Wall clock time and date at job start Tue Mar 31 2020 11:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38872 * 119.99902 * 2 1 4 4 C 1.38954 * 120.17631 * 352.68263 * 3 2 1 5 5 C 1.37959 * 120.06333 * 180.02562 * 4 3 2 6 6 C 1.38600 * 120.42257 * 359.97438 * 5 4 3 7 7 C 1.37758 * 120.35611 * 0.02562 * 6 5 4 8 8 C 1.39736 * 119.92085 * 0.02562 * 7 6 5 9 9 C 1.47434 * 120.20316 * 179.97438 * 8 7 6 10 10 O 1.21597 * 119.99879 * 185.35680 * 9 8 7 11 11 N 1.34773 * 120.00148 * 5.35874 * 9 8 7 12 12 C 1.46507 * 120.00235 * 180.02562 * 11 9 8 13 13 C 1.52991 * 109.47148 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.50272 * 55.00249 * 13 12 11 15 15 C 1.53046 * 109.49769 * 175.06436 * 13 12 11 16 16 C 1.53035 * 109.54169 * 181.31539 * 15 13 12 17 17 C 1.53199 * 109.31272 * 298.63756 * 16 15 13 18 18 N 1.46923 * 108.77838 * 54.63028 * 17 16 15 19 19 C 1.36934 * 120.63231 * 126.38840 * 18 17 16 20 20 H 1.07999 * 120.00832 * 214.51691 * 19 18 17 21 21 C 1.38817 * 119.99619 * 34.51897 * 19 18 17 22 22 N 1.31617 * 120.00125 * 13.17954 * 21 19 18 23 23 Si 1.86803 * 120.00139 * 193.17318 * 21 19 18 24 24 H 1.48500 * 109.46570 * 90.00060 * 23 21 19 25 25 H 1.48493 * 109.47245 * 210.00352 * 23 21 19 26 26 H 1.48504 * 109.46844 * 330.00520 * 23 21 19 27 27 C 1.46937 * 118.76544 * 306.41693 * 18 17 16 28 28 H 1.08999 * 109.46707 * 59.99934 * 1 2 3 29 29 H 1.09000 * 109.46836 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46646 * 299.99978 * 1 2 3 31 31 H 0.96999 * 119.99958 * 180.02562 * 2 1 3 32 32 H 1.08004 * 119.96744 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.78560 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.82443 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.03904 * 179.74658 * 7 6 5 36 36 H 0.96998 * 120.00278 * 359.97438 * 11 9 8 37 37 H 1.09007 * 109.46754 * 300.00145 * 12 11 9 38 38 H 1.08995 * 109.47157 * 59.99773 * 12 11 9 39 39 H 1.08998 * 109.45604 * 301.33470 * 15 13 12 40 40 H 1.09001 * 109.45502 * 61.30670 * 15 13 12 41 41 H 1.09008 * 109.49903 * 58.58259 * 16 15 13 42 42 H 1.09001 * 109.50152 * 178.68391 * 16 15 13 43 43 H 1.08992 * 109.58986 * 174.42103 * 17 16 15 44 44 H 1.09004 * 109.58314 * 294.69978 * 17 16 15 45 45 H 0.96998 * 120.00652 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.56004 * 293.78770 * 27 18 17 47 47 H 1.09000 * 109.61412 * 173.35402 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1594 1.2027 0.0000 4 6 1.4768 2.4033 -0.1530 5 6 2.1690 3.5967 -0.1532 6 6 3.5465 3.6091 -0.0008 7 6 4.2406 2.4290 0.1522 8 6 3.5544 1.2118 0.1535 9 6 4.2911 -0.0549 0.3161 10 8 3.7050 -1.1158 0.2195 11 7 5.6142 -0.0368 0.5720 12 6 6.3464 -1.2955 0.7331 13 6 7.8201 -0.9958 1.0144 14 1 7.8986 -0.3342 1.8771 15 6 8.5610 -2.3032 1.3044 16 6 10.0281 -2.0015 1.6182 17 6 10.6798 -1.3359 0.4019 18 7 9.8879 -0.1565 0.0273 19 6 10.4815 1.0710 -0.0994 20 1 9.9401 1.9639 0.1764 21 6 11.7793 1.1677 -0.5825 22 7 12.3464 0.1288 -1.1582 23 14 12.7210 2.7724 -0.4155 24 1 13.4638 2.7787 0.8704 25 1 13.6798 2.9031 -1.5418 26 1 11.7677 3.9107 -0.4421 27 6 8.4466 -0.3182 -0.2084 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 0.4034 2.4021 -0.2727 33 1 1.6338 4.5272 -0.2720 34 1 4.0786 4.5489 -0.0020 35 1 5.3145 2.4444 0.2664 36 1 6.0819 0.8095 0.6488 37 1 5.9246 -1.8571 1.5667 38 1 6.2629 -1.8839 -0.1806 39 1 8.1013 -2.7991 2.1594 40 1 8.5028 -2.9546 0.4323 41 1 10.0863 -1.3301 2.4750 42 1 10.5497 -2.9307 1.8474 43 1 11.6951 -1.0295 0.6533 44 1 10.7061 -2.0402 -0.4296 45 1 13.2534 0.1962 -1.4954 46 1 8.2884 -0.9383 -1.0907 47 1 7.9885 0.6593 -0.3591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298178075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:02 Heat of formation + Delta-G solvation = 6.332073 kcal Electronic energy + Delta-G solvation = -26524.114938 eV Core-core repulsion = 22899.762548 eV Total energy + Delta-G solvation = -3624.352390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.45291 -38.62747 -37.63598 -35.83910 -34.65673 -33.03739 -31.56692 -30.42652 -30.07526 -29.81251 -26.27514 -25.45106 -25.21845 -23.56760 -22.10459 -21.62892 -20.93471 -20.48005 -19.12624 -17.94204 -17.16071 -16.66907 -16.06670 -15.69987 -15.34172 -14.96193 -14.76430 -14.53485 -14.41536 -14.09440 -13.81945 -13.70429 -13.44972 -13.27640 -12.79674 -12.64032 -12.36848 -12.30385 -12.19859 -12.13565 -12.03633 -11.36059 -11.25171 -11.00167 -10.76219 -10.53076 -10.30259 -10.23047 -10.19619 -9.97456 -9.81757 -9.54751 -9.42175 -9.17532 -8.87394 -8.49435 -7.53648 -6.59620 -5.81068 -3.31412 0.88502 1.50928 2.91703 3.30436 3.35390 3.42198 3.43275 3.45474 3.88866 4.45732 4.70003 4.71596 4.95083 4.97594 5.10253 5.20189 5.27896 5.30266 5.32090 5.42192 5.44791 5.47516 5.53375 5.61682 5.77388 5.82118 5.94460 5.97869 6.04768 6.23421 6.25392 6.32053 6.36709 6.45139 6.50849 6.58852 6.66994 6.69266 6.77422 6.84664 6.97014 7.19839 7.36037 7.58259 7.63136 7.77191 7.78080 8.34304 8.46739 9.20043 9.81025 10.42078 11.27015 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.003130 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.977022 B = 8942.135090 C =10464.107590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.733 5.733 3 C 0.273 3.727 4 C -0.216 4.216 5 C -0.044 4.044 6 C -0.192 4.192 7 C -0.032 4.032 8 C -0.226 4.226 9 C 0.571 3.429 10 O -0.562 6.562 11 N -0.716 5.716 12 C 0.127 3.873 13 C -0.119 4.119 14 H 0.073 0.927 15 C -0.099 4.099 16 C -0.142 4.142 17 C 0.173 3.827 18 N -0.590 5.590 19 C -0.259 4.259 20 H 0.062 0.938 21 C 0.009 3.991 22 N -0.899 5.899 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.154 3.846 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.421 0.579 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.404 0.596 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.019 0.981 45 H 0.254 0.746 46 H 0.019 0.981 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.335 1.895 4.171 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.163 3.837 4 C -0.238 4.238 5 C -0.063 4.063 6 C -0.212 4.212 7 C -0.052 4.052 8 C -0.234 4.234 9 C 0.361 3.639 10 O -0.443 6.443 11 N -0.366 5.366 12 C 0.004 3.996 13 C -0.139 4.139 14 H 0.091 0.909 15 C -0.137 4.137 16 C -0.181 4.181 17 C 0.047 3.953 18 N -0.312 5.312 19 C -0.389 4.389 20 H 0.080 0.920 21 C -0.190 4.190 22 N -0.543 5.543 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.203 1.203 27 C 0.027 3.973 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.269 0.731 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.240 0.760 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.037 0.963 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.712 1.044 4.016 21.123 hybrid contribution 0.954 0.956 0.043 1.352 sum -19.758 2.000 4.059 20.269 Atomic orbital electron populations 1.21604 0.80994 1.02496 1.00877 1.45479 1.05878 1.07597 1.78221 1.17790 0.89613 0.87056 0.89258 1.20642 0.99941 0.91130 1.12126 1.21059 0.94250 0.97238 0.93780 1.20827 0.94319 0.97998 1.08069 1.21150 0.99489 0.91266 0.93258 1.19333 0.92431 0.93599 1.18033 1.18081 0.81925 0.88252 0.75677 1.90351 1.67438 1.32554 1.53963 1.45923 1.08223 1.10684 1.71764 1.21483 0.91539 0.85142 1.01472 1.21967 0.91631 0.98762 1.01566 0.90888 1.21328 0.96368 0.95764 1.00232 1.22177 0.95037 0.99616 1.01287 1.20706 0.95572 0.87636 0.91366 1.43946 1.02030 1.05911 1.79322 1.19103 0.97674 0.84877 1.37252 0.92036 1.25231 0.99455 0.97121 0.97238 1.70007 1.14245 1.29827 1.40179 0.86305 0.79840 0.83402 0.77262 1.21370 1.21700 1.20312 1.20915 0.86463 0.97227 0.92648 0.92971 0.90790 0.92985 0.73071 0.85753 0.85928 0.85760 0.85538 0.76013 0.91919 0.91472 0.93452 0.92457 0.92751 0.93200 0.90472 0.96286 0.93573 0.96341 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.01 59.85 0.60 1.28 16 2 N -0.73 -8.70 5.73 -65.20 -0.37 -9.07 16 3 C 0.27 3.42 6.65 -83.62 -0.56 2.86 16 4 C -0.22 -2.22 9.30 -39.42 -0.37 -2.59 16 5 C -0.04 -0.42 10.03 -39.55 -0.40 -0.81 16 6 C -0.19 -1.96 10.02 -39.62 -0.40 -2.35 16 7 C -0.03 -0.37 9.52 -39.20 -0.37 -0.75 16 8 C -0.23 -3.00 5.89 -104.80 -0.62 -3.62 16 9 C 0.57 8.50 7.75 -12.52 -0.10 8.41 16 10 O -0.56 -9.42 13.64 5.28 0.07 -9.35 16 11 N -0.72 -10.01 5.28 -61.38 -0.32 -10.33 16 12 C 0.13 1.87 5.07 -4.04 -0.02 1.85 16 13 C -0.12 -1.94 2.37 -90.50 -0.21 -2.16 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.10 -1.61 5.17 -26.69 -0.14 -1.75 16 16 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 17 C 0.17 4.05 5.25 -3.71 -0.02 4.03 16 18 N -0.59 -14.39 2.96 -172.31 -0.51 -14.90 16 19 C -0.26 -6.94 9.53 -15.06 -0.14 -7.08 16 20 H 0.06 1.61 7.86 -52.49 -0.41 1.19 16 21 C 0.01 0.25 4.96 -17.43 -0.09 0.17 16 22 N -0.90 -25.91 11.45 55.49 0.64 -25.27 16 23 Si 0.90 21.31 29.57 -169.99 -5.03 16.29 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.15 3.10 5.60 -3.70 -0.02 3.08 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.42 5.71 5.36 -40.92 -0.22 5.50 16 32 H 0.12 1.02 6.71 -52.48 -0.35 0.67 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.13 1.31 6.44 -52.49 -0.34 0.97 16 36 H 0.40 5.16 5.76 -40.82 -0.23 4.93 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.08 2.02 6.44 -51.93 -0.33 1.69 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 0.97 7.14 -51.93 -0.37 0.59 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -30.97 370.52 -10.24 -41.21 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.29 Total: 8.07 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -3.01 Total: -2.23 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.57 Total: -59.57 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.35 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.97 -10.24 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298178075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.545 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds