Wall clock time and date at job start Tue Mar 31 2020 11:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 120.00187 * 2 1 4 4 C 1.39678 * 119.99578 * 179.97438 * 2 1 3 5 5 C 1.38914 * 120.07700 * 5.51125 * 4 2 1 6 6 C 1.38102 * 119.92151 * 180.02562 * 5 4 2 7 7 C 1.38285 * 120.07700 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.92208 * 179.97438 * 7 6 5 9 9 N 1.46491 * 109.47273 * 89.99854 * 8 7 6 10 10 C 1.34775 * 120.00274 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99817 * 359.72189 * 10 9 8 12 12 C 1.50706 * 120.00076 * 180.02562 * 10 9 8 13 13 N 1.46500 * 109.47010 * 179.72602 * 12 10 9 14 14 C 1.36945 * 120.00013 * 269.99667 * 13 12 10 15 15 H 1.07990 * 120.00134 * 198.46019 * 14 13 12 16 16 C 1.38813 * 119.99633 * 18.45818 * 14 13 12 17 17 N 1.31623 * 120.00067 * 3.57257 * 16 14 13 18 18 Si 1.86797 * 119.99937 * 183.56669 * 16 14 13 19 19 H 1.48503 * 109.47097 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47091 * 119.99682 * 18 16 14 21 21 H 1.48494 * 109.47622 * 240.00222 * 18 16 14 22 22 C 1.46502 * 120.00369 * 89.99464 * 13 12 10 23 23 C 1.52996 * 117.50143 * 184.08299 * 22 13 12 24 24 C 1.53006 * 117.49795 * 115.42078 * 22 13 12 25 25 C 1.38280 * 120.14823 * 0.26993 * 7 6 5 26 26 C 1.38102 * 120.07686 * 359.45491 * 25 7 6 27 27 H 1.09002 * 109.46693 * 270.00498 * 1 2 3 28 28 H 1.08998 * 109.47166 * 30.00090 * 1 2 3 29 29 H 1.08998 * 109.47280 * 150.00416 * 1 2 3 30 30 H 1.09001 * 109.47084 * 185.28349 * 3 2 1 31 31 H 1.09007 * 109.46709 * 305.27526 * 3 2 1 32 32 H 1.08991 * 109.47741 * 65.27762 * 3 2 1 33 33 H 1.07999 * 120.03496 * 0.04838 * 5 4 2 34 34 H 1.08008 * 119.95943 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47198 * 329.99762 * 8 7 6 36 36 H 1.09001 * 109.46516 * 209.99912 * 8 7 6 37 37 H 0.97000 * 120.00075 * 359.97438 * 9 8 7 38 38 H 1.08994 * 109.46687 * 299.72194 * 12 10 9 39 39 H 1.09000 * 109.47014 * 59.72299 * 12 10 9 40 40 H 0.97005 * 119.99828 * 175.01717 * 17 16 14 41 41 H 1.08999 * 115.54819 * 329.76003 * 22 13 12 42 42 H 1.09003 * 117.49832 * 0.02562 * 23 22 13 43 43 H 1.08996 * 117.49883 * 145.02784 * 23 22 13 44 44 H 1.08998 * 117.49636 * 214.98535 * 24 22 13 45 45 H 1.09005 * 117.49424 * 359.97438 * 24 22 13 46 46 H 1.08005 * 119.95934 * 179.70332 * 25 7 6 47 47 H 1.07999 * 120.03924 * 180.27924 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1633 -1.2097 0.0005 5 6 1.4751 -2.4109 -0.1144 6 6 2.1687 -3.6051 -0.1129 7 6 3.5467 -3.6061 0.0032 8 6 4.3000 -4.9113 0.0050 9 7 4.6600 -5.2692 -1.3692 10 6 5.3435 -6.4049 -1.6127 11 8 5.6649 -7.1282 -0.6937 12 6 5.7144 -6.7728 -3.0264 13 7 6.4528 -8.0381 -3.0240 14 6 7.8175 -8.0342 -2.9103 15 1 8.3861 -8.9050 -3.2012 16 6 8.4700 -6.9108 -2.4214 17 7 7.7736 -5.8760 -2.0012 18 14 10.3365 -6.8677 -2.3595 19 1 10.8788 -8.1457 -2.8865 20 1 10.8333 -5.7404 -3.1889 21 1 10.7812 -6.6825 -0.9549 22 6 5.7314 -9.3076 -3.1431 23 6 6.5483 -10.5969 -3.0383 24 6 5.9897 -10.1524 -4.3924 25 6 4.2343 -2.4125 0.1239 26 6 3.5475 -1.2143 0.1175 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 3.2654 1.0716 -0.0946 31 1 1.8652 1.8800 -0.8390 32 1 2.0071 1.7982 0.9334 33 1 0.3989 -2.4108 -0.2051 34 1 1.6342 -4.5394 -0.2018 35 1 3.6714 -5.6931 0.4312 36 1 5.2057 -4.8072 0.6025 37 1 4.4065 -4.6887 -2.1038 38 1 4.8087 -6.8818 -3.6229 39 1 6.3389 -5.9884 -3.4540 40 1 8.2253 -5.1208 -1.5929 41 1 4.7228 -9.3157 -2.7298 42 1 7.6225 -10.5007 -2.8802 43 1 6.0770 -11.4535 -2.5563 44 1 5.1511 -10.7165 -4.8006 45 1 6.6961 -9.7633 -5.1258 46 1 5.3101 -2.4170 0.2193 47 1 4.0856 -0.2822 0.2073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298024455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:08 Heat of formation + Delta-G solvation = 49.695297 kcal Electronic energy + Delta-G solvation = -26242.573197 eV Core-core repulsion = 22620.101178 eV Total energy + Delta-G solvation = -3622.472019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74110 -39.94754 -38.44429 -37.40583 -35.29187 -34.87196 -32.34967 -32.09384 -31.42671 -28.98188 -28.78581 -27.04091 -25.48757 -24.20086 -23.25141 -22.98771 -21.74302 -21.31067 -21.01360 -18.64251 -18.22385 -17.59386 -17.39326 -16.83483 -16.48228 -16.00356 -15.95175 -15.76689 -15.71920 -15.36886 -14.81953 -14.64751 -14.49940 -14.42830 -13.93419 -13.72391 -13.39343 -13.33132 -13.18093 -12.91777 -12.83312 -12.80661 -12.72914 -12.43002 -12.20034 -12.14656 -12.11551 -11.86289 -11.60227 -11.49642 -10.97348 -10.79228 -10.50827 -10.12950 -9.82765 -9.55342 -8.62298 -8.13978 -7.83104 -5.20952 0.55419 0.57159 1.44285 1.46991 1.55169 2.26947 2.45862 2.56217 2.78055 3.16055 3.23292 3.50502 3.55858 3.88781 3.96147 4.02113 4.27022 4.30165 4.36147 4.44660 4.52924 4.53686 4.54640 4.55567 4.61443 4.74199 4.77860 4.82557 4.90842 4.92479 4.93485 4.99780 5.02590 5.15993 5.20476 5.31715 5.36376 5.43666 5.49999 5.51199 5.68407 5.86179 5.91117 6.04448 6.35200 6.37690 6.56300 7.08503 7.25675 7.85737 8.14262 8.28717 9.21379 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.002861 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.136331 B = 9784.385641 C =10845.825410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.645 5.645 3 C 0.084 3.916 4 C 0.212 3.788 5 C -0.201 4.201 6 C -0.055 4.055 7 C -0.164 4.164 8 C 0.185 3.815 9 N -0.729 5.729 10 C 0.535 3.465 11 O -0.594 6.594 12 C 0.171 3.829 13 N -0.563 5.563 14 C -0.245 4.245 15 H 0.075 0.925 16 C -0.049 4.049 17 N -0.922 5.922 18 Si 0.969 3.031 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.304 1.304 22 C 0.100 3.900 23 C -0.197 4.197 24 C -0.193 4.193 25 C -0.061 4.061 26 C -0.206 4.206 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.051 0.949 36 H 0.030 0.970 37 H 0.399 0.601 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.244 0.756 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.654 13.259 0.730 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.356 5.356 3 C -0.058 4.058 4 C 0.109 3.891 5 C -0.224 4.224 6 C -0.074 4.074 7 C -0.167 4.167 8 C 0.061 3.939 9 N -0.383 5.383 10 C 0.323 3.677 11 O -0.473 6.473 12 C 0.042 3.958 13 N -0.280 5.280 14 C -0.374 4.374 15 H 0.093 0.907 16 C -0.243 4.243 17 N -0.570 5.570 18 Si 0.798 3.202 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.232 1.232 22 C -0.009 4.009 23 C -0.236 4.236 24 C -0.233 4.233 25 C -0.081 4.081 26 C -0.228 4.228 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.233 0.767 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.054 0.946 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.129 0.871 45 H 0.095 0.905 46 H 0.130 0.870 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.427 13.091 1.377 21.050 hybrid contribution 1.437 0.343 0.354 1.519 sum -14.990 13.434 1.731 20.203 Atomic orbital electron populations 1.21776 0.78239 1.03673 1.01741 1.46559 1.05999 1.02989 1.80080 1.21830 0.97669 0.84352 1.01983 1.18014 0.91255 0.86713 0.93138 1.20843 1.00636 0.90522 1.10359 1.20928 0.92691 0.98338 0.95451 1.19552 0.94322 0.93550 1.09265 1.19666 0.96378 0.93198 0.84694 1.46030 1.59437 1.24840 1.07998 1.21926 0.72931 0.79319 0.93538 1.90463 1.54517 1.54416 1.47931 1.20649 0.94733 0.89400 0.91067 1.43491 1.02557 0.99755 1.82152 1.19486 0.82863 0.99689 1.35411 0.90722 1.25543 1.01618 0.97257 0.99908 1.69773 1.33955 1.07906 1.45327 0.85167 0.81253 0.77520 0.76220 1.19647 1.21277 1.23197 1.21177 0.95413 0.83951 1.00311 1.23108 0.99919 0.98694 1.01835 1.23418 1.03484 1.05161 0.91269 1.20877 0.99411 0.91836 0.95961 1.20813 0.92766 0.98409 1.10831 0.93014 0.89900 0.90904 0.90617 0.91269 0.92089 0.83919 0.85141 0.93109 0.95184 0.76737 0.92079 0.88797 0.94580 0.88972 0.90686 0.87972 0.87068 0.90527 0.86961 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.35 127.77 1.32 2.29 16 2 N -0.64 -10.60 3.41 -747.29 -2.55 -13.15 16 3 C 0.08 1.02 10.59 127.77 1.35 2.38 16 4 C 0.21 4.58 6.54 38.21 0.25 4.83 16 5 C -0.20 -4.30 9.25 22.40 0.21 -4.09 16 6 C -0.05 -1.36 9.69 22.25 0.22 -1.15 16 7 C -0.16 -4.85 5.25 -19.84 -0.10 -4.96 16 8 C 0.18 6.84 5.80 85.64 0.50 7.34 16 9 N -0.73 -28.98 5.55 -466.80 -2.59 -31.57 16 10 C 0.53 26.31 5.72 87.66 0.50 26.81 16 11 O -0.59 -35.09 16.09 -3.04 -0.05 -35.14 16 12 C 0.17 8.16 5.47 85.64 0.47 8.63 16 13 N -0.56 -28.84 2.36 -682.33 -1.61 -30.44 16 14 C -0.24 -13.65 9.14 84.03 0.77 -12.88 16 15 H 0.08 4.11 6.00 -2.92 -0.02 4.09 16 16 C -0.05 -2.79 5.28 84.86 0.45 -2.34 16 17 N -0.92 -53.04 8.16 21.65 0.18 -52.86 16 18 Si 0.97 46.84 29.56 68.60 2.03 48.87 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 22 C 0.10 4.36 6.56 44.99 0.30 4.65 16 23 C -0.20 -7.83 9.78 30.62 0.30 -7.53 16 24 C -0.19 -6.95 10.35 30.62 0.32 -6.63 16 25 C -0.06 -1.74 9.69 22.25 0.22 -1.52 16 26 C -0.21 -4.88 9.27 22.40 0.21 -4.67 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 0.61 8.07 -2.39 -0.02 0.59 16 29 H 0.07 0.76 6.00 -2.39 -0.01 0.75 16 30 H 0.08 0.97 5.39 -2.39 -0.01 0.95 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.14 2.33 6.04 -2.91 -0.02 2.31 16 34 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 35 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 36 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 37 H 0.40 13.81 8.46 -92.71 -0.78 13.03 16 38 H 0.06 2.47 8.07 -2.39 -0.02 2.45 16 39 H 0.09 4.83 6.33 -2.39 -0.02 4.82 16 40 H 0.24 14.07 8.32 -92.70 -0.77 13.29 16 41 H 0.09 3.85 8.14 -2.39 -0.02 3.83 16 42 H 0.07 3.32 6.21 -2.39 -0.01 3.30 16 43 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 44 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 46 H 0.11 3.33 8.06 -2.91 -0.02 3.31 16 47 H 0.14 2.70 5.83 -2.91 -0.02 2.68 16 Total: -1.00 -72.44 379.18 2.87 -69.57 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.20 Total: 33.56 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 7.26 Total: 11.16 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -6.57 Total: -128.02 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.05 Total: -35.14 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -72.44 2.87 -69.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298024455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.261 kcal (2) G-P(sol) polarization free energy of solvation -72.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds