Wall clock time and date at job start Tue Mar 31 2020 11:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37344 * 119.99982 * 2 1 4 4 O 1.35089 * 119.99903 * 180.02562 * 3 2 1 5 5 N 1.30098 * 119.99739 * 0.02562 * 3 2 1 6 6 C 1.46499 * 119.99660 * 185.25542 * 5 3 2 7 7 C 1.50707 * 109.46931 * 115.33234 * 6 5 3 8 8 H 1.08000 * 120.00425 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99664 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00377 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99627 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47411 * 59.99831 * 11 9 7 13 13 H 1.48506 * 109.46746 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47184 * 299.99464 * 11 9 7 15 15 C 1.46504 * 119.99890 * 180.02562 * 2 1 3 16 16 H 1.09001 * 109.49635 * 180.02562 * 15 2 1 17 17 C 1.53116 * 109.50650 * 59.99729 * 15 2 1 18 18 C 1.53116 * 109.16038 * 182.36717 * 17 15 2 19 19 C 1.53035 * 109.28238 * 57.64968 * 18 17 15 20 20 N 1.46854 * 109.52418 * 300.82542 * 19 18 17 21 21 C 1.39674 * 110.99838 * 185.83188 * 20 19 18 22 22 C 1.38911 * 120.07242 * 56.05107 * 21 20 19 23 23 C 1.38106 * 119.92861 * 179.97438 * 22 21 20 24 24 C 1.38286 * 120.06729 * 0.26999 * 23 22 21 25 25 C 1.38286 * 120.15072 * 359.44852 * 24 23 22 26 26 C 1.38095 * 120.07455 * 0.55629 * 25 24 23 27 27 C 1.46847 * 111.19695 * 61.73682 * 20 19 18 28 28 H 1.09001 * 109.46624 * 269.99557 * 1 2 3 29 29 H 1.09000 * 109.47259 * 29.99991 * 1 2 3 30 30 H 1.09003 * 109.46993 * 149.99389 * 1 2 3 31 31 H 0.96693 * 114.00707 * 85.01839 * 4 3 2 32 32 H 1.08993 * 109.46948 * 235.32722 * 6 5 3 33 33 H 1.08998 * 109.47597 * 355.33518 * 6 5 3 34 34 H 0.97001 * 120.00211 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.52422 * 62.45611 * 17 15 2 36 36 H 1.08998 * 109.57362 * 302.30138 * 17 15 2 37 37 H 1.09004 * 109.50312 * 297.71424 * 18 17 15 38 38 H 1.08998 * 109.50542 * 177.59441 * 18 17 15 39 39 H 1.08993 * 109.46946 * 180.80596 * 19 18 17 40 40 H 1.09007 * 109.44852 * 60.83198 * 19 18 17 41 41 H 1.08003 * 120.03873 * 359.94929 * 22 21 20 42 42 H 1.08001 * 119.96375 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.92214 * 179.70917 * 24 23 22 44 44 H 1.08006 * 119.96144 * 180.25638 * 25 24 23 45 45 H 1.08004 * 120.03896 * 179.74877 * 26 25 24 46 46 H 1.09003 * 109.46282 * 58.27433 * 27 20 19 47 47 H 1.09001 * 109.45943 * 178.24452 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1518 1.1894 0.0000 4 8 3.5026 1.1894 -0.0005 5 7 1.5012 2.3161 0.0005 6 6 2.2291 3.5822 -0.1157 7 6 1.8509 4.2623 -1.4063 8 1 1.1398 3.7978 -2.0734 9 6 2.4134 5.4772 -1.7358 10 7 3.2797 6.0427 -0.9237 11 14 1.9441 6.3207 -3.3352 12 1 0.4834 6.5875 -3.3440 13 1 2.6820 7.6040 -3.4530 14 1 2.2936 5.4413 -4.4797 15 6 2.1975 -1.2688 -0.0006 16 1 3.2693 -1.0701 0.0000 17 6 1.8282 -2.0718 -1.2508 18 6 2.5521 -3.4205 -1.2139 19 6 2.1700 -4.1643 0.0678 20 7 2.5444 -3.3553 1.2349 21 6 2.3302 -4.0599 2.4217 22 6 2.9288 -5.2986 2.6136 23 6 2.7154 -5.9925 3.7885 24 6 1.9023 -5.4577 4.7710 25 6 1.3096 -4.2222 4.5856 26 6 1.5187 -3.5232 3.4132 27 6 1.8256 -2.0748 1.2460 28 1 -0.3632 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 3.8957 1.1129 -0.8806 32 1 1.9717 4.2275 0.7241 33 1 3.3014 3.3868 -0.1087 34 1 3.6752 6.8976 -1.1554 35 1 2.1308 -1.5201 -2.1407 36 1 0.7510 -2.2372 -1.2736 37 1 3.6295 -3.2558 -1.2315 38 1 2.2600 -4.0142 -2.0800 39 1 2.6949 -5.1188 0.1041 40 1 1.0944 -4.3407 0.0781 41 1 3.5600 -5.7189 1.8446 42 1 3.1808 -6.9554 3.9384 43 1 1.7333 -6.0044 5.6869 44 1 0.6784 -3.8056 5.3568 45 1 1.0522 -2.5601 3.2673 46 1 0.7517 -2.2612 1.2509 47 1 2.1005 -1.5118 2.1379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331169316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:20 Heat of formation + Delta-G solvation = 28.147658 kcal Electronic energy + Delta-G solvation = -26587.786696 eV Core-core repulsion = 22964.380301 eV Total energy + Delta-G solvation = -3623.406395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69719 -38.98447 -37.76427 -35.46448 -33.76279 -33.29818 -31.97514 -31.30713 -29.82985 -29.16755 -27.18524 -26.17034 -24.86667 -23.84943 -22.45039 -21.77755 -21.25887 -19.71970 -19.50773 -18.12067 -17.38717 -16.16884 -16.05106 -15.67350 -15.44808 -15.36489 -15.06644 -14.74252 -14.45956 -14.08636 -14.00207 -13.75563 -13.70647 -13.47942 -13.01781 -12.81153 -12.56517 -12.34293 -12.05980 -11.79059 -11.69743 -11.63788 -11.24492 -11.11656 -10.99828 -10.85683 -10.82066 -10.65798 -10.62382 -10.08454 -9.99042 -9.88033 -9.20746 -9.14414 -8.59882 -8.08873 -8.03595 -7.16726 -5.98410 -4.02645 1.17875 1.19953 3.00900 3.22489 3.33168 3.37314 3.41445 3.51770 3.79119 4.45867 4.50090 4.57132 4.67767 4.71766 4.76130 4.89517 4.92506 4.97423 5.07030 5.21006 5.26527 5.29905 5.34116 5.37160 5.39925 5.51932 5.58746 5.60178 5.64549 5.77490 5.83357 5.88130 5.96951 6.04264 6.10042 6.20995 6.26401 6.35608 6.41060 6.56254 6.76566 7.08946 7.22460 7.47999 7.64126 7.73594 7.98724 8.22802 8.44155 8.99443 9.33320 9.64136 11.10073 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.002591 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.623069 B =10804.872221 C =11285.184181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.612 5.612 3 C 0.505 3.495 4 O -0.525 6.525 5 N -0.562 5.562 6 C 0.194 3.806 7 C -0.508 4.508 8 H 0.057 0.943 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.900 3.100 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.160 3.840 16 H 0.100 0.900 17 C -0.135 4.135 18 C -0.116 4.116 19 C 0.058 3.942 20 N -0.487 5.487 21 C 0.117 3.883 22 C -0.143 4.143 23 C -0.097 4.097 24 C -0.151 4.151 25 C -0.093 4.093 26 C -0.171 4.171 27 C 0.045 3.955 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.389 0.611 32 H 0.035 0.965 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.128 0.872 46 H 0.048 0.952 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 -27.038 4.702 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.344 5.344 3 C 0.190 3.810 4 O -0.326 6.326 5 N -0.300 5.300 6 C 0.066 3.934 7 C -0.547 4.547 8 H 0.076 0.924 9 C -0.146 4.146 10 N -0.536 5.536 11 Si 0.727 3.273 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.204 1.204 15 C 0.054 3.946 16 H 0.118 0.882 17 C -0.174 4.174 18 C -0.154 4.154 19 C -0.067 4.067 20 N -0.201 5.201 21 C 0.019 3.981 22 C -0.163 4.163 23 C -0.116 4.116 24 C -0.170 4.170 25 C -0.112 4.112 26 C -0.192 4.192 27 C -0.083 4.083 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.246 0.754 32 H 0.053 0.947 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.145 0.855 46 H 0.066 0.934 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.604 -26.273 5.246 26.918 hybrid contribution 0.053 0.400 -1.209 1.275 sum -2.551 -25.873 4.038 26.310 Atomic orbital electron populations 1.21368 0.78548 1.02354 1.00642 1.45901 1.05358 1.01502 1.81641 1.20244 0.78211 0.86708 0.95788 1.84824 1.18546 1.94622 1.34633 1.72319 1.36917 0.99015 1.21766 1.19504 0.92654 0.84010 0.97191 1.21113 1.25041 1.04426 1.04138 0.92429 1.24998 0.95170 0.97104 0.97300 1.69960 1.29214 1.17685 1.36693 0.86540 0.78645 0.78615 0.83455 1.20166 1.21245 1.20364 1.20734 0.98063 0.83093 0.92693 0.88237 1.22049 1.00834 0.95778 0.98714 1.21594 1.01698 0.95866 0.96245 1.22269 0.99188 0.96273 0.88983 1.58921 1.55411 1.04470 1.01342 1.18971 0.94499 0.92981 0.91609 1.20777 1.02008 0.94720 0.98806 1.20996 0.97802 0.99480 0.93317 1.21061 0.99853 0.96527 0.99597 1.21028 0.98761 0.94626 0.96757 1.21404 1.00289 1.01886 0.95586 1.22660 0.96294 0.89085 1.00299 0.94292 0.89842 0.92782 0.75440 0.94710 0.97088 0.92813 0.90864 0.91588 0.90596 0.90701 0.89996 0.93848 0.85840 0.86065 0.86354 0.86109 0.85464 0.93357 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.58 9.48 59.85 0.57 2.15 16 2 N -0.61 -9.41 2.84 -176.44 -0.50 -9.91 16 3 C 0.51 10.10 8.32 -88.56 -0.74 9.36 16 4 O -0.53 -10.02 10.58 -16.97 -0.18 -10.20 16 5 N -0.56 -13.57 9.28 -63.71 -0.59 -14.17 16 6 C 0.19 5.46 6.09 -5.19 -0.03 5.43 16 7 C -0.51 -14.99 9.39 -34.44 -0.32 -15.31 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 11 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.16 1.95 2.72 -67.85 -0.18 1.77 16 16 H 0.10 1.33 6.86 -51.93 -0.36 0.97 16 17 C -0.13 -1.32 5.31 -26.61 -0.14 -1.47 16 18 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 19 C 0.06 0.49 5.26 -3.83 -0.02 0.47 16 20 N -0.49 -5.10 4.70 -171.15 -0.80 -5.90 16 21 C 0.12 1.25 5.64 -83.79 -0.47 0.78 16 22 C -0.14 -1.34 9.16 -39.38 -0.36 -1.70 16 23 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16 24 C -0.15 -1.29 10.04 -39.55 -0.40 -1.69 16 25 C -0.09 -0.87 10.04 -39.62 -0.40 -1.27 16 26 C -0.17 -1.81 8.82 -39.39 -0.35 -2.16 16 27 C 0.04 0.51 3.44 -3.84 -0.01 0.50 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.37 7.36 -51.93 -0.38 0.98 16 30 H 0.05 0.59 6.39 -51.93 -0.33 0.26 16 31 H 0.39 6.01 9.06 45.56 0.41 6.42 16 32 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.01 0.32 6.74 -51.93 -0.35 -0.02 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.63 6.58 -51.93 -0.34 0.29 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.59 6.72 -51.93 -0.35 0.24 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.12 0.98 7.17 -52.48 -0.38 0.61 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 45 H 0.13 1.33 5.81 -52.48 -0.30 1.03 16 46 H 0.05 0.53 7.23 -51.93 -0.38 0.15 16 47 H 0.09 1.13 6.99 -51.93 -0.36 0.76 16 LS Contribution 372.89 15.07 5.62 5.62 Total: -1.00 -33.73 372.89 -10.72 -44.45 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.47 Total: 3.57 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -3.52 Total: -3.91 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -1.16 Total: -56.57 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.18 Total: -10.20 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.73 -10.72 -44.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331169316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.598 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds