Wall clock time and date at job start Tue Mar 31 2020 11:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 120.00187 * 2 1 4 4 C 1.39678 * 119.99578 * 179.97438 * 2 1 3 5 5 C 1.38914 * 120.07700 * 5.51125 * 4 2 1 6 6 C 1.38102 * 119.92151 * 180.02562 * 5 4 2 7 7 C 1.38285 * 120.07700 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.92208 * 179.97438 * 7 6 5 9 9 N 1.46491 * 109.47273 * 89.99854 * 8 7 6 10 10 C 1.34775 * 120.00274 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99817 * 359.72189 * 10 9 8 12 12 C 1.50706 * 120.00076 * 180.02562 * 10 9 8 13 13 N 1.46500 * 109.47010 * 179.72602 * 12 10 9 14 14 C 1.36945 * 120.00013 * 269.99667 * 13 12 10 15 15 H 1.07990 * 120.00134 * 198.46019 * 14 13 12 16 16 C 1.38813 * 119.99633 * 18.45818 * 14 13 12 17 17 N 1.31623 * 120.00067 * 3.57257 * 16 14 13 18 18 Si 1.86797 * 119.99937 * 183.56669 * 16 14 13 19 19 H 1.48503 * 109.47097 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47091 * 119.99682 * 18 16 14 21 21 H 1.48494 * 109.47622 * 240.00222 * 18 16 14 22 22 C 1.46502 * 120.00369 * 89.99464 * 13 12 10 23 23 C 1.52996 * 117.50143 * 184.08299 * 22 13 12 24 24 C 1.53006 * 117.49795 * 115.42078 * 22 13 12 25 25 C 1.38280 * 120.14823 * 0.26993 * 7 6 5 26 26 C 1.38102 * 120.07686 * 359.45491 * 25 7 6 27 27 H 1.09002 * 109.46693 * 270.00498 * 1 2 3 28 28 H 1.08998 * 109.47166 * 30.00090 * 1 2 3 29 29 H 1.08998 * 109.47280 * 150.00416 * 1 2 3 30 30 H 1.09001 * 109.47084 * 185.28349 * 3 2 1 31 31 H 1.09007 * 109.46709 * 305.27526 * 3 2 1 32 32 H 1.08991 * 109.47741 * 65.27762 * 3 2 1 33 33 H 1.07999 * 120.03496 * 0.04838 * 5 4 2 34 34 H 1.08008 * 119.95943 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47198 * 329.99762 * 8 7 6 36 36 H 1.09001 * 109.46516 * 209.99912 * 8 7 6 37 37 H 0.97000 * 120.00075 * 359.97438 * 9 8 7 38 38 H 1.08994 * 109.46687 * 299.72194 * 12 10 9 39 39 H 1.09000 * 109.47014 * 59.72299 * 12 10 9 40 40 H 0.97005 * 119.99828 * 175.01717 * 17 16 14 41 41 H 1.08999 * 115.54819 * 329.76003 * 22 13 12 42 42 H 1.09003 * 117.49832 * 0.02562 * 23 22 13 43 43 H 1.08996 * 117.49883 * 145.02784 * 23 22 13 44 44 H 1.08998 * 117.49636 * 214.98535 * 24 22 13 45 45 H 1.09005 * 117.49424 * 359.97438 * 24 22 13 46 46 H 1.08005 * 119.95934 * 179.70332 * 25 7 6 47 47 H 1.07999 * 120.03924 * 180.27924 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1633 -1.2097 0.0005 5 6 1.4751 -2.4109 -0.1144 6 6 2.1687 -3.6051 -0.1129 7 6 3.5467 -3.6061 0.0032 8 6 4.3000 -4.9113 0.0050 9 7 4.6600 -5.2692 -1.3692 10 6 5.3435 -6.4049 -1.6127 11 8 5.6649 -7.1282 -0.6937 12 6 5.7144 -6.7728 -3.0264 13 7 6.4528 -8.0381 -3.0240 14 6 7.8175 -8.0342 -2.9103 15 1 8.3861 -8.9050 -3.2012 16 6 8.4700 -6.9108 -2.4214 17 7 7.7736 -5.8760 -2.0012 18 14 10.3365 -6.8677 -2.3595 19 1 10.8788 -8.1457 -2.8865 20 1 10.8333 -5.7404 -3.1889 21 1 10.7812 -6.6825 -0.9549 22 6 5.7314 -9.3076 -3.1431 23 6 6.5483 -10.5969 -3.0383 24 6 5.9897 -10.1524 -4.3924 25 6 4.2343 -2.4125 0.1239 26 6 3.5475 -1.2143 0.1175 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 3.2654 1.0716 -0.0946 31 1 1.8652 1.8800 -0.8390 32 1 2.0071 1.7982 0.9334 33 1 0.3989 -2.4108 -0.2051 34 1 1.6342 -4.5394 -0.2018 35 1 3.6714 -5.6931 0.4312 36 1 5.2057 -4.8072 0.6025 37 1 4.4065 -4.6887 -2.1038 38 1 4.8087 -6.8818 -3.6229 39 1 6.3389 -5.9884 -3.4540 40 1 8.2253 -5.1208 -1.5929 41 1 4.7228 -9.3157 -2.7298 42 1 7.6225 -10.5007 -2.8802 43 1 6.0770 -11.4535 -2.5563 44 1 5.1511 -10.7165 -4.8006 45 1 6.6961 -9.7633 -5.1258 46 1 5.3101 -2.4170 0.2193 47 1 4.0856 -0.2822 0.2073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298024455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:09 Heat of formation + Delta-G solvation = 69.028214 kcal Electronic energy + Delta-G solvation = -26241.734859 eV Core-core repulsion = 22620.101178 eV Total energy + Delta-G solvation = -3621.633681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.72613 -38.20466 -36.86941 -36.28298 -33.59790 -33.11679 -31.16539 -30.49556 -30.09029 -28.34877 -27.14392 -25.65464 -23.86669 -22.95495 -22.29839 -21.39805 -20.33531 -19.90680 -19.19869 -17.56468 -16.54329 -15.94869 -15.76714 -15.69276 -15.28876 -14.87167 -14.63853 -14.29468 -14.16751 -13.77125 -13.64929 -13.61664 -13.24824 -12.82033 -12.72083 -12.42047 -12.20159 -12.12847 -12.06455 -12.04798 -11.49119 -11.03112 -10.93323 -10.81491 -10.71270 -10.68368 -10.29284 -10.25609 -9.92087 -9.85072 -9.63271 -9.28469 -8.83762 -8.56492 -8.19541 -7.83088 -7.29830 -6.67259 -5.76109 -3.13963 1.53441 1.60349 2.96757 3.40511 3.47518 3.49197 3.86097 4.40212 4.47443 4.69706 4.73939 4.75365 4.94620 5.00611 5.06603 5.13200 5.18578 5.31123 5.31699 5.39337 5.45825 5.51668 5.57167 5.57674 5.75455 5.91332 6.01558 6.07072 6.16069 6.22850 6.25464 6.35717 6.47120 6.50752 6.53510 6.61108 6.88774 6.90418 6.95093 7.01437 7.09525 7.11347 7.35943 7.41964 7.66364 7.79621 8.36453 8.85186 9.23077 9.80662 9.99232 10.29124 11.31683 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.002861 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.136331 B = 9784.385641 C =10845.825410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.642 5.642 3 C 0.091 3.909 4 C 0.209 3.791 5 C -0.201 4.201 6 C -0.057 4.057 7 C -0.147 4.147 8 C 0.175 3.825 9 N -0.745 5.745 10 C 0.534 3.466 11 O -0.542 6.542 12 C 0.170 3.830 13 N -0.544 5.544 14 C -0.239 4.239 15 H 0.078 0.922 16 C 0.002 3.998 17 N -0.909 5.909 18 Si 0.913 3.087 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.132 3.868 23 C -0.196 4.196 24 C -0.227 4.227 25 C -0.052 4.052 26 C -0.201 4.201 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.386 0.614 38 H 0.030 0.970 39 H 0.113 0.887 40 H 0.254 0.746 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.124 0.876 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.597 12.361 1.640 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.356 5.356 3 C -0.052 4.052 4 C 0.109 3.891 5 C -0.223 4.223 6 C -0.076 4.076 7 C -0.149 4.149 8 C 0.051 3.949 9 N -0.400 5.400 10 C 0.321 3.679 11 O -0.417 6.417 12 C 0.041 3.959 13 N -0.260 5.260 14 C -0.368 4.368 15 H 0.096 0.904 16 C -0.194 4.194 17 N -0.556 5.556 18 Si 0.744 3.256 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.022 3.978 23 C -0.234 4.234 24 C -0.268 4.268 25 C -0.071 4.071 26 C -0.223 4.223 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.218 0.782 38 H 0.048 0.952 39 H 0.131 0.869 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.142 0.858 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.317 12.151 2.326 18.922 hybrid contribution 0.930 0.544 0.069 1.079 sum -13.387 12.695 2.395 18.604 Atomic orbital electron populations 1.21577 0.79796 1.02478 1.00963 1.46250 1.04823 1.03184 1.81302 1.21659 0.97896 0.85003 1.00658 1.17839 0.91275 0.85567 0.94412 1.20618 0.99480 0.91143 1.11049 1.20842 0.93557 0.97209 0.95983 1.19873 0.93681 0.95200 1.06154 1.19789 0.97450 0.91324 0.86363 1.46232 1.61019 1.26093 1.06646 1.21856 0.73337 0.78842 0.93880 1.90500 1.52101 1.52485 1.46580 1.20686 0.94101 0.90187 0.90968 1.43331 1.02844 0.98197 1.81606 1.19302 0.81433 1.00000 1.36050 0.90386 1.24875 0.98227 0.97040 0.99259 1.69599 1.33372 1.07947 1.44688 0.86035 0.85101 0.77267 0.77221 1.20520 1.21790 1.21794 1.20910 0.95029 0.84401 0.97435 1.23076 1.01217 0.98762 1.00389 1.23473 1.03286 1.07359 0.92645 1.20908 0.99762 0.91188 0.95227 1.20680 0.92160 0.98514 1.10900 0.93648 0.91849 0.91262 0.90307 0.92827 0.93306 0.86267 0.86085 0.92660 0.92135 0.78191 0.95192 0.86897 0.93523 0.89606 0.88446 0.90538 0.90711 0.89492 0.85814 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 10.35 59.85 0.62 1.30 16 2 N -0.64 -6.18 3.41 -187.55 -0.64 -6.82 16 3 C 0.09 0.68 10.59 59.84 0.63 1.31 16 4 C 0.21 2.48 6.54 -83.78 -0.55 1.93 16 5 C -0.20 -2.35 9.25 -39.38 -0.36 -2.72 16 6 C -0.06 -0.73 9.69 -39.61 -0.38 -1.11 16 7 C -0.15 -2.13 5.25 -104.59 -0.55 -2.68 16 8 C 0.18 3.10 5.80 -5.20 -0.03 3.07 16 9 N -0.74 -14.40 5.55 -61.48 -0.34 -14.74 16 10 C 0.53 12.77 5.72 -10.98 -0.06 12.71 16 11 O -0.54 -15.44 16.09 5.56 0.09 -15.35 16 12 C 0.17 4.01 5.47 -5.19 -0.03 3.98 16 13 N -0.54 -13.81 2.36 -167.02 -0.39 -14.21 16 14 C -0.24 -6.55 9.14 -15.06 -0.14 -6.69 16 15 H 0.08 2.12 6.00 -52.49 -0.31 1.80 16 16 C 0.00 0.06 5.28 -17.43 -0.09 -0.03 16 17 N -0.91 -25.36 8.16 55.49 0.45 -24.90 16 18 Si 0.91 22.27 29.56 -169.99 -5.02 17.24 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 C 0.13 2.93 6.56 -67.93 -0.45 2.49 16 23 C -0.20 -4.01 9.78 -26.69 -0.26 -4.27 16 24 C -0.23 -4.34 10.35 -26.69 -0.28 -4.62 16 25 C -0.05 -0.72 9.69 -39.62 -0.38 -1.10 16 26 C -0.20 -2.46 9.27 -39.38 -0.37 -2.83 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 29 H 0.07 0.48 6.00 -51.93 -0.31 0.16 16 30 H 0.08 0.59 5.39 -51.93 -0.28 0.31 16 31 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.12 1.16 6.04 -52.49 -0.32 0.84 16 34 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 35 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 37 H 0.39 6.61 8.46 -40.82 -0.35 6.27 16 38 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 39 H 0.11 2.84 6.33 -51.93 -0.33 2.51 16 40 H 0.25 7.05 8.32 -40.82 -0.34 6.71 16 41 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 42 H 0.10 2.15 6.21 -51.93 -0.32 1.83 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 46 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 47 H 0.12 1.26 5.83 -52.49 -0.31 0.96 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -32.83 379.18 -9.96 -42.79 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.14 Total: 9.54 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -2.67 Total: 0.74 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.92 Total: -60.68 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.09 Total: -15.35 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.83 -9.96 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298024455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.821 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds