Wall clock time and date at job start Tue Mar 31 2020 11:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37344 * 119.99982 * 2 1 4 4 O 1.35089 * 119.99903 * 180.02562 * 3 2 1 5 5 N 1.30098 * 119.99739 * 0.02562 * 3 2 1 6 6 C 1.46499 * 119.99660 * 185.25542 * 5 3 2 7 7 C 1.50707 * 109.46931 * 115.33234 * 6 5 3 8 8 H 1.08000 * 120.00425 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99664 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00377 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99627 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47411 * 59.99831 * 11 9 7 13 13 H 1.48506 * 109.46746 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47184 * 299.99464 * 11 9 7 15 15 C 1.46504 * 119.99890 * 180.02562 * 2 1 3 16 16 H 1.09001 * 109.49635 * 180.02562 * 15 2 1 17 17 C 1.53116 * 109.50650 * 59.99729 * 15 2 1 18 18 C 1.53116 * 109.16038 * 182.36717 * 17 15 2 19 19 C 1.53035 * 109.28238 * 57.64968 * 18 17 15 20 20 N 1.46854 * 109.52418 * 300.82542 * 19 18 17 21 21 C 1.39674 * 110.99838 * 185.83188 * 20 19 18 22 22 C 1.38911 * 120.07242 * 56.05107 * 21 20 19 23 23 C 1.38106 * 119.92861 * 179.97438 * 22 21 20 24 24 C 1.38286 * 120.06729 * 0.26999 * 23 22 21 25 25 C 1.38286 * 120.15072 * 359.44852 * 24 23 22 26 26 C 1.38095 * 120.07455 * 0.55629 * 25 24 23 27 27 C 1.46847 * 111.19695 * 61.73682 * 20 19 18 28 28 H 1.09001 * 109.46624 * 269.99557 * 1 2 3 29 29 H 1.09000 * 109.47259 * 29.99991 * 1 2 3 30 30 H 1.09003 * 109.46993 * 149.99389 * 1 2 3 31 31 H 0.96693 * 114.00707 * 85.01839 * 4 3 2 32 32 H 1.08993 * 109.46948 * 235.32722 * 6 5 3 33 33 H 1.08998 * 109.47597 * 355.33518 * 6 5 3 34 34 H 0.97001 * 120.00211 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.52422 * 62.45611 * 17 15 2 36 36 H 1.08998 * 109.57362 * 302.30138 * 17 15 2 37 37 H 1.09004 * 109.50312 * 297.71424 * 18 17 15 38 38 H 1.08998 * 109.50542 * 177.59441 * 18 17 15 39 39 H 1.08993 * 109.46946 * 180.80596 * 19 18 17 40 40 H 1.09007 * 109.44852 * 60.83198 * 19 18 17 41 41 H 1.08003 * 120.03873 * 359.94929 * 22 21 20 42 42 H 1.08001 * 119.96375 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.92214 * 179.70917 * 24 23 22 44 44 H 1.08006 * 119.96144 * 180.25638 * 25 24 23 45 45 H 1.08004 * 120.03896 * 179.74877 * 26 25 24 46 46 H 1.09003 * 109.46282 * 58.27433 * 27 20 19 47 47 H 1.09001 * 109.45943 * 178.24452 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1518 1.1894 0.0000 4 8 3.5026 1.1894 -0.0005 5 7 1.5012 2.3161 0.0005 6 6 2.2291 3.5822 -0.1157 7 6 1.8509 4.2623 -1.4063 8 1 1.1398 3.7978 -2.0734 9 6 2.4134 5.4772 -1.7358 10 7 3.2797 6.0427 -0.9237 11 14 1.9441 6.3207 -3.3352 12 1 0.4834 6.5875 -3.3440 13 1 2.6820 7.6040 -3.4530 14 1 2.2936 5.4413 -4.4797 15 6 2.1975 -1.2688 -0.0006 16 1 3.2693 -1.0701 0.0000 17 6 1.8282 -2.0718 -1.2508 18 6 2.5521 -3.4205 -1.2139 19 6 2.1700 -4.1643 0.0678 20 7 2.5444 -3.3553 1.2349 21 6 2.3302 -4.0599 2.4217 22 6 2.9288 -5.2986 2.6136 23 6 2.7154 -5.9925 3.7885 24 6 1.9023 -5.4577 4.7710 25 6 1.3096 -4.2222 4.5856 26 6 1.5187 -3.5232 3.4132 27 6 1.8256 -2.0748 1.2460 28 1 -0.3632 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 3.8957 1.1129 -0.8806 32 1 1.9717 4.2275 0.7241 33 1 3.3014 3.3868 -0.1087 34 1 3.6752 6.8976 -1.1554 35 1 2.1308 -1.5201 -2.1407 36 1 0.7510 -2.2372 -1.2736 37 1 3.6295 -3.2558 -1.2315 38 1 2.2600 -4.0142 -2.0800 39 1 2.6949 -5.1188 0.1041 40 1 1.0944 -4.3407 0.0781 41 1 3.5600 -5.7189 1.8446 42 1 3.1808 -6.9554 3.9384 43 1 1.7333 -6.0044 5.6869 44 1 0.6784 -3.8056 5.3568 45 1 1.0522 -2.5601 3.2673 46 1 0.7517 -2.2612 1.2509 47 1 2.1005 -1.5118 2.1379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331169316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:19 Heat of formation + Delta-G solvation = 3.742260 kcal Electronic energy + Delta-G solvation = -26588.844993 eV Core-core repulsion = 22964.380301 eV Total energy + Delta-G solvation = -3624.464692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53811 -40.27380 -38.79743 -36.65571 -35.69347 -34.40775 -33.66256 -32.15672 -30.84651 -29.93480 -29.00129 -27.59376 -25.64838 -25.18373 -23.89515 -22.52515 -22.19821 -21.20868 -20.50832 -19.26268 -18.54550 -18.28488 -17.13935 -17.00252 -16.64291 -16.40213 -16.20714 -15.93030 -15.52653 -15.30459 -14.87108 -14.79134 -14.52398 -14.46039 -14.39067 -13.99637 -13.92394 -13.57551 -13.30760 -13.17345 -12.95420 -12.68106 -12.60758 -12.38970 -12.33347 -12.04245 -12.01858 -11.93629 -11.79342 -11.65591 -11.50065 -11.00662 -10.72914 -10.61726 -10.06749 -9.84231 -8.82042 -8.75055 -8.17759 -6.35962 0.47489 0.50367 1.36741 1.42405 1.48914 1.57026 1.84130 2.39893 2.70408 2.97279 3.07917 3.43629 3.67055 3.74354 3.91364 4.00105 4.08946 4.16656 4.21242 4.32142 4.33373 4.43202 4.50362 4.55704 4.57947 4.62320 4.67740 4.73682 4.80908 4.87061 4.91537 5.03971 5.09463 5.16013 5.20387 5.22088 5.34196 5.36129 5.38464 5.53994 5.67284 5.67752 5.87102 5.90237 6.08711 6.09848 6.27975 6.35471 6.71410 6.79686 7.28772 7.65963 8.87795 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.002591 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.623069 B =10804.872221 C =11285.184181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.601 5.601 3 C 0.528 3.472 4 O -0.535 6.535 5 N -0.608 5.608 6 C 0.213 3.787 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.002 3.998 10 N -0.932 5.932 11 Si 0.977 3.023 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.264 1.264 15 C 0.158 3.842 16 H 0.088 0.912 17 C -0.128 4.128 18 C -0.108 4.108 19 C 0.057 3.943 20 N -0.493 5.493 21 C 0.100 3.900 22 C -0.149 4.149 23 C -0.098 4.098 24 C -0.155 4.155 25 C -0.104 4.104 26 C -0.191 4.191 27 C 0.056 3.944 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.407 0.593 32 H -0.008 1.008 33 H -0.012 1.012 34 H 0.267 0.733 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.137 0.863 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.133 0.867 45 H 0.118 0.882 46 H 0.055 0.945 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 -29.872 3.358 30.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.331 5.331 3 C 0.213 3.787 4 O -0.339 6.339 5 N -0.349 5.349 6 C 0.085 3.915 7 C -0.568 4.568 8 H 0.072 0.928 9 C -0.196 4.196 10 N -0.572 5.572 11 Si 0.800 3.200 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.189 1.189 15 C 0.054 3.946 16 H 0.106 0.894 17 C -0.166 4.166 18 C -0.146 4.146 19 C -0.068 4.068 20 N -0.208 5.208 21 C 0.002 3.998 22 C -0.169 4.169 23 C -0.117 4.117 24 C -0.174 4.174 25 C -0.122 4.122 26 C -0.212 4.212 27 C -0.072 4.072 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.267 0.733 32 H 0.010 0.990 33 H 0.006 0.994 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.155 0.845 42 H 0.165 0.835 43 H 0.158 0.842 44 H 0.150 0.850 45 H 0.136 0.864 46 H 0.073 0.927 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.951 -29.193 3.899 29.600 hybrid contribution 0.216 1.067 -0.672 1.280 sum -2.735 -28.126 3.227 28.442 Atomic orbital electron populations 1.21488 0.77354 1.02978 1.01226 1.46179 1.06176 1.01086 1.79678 1.20470 0.78560 0.87367 0.92309 1.84743 1.18206 1.94810 1.36125 1.72253 1.36419 0.98608 1.27622 1.19010 0.91378 0.85773 0.95362 1.21383 1.25345 1.05277 1.04762 0.92774 1.26004 0.94705 0.97594 1.01322 1.70099 1.30112 1.18172 1.38834 0.85342 0.78539 0.77557 0.78567 1.19421 1.20336 1.18912 1.20953 0.97068 0.81866 0.94759 0.89431 1.21996 1.01665 0.96315 0.96670 1.21578 1.01233 0.94787 0.97019 1.22380 0.99643 0.96625 0.88137 1.58960 1.55388 1.04263 1.02225 1.19145 0.95217 0.93737 0.91652 1.21001 1.01988 0.94266 0.99670 1.21351 0.97277 1.00323 0.92713 1.21387 0.99290 0.96218 1.00508 1.21267 0.99117 0.95143 0.96697 1.21478 1.01242 1.01970 0.96531 1.22411 0.96716 0.89576 0.98507 0.93741 0.92308 0.88976 0.73338 0.98988 0.99401 0.92442 0.91262 0.90654 0.90900 0.88257 0.88443 0.93521 0.84491 0.83524 0.84205 0.84957 0.86364 0.92710 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.02 9.48 127.77 1.21 4.23 16 2 N -0.60 -18.34 2.84 -822.59 -2.33 -20.67 16 3 C 0.53 21.63 8.32 179.63 1.49 23.13 16 4 O -0.54 -20.96 10.58 -83.64 -0.88 -21.85 16 5 N -0.61 -30.68 9.28 -469.73 -4.36 -35.04 16 6 C 0.21 12.72 6.09 85.64 0.52 13.24 16 7 C -0.53 -32.22 9.39 25.60 0.24 -31.98 16 8 H 0.05 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.00 0.12 5.46 84.65 0.46 0.58 16 10 N -0.93 -58.35 13.29 21.45 0.28 -58.07 16 11 Si 0.98 45.50 29.54 68.60 2.03 47.53 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 15 C 0.16 3.71 2.72 45.04 0.12 3.83 16 16 H 0.09 2.30 6.86 -2.39 -0.02 2.28 16 17 C -0.13 -2.21 5.31 30.67 0.16 -2.05 16 18 C -0.11 -1.40 6.09 30.64 0.19 -1.21 16 19 C 0.06 0.80 5.26 86.32 0.45 1.25 16 20 N -0.49 -9.68 4.70 -695.39 -3.27 -12.95 16 21 C 0.10 2.02 5.64 38.21 0.22 2.24 16 22 C -0.15 -2.48 9.16 22.40 0.21 -2.28 16 23 C -0.10 -1.41 10.04 22.25 0.22 -1.18 16 24 C -0.16 -2.33 10.04 22.29 0.22 -2.11 16 25 C -0.10 -1.84 10.04 22.25 0.22 -1.62 16 26 C -0.19 -4.00 8.82 22.40 0.20 -3.80 16 27 C 0.06 1.25 3.44 86.32 0.30 1.55 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.94 7.36 -2.39 -0.02 1.92 16 30 H 0.09 1.80 6.39 -2.39 -0.02 1.78 16 31 H 0.41 12.78 9.06 -74.06 -0.67 12.11 16 32 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H -0.01 -0.74 6.74 -2.39 -0.02 -0.76 16 34 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.19 6.58 -2.39 -0.02 1.17 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 1.10 6.72 -2.39 -0.02 1.08 16 40 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.14 1.82 7.17 -2.91 -0.02 1.80 16 42 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 45 H 0.12 2.56 5.81 -2.91 -0.02 2.55 16 46 H 0.05 1.13 7.23 -2.39 -0.02 1.11 16 47 H 0.06 1.68 6.99 -2.39 -0.02 1.66 16 Total: -1.00 -75.97 372.89 -1.79 -77.76 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.30 Total: 19.46 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.44 Total: 3.83 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -9.68 Total: -126.73 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.88 Total: -21.85 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -75.97 -1.79 -77.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331169316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.499 kcal (2) G-P(sol) polarization free energy of solvation -75.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds