Wall clock time and date at job start Tue Mar 31 2020 11:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46899 * 111.00045 * 2 1 4 4 C 1.46894 * 111.00079 * 123.95542 * 2 1 3 5 5 C 1.52996 * 109.47520 * 170.00018 * 4 2 1 6 6 C 1.52995 * 109.47299 * 180.02562 * 5 4 2 7 7 N 1.46501 * 109.46937 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00098 * 90.00021 * 7 6 5 9 9 C 1.50699 * 109.46928 * 269.99904 * 8 7 6 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46948 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47174 * 120.00320 * 13 11 9 16 16 H 1.48497 * 109.47378 * 240.00235 * 13 11 9 17 17 C 1.34771 * 120.00308 * 269.99876 * 7 6 5 18 18 O 1.21703 * 119.99728 * 359.97438 * 17 7 6 19 19 C 1.46429 * 120.00498 * 180.02562 * 17 7 6 20 20 C 1.34807 * 120.00408 * 179.97438 * 19 17 7 21 21 C 1.47205 * 120.00142 * 179.97438 * 20 19 17 22 22 C 1.40269 * 120.58469 * 179.97438 * 21 20 19 23 23 C 1.38285 * 118.26428 * 179.97438 * 22 21 20 24 24 C 1.38393 * 119.33829 * 359.97438 * 23 22 21 25 25 N 1.31939 * 121.13515 * 0.02617 * 24 23 22 26 26 C 1.31665 * 121.90432 * 359.67448 * 25 24 23 27 27 H 1.09005 * 109.46729 * 296.04625 * 1 2 3 28 28 H 1.09008 * 109.46911 * 56.04309 * 1 2 3 29 29 H 1.08992 * 109.46899 * 176.04041 * 1 2 3 30 30 H 1.08998 * 109.47389 * 183.95182 * 3 2 1 31 31 H 1.09003 * 109.47137 * 303.95882 * 3 2 1 32 32 H 1.09004 * 109.46805 * 63.95529 * 3 2 1 33 33 H 1.08999 * 109.46921 * 49.99638 * 4 2 1 34 34 H 1.09000 * 109.47115 * 290.00033 * 4 2 1 35 35 H 1.08999 * 109.47334 * 59.99872 * 5 4 2 36 36 H 1.09000 * 109.46938 * 300.00122 * 5 4 2 37 37 H 1.09000 * 109.47411 * 60.00075 * 6 5 4 38 38 H 1.09000 * 109.46990 * 299.99802 * 6 5 4 39 39 H 1.09004 * 109.47073 * 29.99732 * 8 7 6 40 40 H 1.09000 * 109.47212 * 149.99814 * 8 7 6 41 41 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 42 42 H 1.08001 * 119.99533 * 359.97438 * 19 17 7 43 43 H 1.08002 * 119.99533 * 359.97438 * 20 19 17 44 44 H 1.08001 * 120.86541 * 359.95743 * 22 21 20 45 45 H 1.08003 * 120.32859 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.43515 * 179.97438 * 24 23 22 47 47 H 1.08000 * 119.73289 * 180.29146 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9703 6 6 4.0526 -1.7537 2.1548 7 7 5.4974 -1.9355 1.9943 8 6 6.4261 -0.9462 2.5468 9 6 6.6999 0.1170 1.5145 10 1 6.2290 0.0615 0.5441 11 6 7.5508 1.1610 1.8091 12 7 8.1240 1.2289 2.9909 13 14 7.8909 2.4786 0.5293 14 1 7.1298 2.1739 -0.7089 15 1 7.4689 3.8012 1.0563 16 1 9.3437 2.5083 0.2233 17 6 5.9724 -3.0129 1.3386 18 8 5.2009 -3.8350 0.8801 19 6 7.4165 -3.1950 1.1786 20 6 7.8915 -4.2729 0.5231 21 6 9.3432 -4.4556 0.3619 22 6 9.8509 -5.5729 -0.3175 23 6 11.2226 -5.6964 -0.4414 24 6 12.0429 -4.7236 0.1027 25 7 11.5385 -3.6824 0.7369 26 6 10.2400 -3.5151 0.8772 27 1 -0.3633 0.4513 0.9234 28 1 -0.3633 0.5741 -0.8525 29 1 -0.3633 -1.0251 -0.0710 30 1 3.0828 1.3433 -0.0708 31 1 1.5898 1.9164 -0.8524 32 1 1.7045 1.8723 0.9234 33 1 1.5090 -1.7406 1.1755 34 1 1.7976 -0.2248 2.0627 35 1 3.9910 0.0193 0.9323 36 1 3.7024 -1.4966 0.0451 37 1 3.5661 -2.7284 2.1924 38 1 3.8547 -1.2129 3.0802 39 1 5.9847 -0.4881 3.4319 40 1 7.3603 -1.4372 2.8193 41 1 8.7229 1.9632 3.1980 42 1 8.1010 -2.4656 1.5859 43 1 7.2069 -5.0024 0.1163 44 1 9.1877 -6.3173 -0.7327 45 1 11.6495 -6.5432 -0.9583 46 1 13.1145 -4.8187 0.0072 47 1 9.8651 -2.6471 1.3990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299235485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:56 Heat of formation + Delta-G solvation = 18.327776 kcal Electronic energy + Delta-G solvation = -26162.777116 eV Core-core repulsion = 22538.944899 eV Total energy + Delta-G solvation = -3623.832217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.01017 -39.15497 -37.47504 -35.28994 -34.23573 -32.83854 -32.20712 -31.49484 -29.57099 -27.55338 -27.35919 -26.14603 -24.33774 -23.49724 -22.91671 -22.47312 -20.67433 -20.27086 -18.08054 -17.34802 -16.68222 -16.56544 -15.98755 -15.52842 -15.33185 -15.01100 -14.78887 -14.46073 -14.43024 -14.00807 -13.84836 -13.77605 -13.41891 -13.04605 -12.89600 -12.40937 -12.30128 -12.13261 -11.86074 -11.68574 -11.64652 -11.48762 -11.37806 -11.28154 -11.01461 -10.91677 -10.70628 -10.56447 -10.30122 -9.90906 -9.66342 -9.59792 -9.36933 -9.18429 -8.57895 -8.23220 -8.22524 -7.72053 -6.20565 -4.27532 0.64939 1.30133 2.24890 3.21056 3.30761 3.34363 3.74725 3.88885 4.13036 4.16336 4.32989 4.51439 4.81891 4.89875 4.95553 5.04971 5.12998 5.18758 5.27686 5.36260 5.44220 5.46618 5.52892 5.66574 5.71819 5.76292 5.83765 5.85470 5.88964 5.91305 6.00794 6.06402 6.10815 6.16964 6.21156 6.58199 6.60554 6.67130 6.71613 6.83530 6.90031 7.13761 7.16254 7.20991 7.51493 7.74895 8.02357 8.04978 8.27796 8.77352 8.96384 9.40685 10.86052 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003774 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.346297 B = 7417.159905 C = 9201.243825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.020 3.980 4 C 0.059 3.941 5 C -0.130 4.130 6 C 0.126 3.874 7 N -0.586 5.586 8 C 0.234 3.766 9 C -0.534 4.534 10 H 0.064 0.936 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.891 3.109 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.281 1.281 17 C 0.544 3.456 18 O -0.575 6.575 19 C -0.158 4.158 20 C -0.065 4.065 21 C -0.105 4.105 22 C -0.065 4.065 23 C -0.177 4.177 24 C 0.092 3.908 25 N -0.482 5.482 26 C 0.116 3.884 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.143 0.857 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.133 0.867 46 H 0.153 0.847 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 -7.970 -3.694 9.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.128 4.128 4 C -0.069 4.069 5 C -0.169 4.169 6 C 0.002 3.998 7 N -0.315 5.315 8 C 0.115 3.885 9 C -0.573 4.573 10 H 0.082 0.918 11 C -0.137 4.137 12 N -0.529 5.529 13 Si 0.718 3.282 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.207 1.207 17 C 0.334 3.666 18 O -0.458 6.458 19 C -0.178 4.178 20 C -0.086 4.086 21 C -0.107 4.107 22 C -0.091 4.091 23 C -0.197 4.197 24 C -0.065 4.065 25 N -0.189 5.189 26 C -0.042 4.042 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.161 0.839 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.151 0.849 46 H 0.170 0.830 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.511 -7.835 -3.853 9.085 hybrid contribution -0.522 0.821 -0.265 1.008 sum -3.033 -7.015 -4.119 8.681 Atomic orbital electron populations 1.22362 0.87944 1.01908 1.00072 1.61959 1.07212 1.14208 1.43772 1.22456 1.02013 0.88394 0.99903 1.22093 0.96432 0.97579 0.90784 1.21967 0.93134 1.02318 0.99456 1.21191 0.81184 0.99747 0.97653 1.48109 1.06980 1.22819 1.53557 1.19534 0.88181 0.86228 0.94586 1.21537 1.27666 1.07886 1.00213 0.91790 1.24917 0.95465 0.97866 0.95418 1.69916 1.30198 1.32219 1.20519 0.86539 0.78365 0.81502 0.81761 1.19558 1.20899 1.20731 1.18188 0.88598 0.81386 0.78419 1.90708 1.59401 1.44910 1.50799 1.23414 0.95917 0.98374 1.00088 1.22041 0.91792 0.97728 0.97048 1.20104 0.94572 0.96181 0.99873 1.21770 0.95477 0.96389 0.95482 1.22035 0.94232 1.01054 1.02382 1.22857 1.00449 0.89734 0.93432 1.67687 1.14979 1.21770 1.14502 1.23373 0.87939 0.97838 0.95029 0.95982 0.91717 0.91581 0.90285 0.91914 0.95727 0.91134 0.94958 0.90074 0.91270 0.91171 0.91239 0.94512 0.94294 0.92524 0.83929 0.84977 0.84604 0.84866 0.82996 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.57 60.07 0.57 0.87 16 2 N -0.55 -7.88 5.02 -251.26 -1.26 -9.14 16 3 C 0.02 0.28 9.32 60.06 0.56 0.84 16 4 C 0.06 0.87 4.96 -3.83 -0.02 0.85 16 5 C -0.13 -2.28 5.46 -26.74 -0.15 -2.42 16 6 C 0.13 2.27 5.45 -4.04 -0.02 2.24 16 7 N -0.59 -12.00 2.46 -176.70 -0.43 -12.43 16 8 C 0.23 5.32 4.92 -5.19 -0.03 5.30 16 9 C -0.53 -13.28 8.92 -34.44 -0.31 -13.59 16 10 H 0.06 1.64 7.42 -52.48 -0.39 1.25 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -23.84 13.29 55.43 0.74 -23.11 16 13 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C 0.54 11.22 7.61 -12.97 -0.10 11.12 16 18 O -0.57 -12.71 15.81 5.19 0.08 -12.63 16 19 C -0.16 -2.91 8.62 -37.50 -0.32 -3.23 16 20 C -0.07 -1.05 9.48 -37.16 -0.35 -1.40 16 21 C -0.11 -1.54 5.88 -104.91 -0.62 -2.16 16 22 C -0.07 -0.78 9.95 -38.80 -0.39 -1.17 16 23 C -0.18 -1.88 10.09 -39.51 -0.40 -2.28 16 24 C 0.09 1.12 11.17 -17.45 -0.19 0.93 16 25 N -0.48 -7.51 10.34 -12.83 -0.13 -7.64 16 26 C 0.12 1.84 10.59 -17.04 -0.18 1.66 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.66 8.12 -51.92 -0.42 0.24 16 29 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.08 1.23 6.47 -51.93 -0.34 0.90 16 31 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 34 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.08 1.57 5.67 -51.93 -0.29 1.28 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.07 1.23 7.42 -51.93 -0.39 0.85 16 38 H 0.07 1.16 7.89 -51.93 -0.41 0.75 16 39 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 40 H 0.04 0.91 6.09 -51.93 -0.32 0.59 16 41 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.14 2.71 4.25 -52.49 -0.22 2.48 16 43 H 0.13 2.04 7.52 -52.49 -0.39 1.65 16 44 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 46 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 47 H 0.17 2.74 6.19 -52.49 -0.32 2.42 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -29.46 389.50 -9.46 -38.91 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.26 Total: 5.71 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.03 Total: -0.83 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -1.09 Total: -52.32 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.46 -9.46 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299235485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.242 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds