Wall clock time and date at job start Tue Mar 31 2020 11:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46890 * 111.00070 * 2 1 4 4 C 1.50702 * 109.47198 * 293.95076 * 3 2 1 5 5 C 1.38234 * 119.99895 * 269.72876 * 4 3 2 6 6 C 1.38240 * 120.00062 * 180.32314 * 5 4 3 7 7 C 1.38235 * 119.99708 * 359.94741 * 6 5 4 8 8 C 1.38234 * 120.00204 * 0.02562 * 7 6 5 9 9 C 1.38230 * 119.99885 * 0.02562 * 8 7 6 10 10 C 1.46906 * 110.99627 * 123.95199 * 2 1 3 11 11 C 1.53950 * 113.73913 * 154.78966 * 10 2 1 12 12 N 1.47813 * 86.03452 * 222.08221 * 11 10 2 13 13 C 1.34774 * 134.45832 * 204.64578 * 12 11 10 14 14 O 1.21587 * 120.00125 * 179.86569 * 13 12 11 15 15 N 1.34772 * 120.00031 * 359.86429 * 13 12 11 16 16 C 1.46501 * 120.00533 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47394 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47134 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99742 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00115 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99797 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99879 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47524 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46801 * 120.00606 * 22 20 18 25 25 H 1.48501 * 109.47219 * 239.99991 * 22 20 18 26 26 C 1.47580 * 91.05159 * 24.54951 * 12 11 10 27 27 H 1.09000 * 109.46782 * 60.00470 * 1 2 3 28 28 H 1.09004 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47541 * 300.00269 * 1 2 3 30 30 H 1.09003 * 109.47170 * 173.95308 * 3 2 1 31 31 H 1.09001 * 109.47716 * 53.95359 * 3 2 1 32 32 H 1.08001 * 120.00279 * 0.27436 * 5 4 3 33 33 H 1.07997 * 119.99852 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.99766 * 180.02562 * 7 6 5 35 35 H 1.07992 * 119.99701 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.00356 * 179.97438 * 9 8 7 37 37 H 1.08996 * 112.94314 * 286.37531 * 10 2 1 38 38 H 1.09000 * 113.76792 * 336.34300 * 11 10 2 39 39 H 1.08996 * 113.77114 * 107.74779 * 11 10 2 40 40 H 0.97009 * 119.99937 * 0.02562 * 15 13 12 41 41 H 1.09005 * 109.46588 * 300.00168 * 16 15 13 42 42 H 1.08996 * 109.46760 * 59.99610 * 16 15 13 43 43 H 1.09005 * 109.47047 * 299.99466 * 17 16 15 44 44 H 1.08996 * 109.47829 * 59.99844 * 17 16 15 45 45 H 0.97004 * 119.99320 * 179.97438 * 21 20 18 46 46 H 1.09006 * 113.76900 * 221.15457 * 26 12 11 47 47 H 1.09002 * 113.77170 * 89.75528 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6370 2.0470 -1.2985 5 6 2.4966 1.9695 -2.3782 6 6 2.1710 2.5950 -3.5673 7 6 0.9852 3.2969 -3.6768 8 6 0.1253 3.3740 -2.5972 9 6 0.4514 2.7494 -1.4079 10 6 1.9954 -0.7660 1.1377 11 6 3.4078 -1.3319 0.9035 12 7 2.9078 -2.5667 1.5439 13 6 3.4873 -3.5890 2.2039 14 8 2.8052 -4.4976 2.6369 15 7 4.8228 -3.6041 2.3840 16 6 5.4529 -4.7155 3.1010 17 6 6.9646 -4.4888 3.1661 18 6 7.6127 -5.6325 3.9031 19 1 7.0068 -6.4399 4.2871 20 6 8.9790 -5.6479 4.0873 21 7 9.7166 -4.6644 3.6201 22 14 9.7822 -7.0652 5.0015 23 1 8.7408 -8.0361 5.4229 24 1 10.7566 -7.7417 4.1080 25 1 10.4882 -6.5446 6.1997 26 6 1.5198 -2.2297 1.1726 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.0797 1.3443 0.1083 31 1 1.5611 1.9273 0.8309 32 1 3.4231 1.4211 -2.2927 33 1 2.8428 2.5348 -4.4107 34 1 0.7306 3.7852 -4.6059 35 1 -0.8009 3.9227 -2.6827 36 1 -0.2201 2.8099 -0.5643 37 1 1.8834 -0.2453 2.0887 38 1 3.6627 -1.4552 -0.1491 39 1 4.1850 -0.8235 1.4740 40 1 5.3670 -2.8789 2.0389 41 1 5.0501 -4.7701 4.1125 42 1 5.2472 -5.6489 2.5771 43 1 7.3676 -4.4339 2.1548 44 1 7.1699 -3.5555 3.6902 45 1 10.6779 -4.6752 3.7500 46 1 0.7924 -2.4367 1.9576 47 1 1.2189 -2.6172 0.1992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287820486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:47 Heat of formation + Delta-G solvation = 35.310843 kcal Electronic energy + Delta-G solvation = -25300.919065 eV Core-core repulsion = 21677.823289 eV Total energy + Delta-G solvation = -3623.095776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53370 -39.61744 -38.26740 -35.98397 -34.72066 -32.80284 -31.88660 -31.22912 -29.98303 -28.33134 -27.70527 -25.95532 -24.81623 -24.00790 -22.83924 -21.50387 -20.99740 -20.64137 -19.37605 -17.82741 -17.10498 -16.73370 -16.44853 -15.92676 -15.70580 -15.51465 -14.99373 -14.78685 -14.55858 -14.35247 -13.91072 -13.68772 -13.52080 -13.25211 -13.12190 -12.92483 -12.77666 -12.66175 -12.28589 -12.24727 -12.05937 -11.97286 -11.30201 -11.21846 -11.16520 -11.03532 -10.92891 -10.59980 -10.31048 -9.88552 -9.53937 -9.23064 -9.22730 -9.14215 -8.79911 -8.68827 -8.45162 -8.17096 -6.07957 -4.10320 0.99463 1.09472 2.65796 3.29593 3.30446 3.37111 3.42759 3.58154 3.82779 4.01200 4.26742 4.42629 4.46823 4.49661 4.69124 4.76348 4.80535 4.89129 4.99086 5.00085 5.17027 5.21927 5.28247 5.29241 5.33885 5.36323 5.40848 5.45235 5.60943 5.67293 5.72136 5.73238 5.78378 6.12763 6.20219 6.28111 6.37693 6.41874 6.58565 6.64544 6.71019 6.79001 7.03448 7.45249 7.60698 7.65035 7.91513 8.27925 8.42557 8.94659 9.02803 9.54335 11.03783 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.001986 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.756142 B =14092.881094 C =15065.778274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.523 5.523 3 C 0.091 3.909 4 C -0.076 4.076 5 C -0.097 4.097 6 C -0.121 4.121 7 C -0.122 4.122 8 C -0.123 4.123 9 C -0.114 4.114 10 C 0.041 3.959 11 C 0.114 3.886 12 N -0.668 5.668 13 C 0.726 3.274 14 O -0.595 6.595 15 N -0.735 5.735 16 C 0.140 3.860 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.141 3.859 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.392 0.608 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.261 0.739 46 H 0.078 0.922 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.341 19.847 -13.486 30.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.248 5.248 3 C -0.036 4.036 4 C -0.077 4.077 5 C -0.115 4.115 6 C -0.139 4.139 7 C -0.140 4.140 8 C -0.141 4.141 9 C -0.133 4.133 10 C -0.068 4.068 11 C -0.009 4.009 12 N -0.409 5.409 13 C 0.428 3.572 14 O -0.474 6.474 15 N -0.388 5.388 16 C 0.018 3.982 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.079 0.921 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.017 3.983 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.225 0.775 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.374 18.762 -13.436 30.131 hybrid contribution 0.558 0.091 0.921 1.081 sum -18.816 18.853 -12.515 29.429 Atomic orbital electron populations 1.22476 0.86901 1.02569 1.00992 1.62183 1.08358 1.12824 1.41439 1.21077 1.00941 0.87856 0.93709 1.19706 0.94806 0.97609 0.95545 1.21074 0.99627 0.98374 0.92469 1.21188 0.97079 0.97819 0.97827 1.21164 0.94713 0.99469 0.98664 1.21107 0.99658 0.99976 0.93369 1.21058 0.96433 0.97915 0.97875 1.23762 0.96408 0.93791 0.92887 1.23195 0.95870 0.82988 0.98878 1.48876 1.09697 1.23199 1.59178 1.15494 0.82539 0.80416 0.78710 1.90891 1.63064 1.36779 1.56667 1.45484 1.04671 1.27546 1.61087 1.21612 0.95374 0.86638 0.94616 1.19329 0.87277 0.97999 0.97855 1.21095 0.92187 1.06651 1.35861 0.92140 1.25004 0.97390 0.96239 0.95750 1.69972 1.05690 1.31686 1.46005 0.86449 0.79357 0.82262 0.79452 1.19564 1.20954 1.20961 1.22938 0.84742 0.90057 1.00583 0.90769 0.90978 0.95412 0.89489 0.93646 0.85768 0.86062 0.86294 0.86260 0.86425 0.90208 0.89028 0.90299 0.77461 0.92786 0.92749 0.95955 0.95986 0.92937 0.90362 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 8.96 60.06 0.54 0.66 16 2 N -0.52 -4.01 4.72 -238.24 -1.12 -5.13 16 3 C 0.09 0.63 5.09 -4.98 -0.03 0.61 16 4 C -0.08 -0.56 4.88 -104.62 -0.51 -1.08 16 5 C -0.10 -0.73 9.70 -39.58 -0.38 -1.12 16 6 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 7 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 8 C -0.12 -0.81 10.05 -39.59 -0.40 -1.20 16 9 C -0.11 -0.78 7.97 -39.59 -0.32 -1.10 16 10 C 0.04 0.35 3.36 -69.91 -0.23 0.12 16 11 C 0.11 1.15 7.99 -2.84 -0.02 1.13 16 12 N -0.67 -9.47 3.61 -184.08 -0.66 -10.14 16 13 C 0.73 13.83 8.76 -86.92 -0.76 13.07 16 14 O -0.60 -13.75 17.07 5.29 0.09 -13.66 16 15 N -0.73 -13.92 5.56 -65.23 -0.36 -14.28 16 16 C 0.14 3.13 5.61 -4.04 -0.02 3.11 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 22 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 C 0.14 1.55 7.37 -2.97 -0.02 1.53 16 27 H 0.07 0.50 6.17 -51.93 -0.32 0.18 16 28 H 0.07 0.48 7.00 -51.93 -0.36 0.11 16 29 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.57 7.81 -51.93 -0.41 0.16 16 31 H 0.05 0.29 8.06 -51.93 -0.42 -0.12 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.12 0.66 8.02 -52.49 -0.42 0.23 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.39 6.53 8.08 -40.82 -0.33 6.20 16 41 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.09 0.91 7.94 -51.93 -0.41 0.50 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -33.73 389.24 -11.70 -45.43 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.71 Total: 0.87 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -3.51 Total: 0.06 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -1.41 Total: -55.12 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.73 -11.70 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287820486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.739 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds