Wall clock time and date at job start Tue Mar 31 2020 11:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38872 * 119.99902 * 2 1 4 4 C 1.38954 * 120.17631 * 352.68263 * 3 2 1 5 5 C 1.37959 * 120.06333 * 180.02562 * 4 3 2 6 6 C 1.38600 * 120.42257 * 359.97438 * 5 4 3 7 7 C 1.37758 * 120.35611 * 0.02562 * 6 5 4 8 8 C 1.39736 * 119.92085 * 0.02562 * 7 6 5 9 9 C 1.47434 * 120.20316 * 179.97438 * 8 7 6 10 10 O 1.21597 * 119.99879 * 185.35680 * 9 8 7 11 11 N 1.34773 * 120.00148 * 5.35874 * 9 8 7 12 12 C 1.46507 * 120.00235 * 180.02562 * 11 9 8 13 13 C 1.52991 * 109.47148 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.50272 * 55.00249 * 13 12 11 15 15 C 1.53046 * 109.49769 * 175.06436 * 13 12 11 16 16 C 1.53035 * 109.54169 * 181.31539 * 15 13 12 17 17 C 1.53199 * 109.31272 * 298.63756 * 16 15 13 18 18 N 1.46923 * 108.77838 * 54.63028 * 17 16 15 19 19 C 1.36934 * 120.63231 * 126.38840 * 18 17 16 20 20 H 1.07999 * 120.00832 * 214.51691 * 19 18 17 21 21 C 1.38817 * 119.99619 * 34.51897 * 19 18 17 22 22 N 1.31617 * 120.00125 * 13.17954 * 21 19 18 23 23 Si 1.86803 * 120.00139 * 193.17318 * 21 19 18 24 24 H 1.48500 * 109.46570 * 90.00060 * 23 21 19 25 25 H 1.48493 * 109.47245 * 210.00352 * 23 21 19 26 26 H 1.48504 * 109.46844 * 330.00520 * 23 21 19 27 27 C 1.46937 * 118.76544 * 306.41693 * 18 17 16 28 28 H 1.08999 * 109.46707 * 59.99934 * 1 2 3 29 29 H 1.09000 * 109.46836 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46646 * 299.99978 * 1 2 3 31 31 H 0.96999 * 119.99958 * 180.02562 * 2 1 3 32 32 H 1.08004 * 119.96744 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.78560 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.82443 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.03904 * 179.74658 * 7 6 5 36 36 H 0.96998 * 120.00278 * 359.97438 * 11 9 8 37 37 H 1.09007 * 109.46754 * 300.00145 * 12 11 9 38 38 H 1.08995 * 109.47157 * 59.99773 * 12 11 9 39 39 H 1.08998 * 109.45604 * 301.33470 * 15 13 12 40 40 H 1.09001 * 109.45502 * 61.30670 * 15 13 12 41 41 H 1.09008 * 109.49903 * 58.58259 * 16 15 13 42 42 H 1.09001 * 109.50152 * 178.68391 * 16 15 13 43 43 H 1.08992 * 109.58986 * 174.42103 * 17 16 15 44 44 H 1.09004 * 109.58314 * 294.69978 * 17 16 15 45 45 H 0.96998 * 120.00652 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.56004 * 293.78770 * 27 18 17 47 47 H 1.09000 * 109.61412 * 173.35402 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1594 1.2027 0.0000 4 6 1.4768 2.4033 -0.1530 5 6 2.1690 3.5967 -0.1532 6 6 3.5465 3.6091 -0.0008 7 6 4.2406 2.4290 0.1522 8 6 3.5544 1.2118 0.1535 9 6 4.2911 -0.0549 0.3161 10 8 3.7050 -1.1158 0.2195 11 7 5.6142 -0.0368 0.5720 12 6 6.3464 -1.2955 0.7331 13 6 7.8201 -0.9958 1.0144 14 1 7.8986 -0.3342 1.8771 15 6 8.5610 -2.3032 1.3044 16 6 10.0281 -2.0015 1.6182 17 6 10.6798 -1.3359 0.4019 18 7 9.8879 -0.1565 0.0273 19 6 10.4815 1.0710 -0.0994 20 1 9.9401 1.9639 0.1764 21 6 11.7793 1.1677 -0.5825 22 7 12.3464 0.1288 -1.1582 23 14 12.7210 2.7724 -0.4155 24 1 13.4638 2.7787 0.8704 25 1 13.6798 2.9031 -1.5418 26 1 11.7677 3.9107 -0.4421 27 6 8.4466 -0.3182 -0.2084 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 0.4034 2.4021 -0.2727 33 1 1.6338 4.5272 -0.2720 34 1 4.0786 4.5489 -0.0020 35 1 5.3145 2.4444 0.2664 36 1 6.0819 0.8095 0.6488 37 1 5.9246 -1.8571 1.5667 38 1 6.2629 -1.8839 -0.1806 39 1 8.1013 -2.7991 2.1594 40 1 8.5028 -2.9546 0.4323 41 1 10.0863 -1.3301 2.4750 42 1 10.5497 -2.9307 1.8474 43 1 11.6951 -1.0295 0.6533 44 1 10.7061 -2.0402 -0.4296 45 1 13.2534 0.1962 -1.4954 46 1 8.2884 -0.9383 -1.0907 47 1 7.9885 0.6593 -0.3591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298178075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:01 Heat of formation + Delta-G solvation = -12.368472 kcal Electronic energy + Delta-G solvation = -26524.925855 eV Core-core repulsion = 22899.762548 eV Total energy + Delta-G solvation = -3625.163306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45043 -39.78902 -38.99734 -36.76885 -35.97136 -34.66475 -32.68483 -32.26656 -31.39064 -30.57881 -27.37690 -27.13256 -26.39613 -24.58482 -23.79778 -22.68383 -22.20210 -21.58906 -20.65271 -18.98411 -18.53037 -18.00027 -17.10415 -16.86615 -16.61163 -16.52376 -15.88574 -15.76544 -15.46039 -15.18438 -15.09437 -14.95347 -14.65133 -14.53330 -14.26133 -13.99546 -13.73236 -13.68414 -13.24366 -12.99824 -12.95689 -12.86120 -12.81711 -12.53856 -12.31423 -12.09392 -11.97122 -11.83338 -11.57246 -11.32945 -11.10186 -11.06799 -10.78184 -10.55383 -10.21442 -9.83766 -8.58959 -8.36508 -7.86664 -5.40541 0.01496 0.69463 1.47759 1.48574 1.57576 1.90479 2.21861 2.50766 2.66408 3.01710 3.29059 3.58508 3.81195 3.89715 3.99869 4.00957 4.07077 4.22615 4.36343 4.40160 4.51168 4.53300 4.57188 4.61900 4.65520 4.73672 4.76561 4.87655 4.87906 4.89380 5.00606 5.02393 5.10549 5.18967 5.24091 5.33411 5.38504 5.47140 5.48353 5.55240 5.66632 5.67305 5.76250 5.91948 6.38293 6.42552 6.53728 6.79840 7.16616 7.26006 7.84910 8.40976 9.19115 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.003130 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.977022 B = 8942.135090 C =10464.107590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.745 5.745 3 C 0.255 3.745 4 C -0.218 4.218 5 C -0.038 4.038 6 C -0.197 4.197 7 C -0.042 4.042 8 C -0.253 4.253 9 C 0.566 3.434 10 O -0.587 6.587 11 N -0.714 5.714 12 C 0.138 3.862 13 C -0.101 4.101 14 H 0.077 0.923 15 C -0.096 4.096 16 C -0.130 4.130 17 C 0.177 3.823 18 N -0.608 5.608 19 C -0.266 4.266 20 H 0.068 0.932 21 C -0.046 4.046 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.264 1.264 27 C 0.154 3.846 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.411 0.589 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.409 0.591 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.042 0.958 44 H -0.007 1.007 45 H 0.249 0.751 46 H 0.003 0.997 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.429 3.364 5.269 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.381 5.381 3 C 0.145 3.855 4 C -0.240 4.240 5 C -0.056 4.056 6 C -0.217 4.217 7 C -0.061 4.061 8 C -0.261 4.261 9 C 0.357 3.643 10 O -0.470 6.470 11 N -0.364 5.364 12 C 0.014 3.986 13 C -0.121 4.121 14 H 0.095 0.905 15 C -0.134 4.134 16 C -0.169 4.169 17 C 0.051 3.949 18 N -0.331 5.331 19 C -0.396 4.396 20 H 0.085 0.915 21 C -0.242 4.242 22 N -0.581 5.581 23 Si 0.795 3.205 24 H -0.212 1.212 25 H -0.224 1.224 26 H -0.188 1.188 27 C 0.028 3.972 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.257 0.743 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.246 0.754 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.011 0.989 45 H 0.058 0.942 46 H 0.021 0.979 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.849 2.533 5.130 23.555 hybrid contribution 1.524 0.517 -0.340 1.644 sum -21.326 3.050 4.790 22.069 Atomic orbital electron populations 1.21805 0.78954 1.03718 1.01844 1.45648 1.07338 1.07028 1.78084 1.18119 0.89672 0.88068 0.89682 1.20942 1.01062 0.90576 1.11470 1.21470 0.94091 0.98241 0.91837 1.21144 0.94996 0.98188 1.07350 1.21298 0.99918 0.91354 0.93521 1.19359 0.93075 0.93285 1.20368 1.18424 0.81970 0.88722 0.75161 1.90337 1.67937 1.33556 1.55155 1.45871 1.08158 1.10628 1.71748 1.21293 0.90343 0.85520 1.01398 1.21726 0.92322 0.98571 0.99491 0.90513 1.21328 0.94793 0.95753 1.01553 1.22003 0.96429 0.99949 0.98504 1.20546 0.94543 0.87200 0.92574 1.44217 1.03655 1.05483 1.79745 1.19486 0.97969 0.86059 1.36132 0.91458 1.26005 1.00542 1.00211 0.97482 1.70170 1.14221 1.31883 1.41780 0.85277 0.78409 0.80108 0.76710 1.21156 1.22391 1.18830 1.21012 0.84493 0.97755 0.93934 0.91788 0.89617 0.92010 0.74336 0.83656 0.82705 0.83844 0.85081 0.75394 0.90807 0.92462 0.90088 0.92685 0.92715 0.91169 0.93931 0.98871 0.94156 0.97883 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.01 127.77 1.28 2.43 16 2 N -0.74 -17.16 5.73 -360.20 -2.07 -19.22 16 3 C 0.26 6.13 6.65 38.71 0.26 6.39 16 4 C -0.22 -3.98 9.30 22.38 0.21 -3.78 16 5 C -0.04 -0.59 10.03 22.29 0.22 -0.37 16 6 C -0.20 -3.56 10.02 22.24 0.22 -3.34 16 7 C -0.04 -0.92 9.52 22.52 0.21 -0.71 16 8 C -0.25 -6.60 5.89 -19.98 -0.12 -6.72 16 9 C 0.57 16.81 7.75 86.67 0.67 17.49 16 10 O -0.59 -19.80 13.64 -4.02 -0.05 -19.86 16 11 N -0.71 -19.56 5.28 -466.37 -2.46 -22.02 16 12 C 0.14 3.93 5.07 86.38 0.44 4.36 16 13 C -0.10 -3.17 2.37 -10.72 -0.03 -3.20 16 14 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 15 C -0.10 -2.96 5.17 30.62 0.16 -2.80 16 16 C -0.13 -4.69 6.08 30.67 0.19 -4.51 16 17 C 0.18 8.51 5.25 86.37 0.45 8.96 16 18 N -0.61 -30.09 2.96 -699.06 -2.07 -32.16 16 19 C -0.27 -14.37 9.53 84.04 0.80 -13.57 16 20 H 0.07 3.49 7.86 -2.91 -0.02 3.46 16 21 C -0.05 -2.58 4.96 84.86 0.42 -2.15 16 22 N -0.94 -55.64 11.45 21.65 0.25 -55.39 16 23 Si 0.97 44.28 29.57 68.60 2.03 46.30 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 27 C 0.15 6.20 5.60 86.36 0.48 6.68 16 28 H 0.06 0.75 7.66 -2.39 -0.02 0.74 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.41 11.20 5.36 -94.35 -0.51 10.69 16 32 H 0.15 1.95 6.71 -2.91 -0.02 1.93 16 33 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.13 2.62 6.44 -2.91 -0.02 2.60 16 36 H 0.41 10.20 5.76 -92.71 -0.53 9.66 16 37 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.04 2.31 6.44 -2.39 -0.02 2.30 16 44 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 45 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 46 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.05 2.11 7.14 -2.39 -0.02 2.10 16 Total: -1.00 -68.61 370.52 1.44 -67.17 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.06 Total: 30.01 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.87 Total: 5.17 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -6.35 Total: -128.80 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.86 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.61 1.44 -67.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298178075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.800 kcal (2) G-P(sol) polarization free energy of solvation -68.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds