Wall clock time and date at job start Tue Mar 31 2020 11:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46890 * 111.00070 * 2 1 4 4 C 1.50702 * 109.47198 * 293.95076 * 3 2 1 5 5 C 1.38234 * 119.99895 * 269.72876 * 4 3 2 6 6 C 1.38240 * 120.00062 * 180.32314 * 5 4 3 7 7 C 1.38235 * 119.99708 * 359.94741 * 6 5 4 8 8 C 1.38234 * 120.00204 * 0.02562 * 7 6 5 9 9 C 1.38230 * 119.99885 * 0.02562 * 8 7 6 10 10 C 1.46906 * 110.99627 * 123.95199 * 2 1 3 11 11 C 1.53950 * 113.73913 * 154.78966 * 10 2 1 12 12 N 1.47813 * 86.03452 * 222.08221 * 11 10 2 13 13 C 1.34774 * 134.45832 * 204.64578 * 12 11 10 14 14 O 1.21587 * 120.00125 * 179.86569 * 13 12 11 15 15 N 1.34772 * 120.00031 * 359.86429 * 13 12 11 16 16 C 1.46501 * 120.00533 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47394 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47134 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99742 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00115 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99797 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99879 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47524 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46801 * 120.00606 * 22 20 18 25 25 H 1.48501 * 109.47219 * 239.99991 * 22 20 18 26 26 C 1.47580 * 91.05159 * 24.54951 * 12 11 10 27 27 H 1.09000 * 109.46782 * 60.00470 * 1 2 3 28 28 H 1.09004 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47541 * 300.00269 * 1 2 3 30 30 H 1.09003 * 109.47170 * 173.95308 * 3 2 1 31 31 H 1.09001 * 109.47716 * 53.95359 * 3 2 1 32 32 H 1.08001 * 120.00279 * 0.27436 * 5 4 3 33 33 H 1.07997 * 119.99852 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.99766 * 180.02562 * 7 6 5 35 35 H 1.07992 * 119.99701 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.00356 * 179.97438 * 9 8 7 37 37 H 1.08996 * 112.94314 * 286.37531 * 10 2 1 38 38 H 1.09000 * 113.76792 * 336.34300 * 11 10 2 39 39 H 1.08996 * 113.77114 * 107.74779 * 11 10 2 40 40 H 0.97009 * 119.99937 * 0.02562 * 15 13 12 41 41 H 1.09005 * 109.46588 * 300.00168 * 16 15 13 42 42 H 1.08996 * 109.46760 * 59.99610 * 16 15 13 43 43 H 1.09005 * 109.47047 * 299.99466 * 17 16 15 44 44 H 1.08996 * 109.47829 * 59.99844 * 17 16 15 45 45 H 0.97004 * 119.99320 * 179.97438 * 21 20 18 46 46 H 1.09006 * 113.76900 * 221.15457 * 26 12 11 47 47 H 1.09002 * 113.77170 * 89.75528 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6370 2.0470 -1.2985 5 6 2.4966 1.9695 -2.3782 6 6 2.1710 2.5950 -3.5673 7 6 0.9852 3.2969 -3.6768 8 6 0.1253 3.3740 -2.5972 9 6 0.4514 2.7494 -1.4079 10 6 1.9954 -0.7660 1.1377 11 6 3.4078 -1.3319 0.9035 12 7 2.9078 -2.5667 1.5439 13 6 3.4873 -3.5890 2.2039 14 8 2.8052 -4.4976 2.6369 15 7 4.8228 -3.6041 2.3840 16 6 5.4529 -4.7155 3.1010 17 6 6.9646 -4.4888 3.1661 18 6 7.6127 -5.6325 3.9031 19 1 7.0068 -6.4399 4.2871 20 6 8.9790 -5.6479 4.0873 21 7 9.7166 -4.6644 3.6201 22 14 9.7822 -7.0652 5.0015 23 1 8.7408 -8.0361 5.4229 24 1 10.7566 -7.7417 4.1080 25 1 10.4882 -6.5446 6.1997 26 6 1.5198 -2.2297 1.1726 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.0797 1.3443 0.1083 31 1 1.5611 1.9273 0.8309 32 1 3.4231 1.4211 -2.2927 33 1 2.8428 2.5348 -4.4107 34 1 0.7306 3.7852 -4.6059 35 1 -0.8009 3.9227 -2.6827 36 1 -0.2201 2.8099 -0.5643 37 1 1.8834 -0.2453 2.0887 38 1 3.6627 -1.4552 -0.1491 39 1 4.1850 -0.8235 1.4740 40 1 5.3670 -2.8789 2.0389 41 1 5.0501 -4.7701 4.1125 42 1 5.2472 -5.6489 2.5771 43 1 7.3676 -4.4339 2.1548 44 1 7.1699 -3.5555 3.6902 45 1 10.6779 -4.6752 3.7500 46 1 0.7924 -2.4367 1.9576 47 1 1.2189 -2.6172 0.1992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287820486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:46 Heat of formation + Delta-G solvation = 13.726547 kcal Electronic energy + Delta-G solvation = -25301.855030 eV Core-core repulsion = 21677.823289 eV Total energy + Delta-G solvation = -3624.031741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56686 -40.31197 -39.40809 -36.81765 -36.47780 -34.80313 -32.55388 -31.76354 -31.63041 -29.50916 -28.43140 -26.86240 -26.40741 -24.99001 -23.33432 -22.93590 -22.13472 -21.55761 -20.54323 -19.06313 -18.48098 -17.63540 -17.51849 -17.24411 -16.51691 -16.47855 -16.23698 -16.13910 -15.66249 -15.32202 -15.08849 -14.79720 -14.46586 -14.28804 -14.16836 -14.10199 -13.59432 -13.47139 -13.34415 -13.22478 -13.18109 -12.94159 -12.60391 -12.58750 -12.51030 -12.25979 -11.85118 -11.75294 -11.72198 -11.65450 -11.46970 -11.16708 -10.61350 -10.22982 -9.73293 -9.66572 -9.55096 -9.29081 -8.24351 -6.34594 0.48540 0.59193 1.40641 1.41307 1.45638 1.56211 2.10462 2.40368 2.75954 2.95329 3.10360 3.20184 3.28252 3.89777 3.95927 4.01422 4.19439 4.24358 4.32961 4.35949 4.42527 4.43540 4.49468 4.51643 4.56306 4.59207 4.68115 4.71318 4.76761 4.80259 4.84147 4.87365 5.02036 5.11456 5.19860 5.24662 5.29600 5.50701 5.57714 5.63707 5.71184 5.76296 5.78881 6.00654 6.03482 6.15062 6.20592 6.23542 6.78425 6.99698 7.34631 7.54511 8.87827 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.001986 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.756142 B =14092.881094 C =15065.778274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.527 5.527 3 C 0.093 3.907 4 C -0.085 4.085 5 C -0.112 4.112 6 C -0.133 4.133 7 C -0.131 4.131 8 C -0.131 4.131 9 C -0.120 4.120 10 C 0.063 3.937 11 C 0.114 3.886 12 N -0.670 5.670 13 C 0.722 3.278 14 O -0.642 6.642 15 N -0.730 5.730 16 C 0.161 3.839 17 C 0.025 3.975 18 C -0.546 4.546 19 H 0.059 0.941 20 C 0.006 3.994 21 N -0.926 5.926 22 Si 0.967 3.033 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.136 3.864 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.404 0.596 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.008 0.992 44 H 0.009 0.991 45 H 0.266 0.734 46 H 0.077 0.923 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.900 20.818 -13.822 31.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.252 5.252 3 C -0.033 4.033 4 C -0.086 4.086 5 C -0.131 4.131 6 C -0.151 4.151 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.139 4.139 10 C -0.046 4.046 11 C -0.009 4.009 12 N -0.410 5.410 13 C 0.424 3.576 14 O -0.525 6.525 15 N -0.385 5.385 16 C 0.037 3.963 17 C -0.012 4.012 18 C -0.584 4.584 19 H 0.077 0.923 20 C -0.192 4.192 21 N -0.565 5.565 22 Si 0.791 3.209 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.201 1.201 26 C 0.013 3.987 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.239 0.761 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.955 19.804 -13.814 31.325 hybrid contribution 0.668 -0.104 0.929 1.149 sum -19.287 19.701 -12.885 30.433 Atomic orbital electron populations 1.22487 0.86180 1.02734 1.01450 1.62142 1.09018 1.13367 1.40667 1.21083 1.01155 0.87281 0.93820 1.19798 0.95131 0.98012 0.95638 1.21237 1.00012 0.98895 0.92926 1.21418 0.97629 0.97912 0.98142 1.21442 0.94585 0.99362 0.99489 1.21391 1.00321 0.99903 0.93240 1.21252 0.96450 0.97736 0.98453 1.23465 0.94891 0.92607 0.93658 1.23463 0.97247 0.80927 0.99214 1.48962 1.11568 1.22649 1.57819 1.15606 0.82035 0.80939 0.79004 1.90848 1.63909 1.39003 1.58731 1.45173 1.05145 1.27087 1.61047 1.21103 0.93562 0.87349 0.94332 1.19122 0.88998 0.96705 0.96411 1.21482 0.92942 1.07476 1.36519 0.92308 1.25881 0.97947 0.98924 0.96477 1.70068 1.06191 1.33396 1.46885 0.85371 0.78321 0.78931 0.78261 1.19023 1.20185 1.20141 1.23182 0.83205 0.91536 1.00785 0.90696 0.90990 0.94539 0.89187 0.92920 0.85550 0.85013 0.84736 0.84590 0.85280 0.89442 0.88112 0.88991 0.76068 0.93820 0.93915 0.97332 0.97240 0.92518 0.90500 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.96 127.69 1.14 1.36 16 2 N -0.53 -6.97 4.72 -907.65 -4.28 -11.25 16 3 C 0.09 1.10 5.09 85.56 0.44 1.54 16 4 C -0.09 -1.13 4.88 -19.87 -0.10 -1.23 16 5 C -0.11 -1.58 9.70 22.27 0.22 -1.36 16 6 C -0.13 -1.74 10.05 22.27 0.22 -1.51 16 7 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 8 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 9 C -0.12 -1.44 7.97 22.27 0.18 -1.26 16 10 C 0.06 0.96 3.36 46.67 0.16 1.12 16 11 C 0.11 2.08 7.99 86.44 0.69 2.77 16 12 N -0.67 -18.37 3.61 -854.58 -3.09 -21.46 16 13 C 0.72 27.50 8.76 179.06 1.57 29.07 16 14 O -0.64 -30.13 17.07 -3.99 -0.07 -30.20 16 15 N -0.73 -27.79 5.56 -478.55 -2.66 -30.45 16 16 C 0.16 7.32 5.61 86.38 0.48 7.80 16 17 C 0.03 1.30 5.09 29.85 0.15 1.45 16 18 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 19 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.01 0.36 5.46 84.65 0.46 0.83 16 21 N -0.93 -54.55 13.29 21.45 0.28 -54.27 16 22 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 C 0.14 2.81 7.37 86.48 0.64 3.44 16 27 H 0.07 0.87 6.17 -2.39 -0.01 0.86 16 28 H 0.07 0.83 7.00 -2.38 -0.02 0.81 16 29 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.09 1.00 7.81 -2.39 -0.02 0.98 16 31 H 0.05 0.56 8.06 -2.39 -0.02 0.54 16 32 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.13 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.13 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 36 H 0.13 1.17 8.02 -2.91 -0.02 1.15 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.40 13.31 8.08 -92.70 -0.75 12.56 16 41 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.09 1.84 7.94 -2.39 -0.02 1.82 16 Total: -1.00 -72.20 389.24 -0.65 -72.86 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.20 Total: 18.03 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.93 Total: 10.64 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -9.74 Total: -117.42 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.07 Total: -30.20 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -72.20 -0.65 -72.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287820486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.583 kcal (2) G-P(sol) polarization free energy of solvation -72.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds