Wall clock time and date at job start Tue Mar 31 2020 11:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 119.99848 * 2 1 4 4 O 1.21589 * 120.00234 * 186.62828 * 3 2 1 5 5 N 1.34774 * 120.00264 * 6.62583 * 3 2 1 6 6 C 1.46503 * 119.99769 * 11.90974 * 5 3 2 7 7 C 1.50696 * 109.47339 * 71.97656 * 6 5 3 8 8 H 1.08005 * 119.99664 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00226 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99795 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00156 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46847 * 89.99678 * 11 9 7 13 13 H 1.48498 * 109.47055 * 209.99711 * 11 9 7 14 14 H 1.48495 * 109.46902 * 329.99424 * 11 9 7 15 15 C 1.46499 * 120.00346 * 191.90786 * 5 3 2 16 16 C 1.50699 * 109.47352 * 90.00264 * 15 5 3 17 17 C 1.38684 * 120.41420 * 269.72375 * 16 15 5 18 18 C 1.38619 * 118.41500 * 179.78038 * 17 16 15 19 19 C 1.38229 * 119.16467 * 0.51178 * 18 17 16 20 20 N 1.31848 * 120.76250 * 359.72491 * 19 18 17 21 21 C 1.31886 * 121.72690 * 0.02562 * 20 19 18 22 22 C 1.46502 * 120.00167 * 179.97438 * 2 1 3 23 23 C 1.54957 * 110.92746 * 306.54621 * 22 2 1 24 24 C 1.54267 * 104.16174 * 156.29415 * 23 22 2 25 25 C 1.53870 * 106.63966 * 336.44353 * 24 23 22 26 26 C 1.54262 * 106.59766 * 359.97438 * 25 24 23 27 27 H 1.08991 * 109.47411 * 298.63174 * 1 2 3 28 28 H 1.08991 * 109.47122 * 58.63567 * 1 2 3 29 29 H 1.09003 * 109.46518 * 178.63100 * 1 2 3 30 30 H 1.09000 * 109.47378 * 191.97739 * 6 5 3 31 31 H 1.08998 * 109.47025 * 311.96999 * 6 5 3 32 32 H 0.97003 * 120.00206 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.47327 * 210.00117 * 15 5 3 34 34 H 1.08998 * 109.47059 * 329.99534 * 15 5 3 35 35 H 1.08003 * 120.78968 * 0.02562 * 17 16 15 36 36 H 1.08002 * 120.41790 * 180.21871 * 18 17 16 37 37 H 1.08006 * 119.61953 * 179.74659 * 19 18 17 38 38 H 1.07999 * 119.61547 * 180.02562 * 21 20 19 39 39 H 1.08998 * 110.67296 * 183.23372 * 22 2 1 40 40 H 1.08995 * 110.47726 * 37.63695 * 23 22 2 41 41 H 1.09006 * 110.52810 * 274.97433 * 23 22 2 42 42 H 1.09004 * 110.02920 * 217.13481 * 24 23 22 43 43 H 1.09003 * 110.03007 * 95.75938 * 24 23 22 44 44 H 1.09004 * 110.03008 * 119.26371 * 25 24 23 45 45 H 1.09002 * 110.03438 * 240.64272 * 25 24 23 46 46 H 1.09004 * 110.48642 * 142.28844 * 26 25 24 47 47 H 1.09006 * 110.48840 * 264.92853 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3486 1.1708 -0.1215 5 7 1.4717 2.3305 0.1347 6 6 0.0638 2.3248 0.5396 7 6 -0.0389 1.9474 1.9949 8 1 0.8552 1.7327 2.5614 9 6 -1.2743 1.8750 2.6029 10 7 -2.3630 2.1359 1.9128 11 14 -1.4016 1.4064 4.4067 12 1 -1.3384 2.6325 5.2422 13 1 -2.6906 0.7094 4.6472 14 1 -0.2771 0.5050 4.7644 15 6 2.1544 3.6006 -0.1238 16 6 1.9966 3.9694 -1.5764 17 6 2.9315 3.5527 -2.5122 18 6 2.7431 3.9115 -3.8378 19 6 1.6433 4.6763 -4.1788 20 7 0.7772 5.0589 -3.2613 21 6 0.9218 4.7320 -1.9918 22 6 2.1975 -1.2687 0.0006 23 6 1.7279 -2.1785 1.1637 24 6 2.0871 -3.6041 0.6965 25 6 2.1618 -3.5586 -0.8397 26 6 1.8449 -2.1067 -1.2535 27 1 -0.3634 0.4924 0.9019 28 1 -0.3633 0.5348 -0.8774 29 1 -0.3632 -1.0274 -0.0246 30 1 -0.3611 3.3175 0.3909 31 1 -0.4847 1.6010 -0.0632 32 1 -3.2321 2.0854 2.3406 33 1 1.7174 4.3813 0.4988 34 1 3.2137 3.4983 0.1121 35 1 3.7838 2.9593 -2.2157 36 1 3.4492 3.6015 -4.5939 37 1 1.4916 4.9636 -5.2089 38 1 0.1913 5.0635 -1.2688 39 1 3.2717 -1.0928 0.0580 40 1 0.6520 -2.0848 1.3106 41 1 2.2620 -1.9319 2.0815 42 1 1.3151 -4.3060 1.0121 43 1 3.0517 -3.9003 1.1088 44 1 3.1630 -3.8318 -1.1730 45 1 1.4268 -4.2390 -1.2697 46 1 2.4642 -1.8071 -2.0990 47 1 0.7877 -2.0017 -1.4976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282991874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:24 Heat of formation + Delta-G solvation = 35.836840 kcal Electronic energy + Delta-G solvation = -27980.032520 eV Core-core repulsion = 24356.959553 eV Total energy + Delta-G solvation = -3623.072967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72153 -40.88082 -38.91225 -37.21772 -35.73323 -34.65153 -33.38010 -32.46533 -30.08107 -29.59779 -28.78882 -27.71313 -26.51513 -24.85780 -24.23486 -23.25105 -21.36970 -21.10064 -20.32723 -18.90161 -18.06214 -17.92313 -17.56178 -17.09013 -16.65091 -16.59222 -16.23448 -16.13267 -15.64673 -15.27628 -14.59887 -14.53669 -14.40034 -14.31957 -14.16687 -14.04700 -13.95604 -13.70844 -13.32945 -13.03405 -12.81558 -12.75837 -12.54397 -12.35095 -12.16033 -12.09814 -12.00159 -11.66652 -11.58130 -11.23823 -11.16649 -10.88124 -10.73295 -10.48084 -10.40306 -9.95998 -9.60930 -9.00306 -8.18892 -6.29761 0.12532 0.32467 1.39717 1.44148 1.51901 1.93053 2.25455 2.41051 2.84439 3.08178 3.18712 3.54332 3.74236 3.74886 3.88672 3.90407 3.98575 4.07584 4.10669 4.36050 4.42466 4.49107 4.50945 4.54442 4.64816 4.68045 4.72585 4.77430 4.82738 4.85683 4.91065 4.97355 5.10199 5.18070 5.18835 5.26492 5.30134 5.33735 5.36855 5.49634 5.53140 5.64972 5.74782 5.77489 5.98347 6.17198 6.22777 6.71320 7.00806 7.09286 7.36200 7.75550 8.83253 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008849 B = 0.006073 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.506782 B = 4609.483890 C = 6968.538334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.611 5.611 3 C 0.708 3.292 4 O -0.645 6.645 5 N -0.615 5.615 6 C 0.206 3.794 7 C -0.530 4.530 8 H 0.041 0.959 9 C 0.035 3.965 10 N -0.905 5.905 11 Si 0.945 3.055 12 H -0.279 1.279 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.177 3.823 16 C -0.155 4.155 17 C -0.067 4.067 18 C -0.168 4.168 19 C 0.090 3.910 20 N -0.509 5.509 21 C 0.102 3.898 22 C 0.147 3.853 23 C -0.136 4.136 24 C -0.114 4.114 25 C -0.113 4.113 26 C -0.128 4.128 27 H 0.128 0.872 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.016 0.984 31 H 0.077 0.923 32 H 0.270 0.730 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.165 0.835 37 H 0.187 0.813 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.555 -5.638 -8.401 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.345 5.345 3 C 0.411 3.589 4 O -0.529 6.529 5 N -0.348 5.348 6 C 0.086 3.914 7 C -0.569 4.569 8 H 0.059 0.941 9 C -0.167 4.167 10 N -0.543 5.543 11 Si 0.771 3.229 12 H -0.205 1.205 13 H -0.201 1.201 14 H -0.201 1.201 15 C 0.052 3.948 16 C -0.158 4.158 17 C -0.094 4.094 18 C -0.188 4.188 19 C -0.067 4.067 20 N -0.218 5.218 21 C -0.054 4.054 22 C 0.043 3.957 23 C -0.174 4.174 24 C -0.152 4.152 25 C -0.151 4.151 26 C -0.167 4.167 27 H 0.145 0.855 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.034 0.966 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.148 0.852 36 H 0.183 0.817 37 H 0.204 0.796 38 H 0.168 0.832 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.223 -5.114 -8.680 11.842 hybrid contribution 0.338 -0.301 1.515 1.581 sum 6.561 -5.415 -7.165 11.122 Atomic orbital electron populations 1.23129 0.79199 1.01811 1.05251 1.46805 1.06869 1.04150 1.76655 1.15984 0.84392 0.81351 0.77169 1.90716 1.13300 1.87047 1.61838 1.47266 1.13877 1.03559 1.70126 1.20655 0.76955 0.98904 0.94858 1.21402 0.92247 1.46891 0.96360 0.94052 1.25449 0.95195 0.94897 1.01177 1.69987 0.98418 1.48236 1.37699 0.85748 0.77592 0.78401 0.81125 1.20483 1.20137 1.20097 1.20043 0.98433 0.85370 0.90905 1.21353 0.96934 0.99648 0.97905 1.21717 0.98165 0.95941 0.93561 1.22445 1.00174 0.99514 0.96622 1.23334 0.89839 0.93650 0.99926 1.67713 1.29693 1.22253 1.02110 1.22701 0.95433 0.94354 0.92931 1.22024 0.96152 0.81499 0.96005 1.22731 1.01418 0.95858 0.97425 1.22044 1.02411 0.94913 0.95828 1.22036 1.02671 0.94906 0.95448 1.22664 1.01546 0.95760 0.96733 0.85479 0.94261 0.91560 0.96605 0.90650 0.92069 0.89348 0.90213 0.85235 0.81711 0.79625 0.83197 0.89996 0.91595 0.92751 0.90347 0.90837 0.90645 0.90117 0.92006 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.85 7.20 127.77 0.92 2.77 16 2 N -0.61 -24.38 2.88 -911.45 -2.63 -27.01 16 3 C 0.71 31.45 7.82 179.06 1.40 32.85 16 4 O -0.64 -30.44 15.30 -4.00 -0.06 -30.50 16 5 N -0.61 -26.57 2.53 -848.59 -2.15 -28.72 16 6 C 0.21 9.61 4.78 85.63 0.41 10.02 16 7 C -0.53 -26.71 6.89 25.60 0.18 -26.54 16 8 H 0.04 2.22 7.81 -2.91 -0.02 2.20 16 9 C 0.03 1.74 5.01 84.65 0.42 2.17 16 10 N -0.91 -46.79 13.29 21.45 0.28 -46.51 16 11 Si 0.95 40.65 29.54 68.60 2.03 42.68 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 15 C 0.18 6.66 5.59 85.63 0.48 7.14 16 16 C -0.15 -5.28 5.48 -19.77 -0.11 -5.38 16 17 C -0.07 -2.06 9.86 22.47 0.22 -1.84 16 18 C -0.17 -4.11 10.11 22.36 0.23 -3.88 16 19 C 0.09 2.27 11.18 84.69 0.95 3.22 16 20 N -0.51 -16.27 10.36 -195.85 -2.03 -18.30 16 21 C 0.10 3.46 10.86 84.67 0.92 4.38 16 22 C 0.15 4.94 3.24 46.31 0.15 5.09 16 23 C -0.14 -4.02 6.32 31.69 0.20 -3.82 16 24 C -0.11 -2.45 6.80 31.32 0.21 -2.24 16 25 C -0.11 -2.28 6.80 31.32 0.21 -2.07 16 26 C -0.13 -3.44 6.35 31.67 0.20 -3.24 16 27 H 0.13 5.85 2.97 -2.39 -0.01 5.85 16 28 H 0.04 1.60 6.60 -2.39 -0.02 1.58 16 29 H 0.07 2.29 6.03 -2.39 -0.01 2.27 16 30 H 0.02 0.78 7.92 -2.39 -0.02 0.76 16 31 H 0.08 3.59 3.18 -29.90 -0.09 3.50 16 32 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 33 H 0.09 3.19 7.98 -2.39 -0.02 3.17 16 34 H 0.08 3.04 7.25 -2.39 -0.02 3.02 16 35 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.19 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.15 5.06 8.06 -2.91 -0.02 5.04 16 39 H 0.08 3.03 7.03 -2.39 -0.02 3.01 16 40 H 0.07 2.07 6.50 -2.39 -0.02 2.05 16 41 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 45 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 47 H 0.07 1.82 6.86 -2.38 -0.02 1.80 16 Total: -1.00 -60.62 369.05 3.32 -57.30 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.88 Total: 32.43 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 6.99 Total: 18.63 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -6.52 Total: -120.53 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.06 Total: -30.50 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -60.62 3.32 -57.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282991874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.133 kcal (2) G-P(sol) polarization free energy of solvation -60.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds