N -0.49 -8.03 10.36 -13.25 -0.14 -8.17 16 21 C 0.11 1.89 10.86 -17.55 -0.19 1.70 16 22 C 0.16 2.67 3.24 -65.90 -0.21 2.46 16 23 C -0.14 -2.08 6.32 -25.04 -0.16 -2.24 16 24 C -0.12 -1.46 6.80 -25.62 -0.17 -1.63 16 25 C -0.12 -1.40 6.80 -25.62 -0.17 -1.57 16 26 C -0.13 -1.91 6.35 -25.07 -0.16 -2.07 16 27 H 0.15 3.44 2.97 -51.93 -0.15 3.29 16 28 H 0.05 0.92 6.60 -51.93 -0.34 0.58 16 29 H 0.04 0.77 6.03 -51.93 -0.31 0.46 16 30 H 0.03 0.74 7.92 -51.93 -0.41 0.33 16 31 H 0.08 1.79 3.18 -81.22 -0.26 1.53 16 32 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.09 1.47 7.98 -51.93 -0.41 1.05 16 34 H 0.08 1.55 7.25 -51.93 -0.38 1.17 16 35 H 0.14 2.14 8.06 -52.48 -0.42 1.72 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 38 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 39 H 0.10 1.81 7.03 -51.93 -0.37 1.44 16 40 H 0.08 1.21 6.50 -51.93 -0.34 0.87 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 1.01 6.86 -51.93 -0.36 0.65 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -27.92 369.05 -10.18 -38.10 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -7.10 Total: 9.51 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -3.25 Total: 2.32 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.44 Total: -55.87 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.08 Total: -14.31 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.92 -10.18 -38.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282991874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.543 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds