Wall clock time and date at job start Tue Mar 31 2020 11:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46899 * 111.00045 * 2 1 4 4 C 1.46894 * 111.00079 * 123.95542 * 2 1 3 5 5 C 1.52996 * 109.47520 * 170.00018 * 4 2 1 6 6 C 1.52995 * 109.47299 * 180.02562 * 5 4 2 7 7 N 1.46501 * 109.46937 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00098 * 90.00021 * 7 6 5 9 9 C 1.50699 * 109.46928 * 269.99904 * 8 7 6 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46948 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47174 * 120.00320 * 13 11 9 16 16 H 1.48497 * 109.47378 * 240.00235 * 13 11 9 17 17 C 1.34771 * 120.00308 * 269.99876 * 7 6 5 18 18 O 1.21703 * 119.99728 * 359.97438 * 17 7 6 19 19 C 1.46429 * 120.00498 * 180.02562 * 17 7 6 20 20 C 1.34807 * 120.00408 * 179.97438 * 19 17 7 21 21 C 1.47205 * 120.00142 * 179.97438 * 20 19 17 22 22 C 1.40269 * 120.58469 * 179.97438 * 21 20 19 23 23 C 1.38285 * 118.26428 * 179.97438 * 22 21 20 24 24 C 1.38393 * 119.33829 * 359.97438 * 23 22 21 25 25 N 1.31939 * 121.13515 * 0.02617 * 24 23 22 26 26 C 1.31665 * 121.90432 * 359.67448 * 25 24 23 27 27 H 1.09005 * 109.46729 * 296.04625 * 1 2 3 28 28 H 1.09008 * 109.46911 * 56.04309 * 1 2 3 29 29 H 1.08992 * 109.46899 * 176.04041 * 1 2 3 30 30 H 1.08998 * 109.47389 * 183.95182 * 3 2 1 31 31 H 1.09003 * 109.47137 * 303.95882 * 3 2 1 32 32 H 1.09004 * 109.46805 * 63.95529 * 3 2 1 33 33 H 1.08999 * 109.46921 * 49.99638 * 4 2 1 34 34 H 1.09000 * 109.47115 * 290.00033 * 4 2 1 35 35 H 1.08999 * 109.47334 * 59.99872 * 5 4 2 36 36 H 1.09000 * 109.46938 * 300.00122 * 5 4 2 37 37 H 1.09000 * 109.47411 * 60.00075 * 6 5 4 38 38 H 1.09000 * 109.46990 * 299.99802 * 6 5 4 39 39 H 1.09004 * 109.47073 * 29.99732 * 8 7 6 40 40 H 1.09000 * 109.47212 * 149.99814 * 8 7 6 41 41 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 42 42 H 1.08001 * 119.99533 * 359.97438 * 19 17 7 43 43 H 1.08002 * 119.99533 * 359.97438 * 20 19 17 44 44 H 1.08001 * 120.86541 * 359.95743 * 22 21 20 45 45 H 1.08003 * 120.32859 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.43515 * 179.97438 * 24 23 22 47 47 H 1.08000 * 119.73289 * 180.29146 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9703 6 6 4.0526 -1.7537 2.1548 7 7 5.4974 -1.9355 1.9943 8 6 6.4261 -0.9462 2.5468 9 6 6.6999 0.1170 1.5145 10 1 6.2290 0.0615 0.5441 11 6 7.5508 1.1610 1.8091 12 7 8.1240 1.2289 2.9909 13 14 7.8909 2.4786 0.5293 14 1 7.1298 2.1739 -0.7089 15 1 7.4689 3.8012 1.0563 16 1 9.3437 2.5083 0.2233 17 6 5.9724 -3.0129 1.3386 18 8 5.2009 -3.8350 0.8801 19 6 7.4165 -3.1950 1.1786 20 6 7.8915 -4.2729 0.5231 21 6 9.3432 -4.4556 0.3619 22 6 9.8509 -5.5729 -0.3175 23 6 11.2226 -5.6964 -0.4414 24 6 12.0429 -4.7236 0.1027 25 7 11.5385 -3.6824 0.7369 26 6 10.2400 -3.5151 0.8772 27 1 -0.3633 0.4513 0.9234 28 1 -0.3633 0.5741 -0.8525 29 1 -0.3633 -1.0251 -0.0710 30 1 3.0828 1.3433 -0.0708 31 1 1.5898 1.9164 -0.8524 32 1 1.7045 1.8723 0.9234 33 1 1.5090 -1.7406 1.1755 34 1 1.7976 -0.2248 2.0627 35 1 3.9910 0.0193 0.9323 36 1 3.7024 -1.4966 0.0451 37 1 3.5661 -2.7284 2.1924 38 1 3.8547 -1.2129 3.0802 39 1 5.9847 -0.4881 3.4319 40 1 7.3603 -1.4372 2.8193 41 1 8.7229 1.9632 3.1980 42 1 8.1010 -2.4656 1.5859 43 1 7.2069 -5.0024 0.1163 44 1 9.1877 -6.3173 -0.7327 45 1 11.6495 -6.5432 -0.9583 46 1 13.1145 -4.8187 0.0072 47 1 9.8651 -2.6471 1.3990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299235485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:55 Heat of formation + Delta-G solvation = 1.071502 kcal Electronic energy + Delta-G solvation = -26163.525404 eV Core-core repulsion = 22538.944899 eV Total energy + Delta-G solvation = -3624.580505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15585 -40.67243 -38.64783 -36.91091 -35.54677 -34.67812 -33.31345 -32.90046 -30.77117 -29.28218 -28.48628 -27.48592 -25.61160 -24.84651 -24.45380 -23.68923 -21.88970 -21.60647 -19.59764 -18.65098 -18.57650 -17.83182 -17.40835 -16.80348 -16.52816 -16.41227 -16.07762 -15.98401 -15.70261 -15.40368 -15.04752 -14.91181 -14.67240 -14.46683 -14.22941 -13.96727 -13.66268 -13.41908 -13.24477 -13.08767 -12.95236 -12.82808 -12.71564 -12.63346 -12.54500 -12.38037 -12.28414 -12.02536 -11.79121 -11.62808 -11.38272 -10.88743 -10.59599 -10.55706 -10.39983 -9.61222 -9.31693 -9.28601 -8.20082 -6.32363 -0.53950 0.30534 0.97803 1.36766 1.41517 1.50763 2.21865 2.42978 2.44602 2.94649 3.05481 3.10931 3.43695 3.62907 3.84390 3.95512 3.96807 4.06968 4.12404 4.23004 4.28502 4.30962 4.44500 4.48361 4.51901 4.60463 4.62101 4.67123 4.75567 4.77583 4.83581 4.90179 4.99599 5.01842 5.02274 5.10668 5.17014 5.20049 5.34526 5.39810 5.46977 5.68849 5.76226 5.86361 6.05105 6.06468 6.14679 6.54494 6.82094 7.00003 7.28654 7.41132 8.85652 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003774 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.346297 B = 7417.159905 C = 9201.243825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.567 5.567 3 C 0.023 3.977 4 C 0.067 3.933 5 C -0.115 4.115 6 C 0.123 3.877 7 N -0.592 5.592 8 C 0.250 3.750 9 C -0.532 4.532 10 H 0.051 0.949 11 C 0.026 3.974 12 N -0.918 5.918 13 Si 0.945 3.055 14 H -0.272 1.272 15 H -0.276 1.276 16 H -0.281 1.281 17 C 0.542 3.458 18 O -0.595 6.595 19 C -0.200 4.200 20 C -0.024 4.024 21 C -0.129 4.129 22 C -0.055 4.055 23 C -0.163 4.163 24 C 0.091 3.909 25 N -0.516 5.516 26 C 0.097 3.903 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.024 0.976 40 H 0.030 0.970 41 H 0.267 0.733 42 H 0.129 0.871 43 H 0.143 0.857 44 H 0.168 0.832 45 H 0.179 0.821 46 H 0.185 0.815 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.777 -9.583 -5.229 11.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.291 5.291 3 C -0.125 4.125 4 C -0.061 4.061 5 C -0.154 4.154 6 C 0.000 4.000 7 N -0.320 5.320 8 C 0.130 3.870 9 C -0.571 4.571 10 H 0.070 0.930 11 C -0.174 4.174 12 N -0.558 5.558 13 Si 0.771 3.229 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.207 1.207 17 C 0.334 3.666 18 O -0.480 6.480 19 C -0.220 4.220 20 C -0.045 4.045 21 C -0.131 4.131 22 C -0.081 4.081 23 C -0.182 4.182 24 C -0.065 4.065 25 N -0.225 5.225 26 C -0.059 4.059 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.147 0.853 43 H 0.161 0.839 44 H 0.185 0.815 45 H 0.197 0.803 46 H 0.202 0.798 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.349 -9.440 -5.386 11.120 hybrid contribution -0.438 1.162 0.132 1.249 sum -2.787 -8.278 -5.253 10.193 Atomic orbital electron populations 1.22423 0.85767 1.02865 1.01096 1.61937 1.09252 1.14287 1.43636 1.22408 1.00489 0.88654 1.00966 1.21978 0.94102 0.98545 0.91476 1.21764 0.95407 1.00311 0.97923 1.21353 0.79896 1.00358 0.98405 1.48096 1.07742 1.22470 1.53664 1.19177 0.88206 0.86059 0.93587 1.21626 1.27164 1.08332 0.99986 0.93025 1.25523 0.95435 0.99600 0.96882 1.69995 1.30939 1.32961 1.21861 0.85701 0.77961 0.79553 0.79716 1.19670 1.20194 1.20668 1.18485 0.89395 0.80942 0.77774 1.90671 1.60057 1.45410 1.51827 1.23152 0.94503 1.00307 1.04055 1.22223 0.92910 0.95901 0.93444 1.20067 0.93342 0.97723 1.02010 1.22202 0.96847 0.95389 0.93653 1.22508 0.93353 1.01460 1.00850 1.23550 1.02400 0.88787 0.91769 1.67659 1.14675 1.23913 1.16230 1.23141 0.88798 0.97980 0.96028 0.95099 0.90447 0.90751 0.92872 0.90215 0.95169 0.89940 0.94052 0.92408 0.93857 0.90488 0.90051 0.95778 0.95172 0.92417 0.85322 0.83945 0.81465 0.80324 0.79759 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.57 127.69 1.22 1.77 16 2 N -0.57 -15.84 5.02 -948.84 -4.76 -20.60 16 3 C 0.02 0.63 9.32 127.69 1.19 1.82 16 4 C 0.07 1.94 4.96 86.30 0.43 2.37 16 5 C -0.12 -4.17 5.46 30.59 0.17 -4.00 16 6 C 0.12 4.54 5.45 86.38 0.47 5.01 16 7 N -0.59 -25.36 2.46 -831.16 -2.04 -27.41 16 8 C 0.25 11.99 4.92 85.63 0.42 12.41 16 9 C -0.53 -27.61 8.92 25.60 0.23 -27.38 16 10 H 0.05 2.77 7.42 -2.91 -0.02 2.75 16 11 C 0.03 1.37 5.46 84.65 0.46 1.83 16 12 N -0.92 -50.61 13.29 21.45 0.28 -50.33 16 13 Si 0.94 42.59 29.54 68.60 2.03 44.62 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 C 0.54 23.30 7.61 86.38 0.66 23.96 16 18 O -0.59 -26.83 15.81 -4.36 -0.07 -26.90 16 19 C -0.20 -7.76 8.62 23.62 0.20 -7.56 16 20 C -0.02 -0.78 9.48 23.84 0.23 -0.55 16 21 C -0.13 -3.71 5.88 -20.05 -0.12 -3.83 16 22 C -0.06 -1.14 9.95 22.78 0.23 -0.91 16 23 C -0.16 -2.75 10.09 22.32 0.23 -2.52 16 24 C 0.09 1.97 11.17 84.71 0.95 2.92 16 25 N -0.52 -15.90 10.34 -194.52 -2.01 -17.92 16 26 C 0.10 3.19 10.59 85.09 0.90 4.10 16 27 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.08 1.41 8.12 -2.38 -0.02 1.39 16 29 H 0.07 1.42 8.12 -2.39 -0.02 1.40 16 30 H 0.05 1.71 6.47 -2.39 -0.02 1.70 16 31 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 32 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.08 2.18 8.06 -2.39 -0.02 2.16 16 34 H 0.04 1.12 8.12 -2.39 -0.02 1.10 16 35 H 0.06 2.35 5.67 -2.39 -0.01 2.34 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 2.73 7.42 -2.39 -0.02 2.72 16 38 H 0.08 2.77 7.89 -2.39 -0.02 2.75 16 39 H 0.02 1.21 7.89 -2.38 -0.02 1.19 16 40 H 0.03 1.51 6.09 -2.39 -0.01 1.49 16 41 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.13 5.34 4.25 -2.91 -0.01 5.33 16 43 H 0.14 4.26 7.52 -2.91 -0.02 4.24 16 44 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 46 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 47 H 0.14 5.19 6.19 -2.91 -0.02 5.17 16 Total: -1.00 -65.86 389.50 2.24 -63.62 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.95 Total: 25.49 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 7.86 Total: 9.42 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -8.53 Total: -116.25 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.07 Total: -26.90 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -65.86 2.24 -63.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299235485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.695 kcal (2) G-P(sol) polarization free energy of solvation -65.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds