Wall clock time and date at job start Tue Mar 31 2020 11:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99834 * 2 1 4 4 C 1.39672 * 119.99991 * 179.97438 * 2 1 3 5 5 C 1.38936 * 120.07266 * 0.02562 * 4 2 1 6 6 C 1.38085 * 119.92178 * 179.97438 * 5 4 2 7 7 C 1.38303 * 120.07374 * 359.97438 * 6 5 4 8 8 C 1.38264 * 120.15256 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.96244 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.87289 * 158.98103 * 9 8 7 11 11 C 1.54322 * 109.88160 * 279.99975 * 9 8 7 12 12 C 1.55151 * 102.94313 * 141.76829 * 11 9 8 13 13 C 1.54915 * 101.58074 * 324.49392 * 12 11 9 14 14 N 1.47021 * 110.00991 * 37.88274 * 9 8 7 15 15 C 1.37340 * 125.64634 * 61.60604 * 14 9 8 16 16 O 1.35092 * 120.00106 * 359.97438 * 15 14 9 17 17 N 1.30101 * 120.00172 * 179.97438 * 15 14 9 18 18 C 1.46499 * 120.00527 * 174.03133 * 17 15 14 19 19 C 1.50697 * 109.47121 * 245.13633 * 18 17 15 20 20 H 1.08006 * 119.99699 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99886 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00048 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99629 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47584 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47152 * 119.99929 * 23 21 19 26 26 H 1.48497 * 109.46976 * 239.99279 * 23 21 19 27 27 C 1.38119 * 120.07524 * 0.29050 * 8 7 6 28 28 H 1.09003 * 109.47378 * 270.00226 * 1 2 3 29 29 H 1.09005 * 109.47561 * 29.99785 * 1 2 3 30 30 H 1.09003 * 109.47668 * 149.99926 * 1 2 3 31 31 H 1.08997 * 109.47210 * 270.00322 * 3 2 1 32 32 H 1.09005 * 109.47256 * 30.00112 * 3 2 1 33 33 H 1.08996 * 109.47172 * 150.00160 * 3 2 1 34 34 H 1.08001 * 120.03802 * 359.97438 * 5 4 2 35 35 H 1.07996 * 119.95929 * 179.97438 * 6 5 4 36 36 H 1.08005 * 119.92602 * 179.97438 * 7 6 5 37 37 H 1.08996 * 110.72316 * 23.39835 * 11 9 8 38 38 H 1.09006 * 110.71943 * 260.12544 * 11 9 8 39 39 H 1.09000 * 111.00715 * 206.42276 * 12 11 9 40 40 H 1.09000 * 111.04293 * 82.58343 * 12 11 9 41 41 H 1.09006 * 110.36820 * 155.84890 * 13 12 11 42 42 H 1.09002 * 110.36822 * 278.17175 * 13 12 11 43 43 H 0.96701 * 113.99945 * 174.47637 * 16 15 14 44 44 H 1.09006 * 109.46575 * 5.13367 * 18 17 15 45 45 H 1.09001 * 109.47078 * 125.12781 * 18 17 15 46 46 H 0.97003 * 119.99923 * 180.02562 * 22 21 19 47 47 H 1.08003 * 120.04216 * 179.72473 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 1.4702 -2.4137 0.0005 6 6 2.1638 -3.6077 0.0005 7 6 3.5468 -3.6059 0.0000 8 6 4.2397 -2.4094 -0.0011 9 6 5.7468 -2.4124 -0.0022 10 1 6.1189 -1.4564 -0.3706 11 6 6.2722 -2.6648 1.4267 12 6 7.5054 -3.5754 1.1877 13 6 7.0323 -4.4303 -0.0145 14 7 6.2470 -3.5041 -0.8504 15 6 6.0209 -3.6383 -2.1984 16 8 5.2813 -2.7175 -2.8542 17 7 6.5190 -4.6522 -2.8438 18 6 6.1716 -4.8674 -4.2506 19 6 5.3929 -6.1506 -4.3851 20 1 5.1786 -6.7464 -3.5101 21 6 4.9549 -6.5644 -5.6252 22 7 5.2163 -5.8391 -6.6906 23 14 3.9903 -8.1554 -5.7919 24 1 3.8313 -8.7804 -4.4543 25 1 2.6515 -7.8648 -6.3652 26 1 4.7214 -9.0859 -6.6889 27 6 3.5523 -1.2114 0.0045 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 2.3791 1.5834 -1.0276 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 0.3902 -2.4158 0.0005 35 1 1.6256 -4.5440 0.0010 36 1 4.0869 -4.5412 0.0004 37 1 5.5229 -3.1799 2.0277 38 1 6.5700 -1.7286 1.8990 39 1 7.7036 -4.2011 2.0579 40 1 8.3832 -2.9848 0.9257 41 1 7.8895 -4.8096 -0.5710 42 1 6.4070 -5.2545 0.3288 43 1 5.2471 -2.8498 -3.8115 44 1 5.5644 -4.0349 -4.6063 45 1 7.0834 -4.9317 -4.8444 46 1 4.9078 -6.1301 -7.5630 47 1 4.0941 -0.2771 0.0081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331176528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:46 Heat of formation + Delta-G solvation = 39.776320 kcal Electronic energy + Delta-G solvation = -27073.823962 eV Core-core repulsion = 23450.921823 eV Total energy + Delta-G solvation = -3622.902138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.03236 -38.77979 -37.49312 -35.89370 -33.40708 -32.30307 -31.64619 -30.80636 -29.92839 -28.72714 -27.26648 -26.78161 -24.77313 -23.72137 -22.09870 -21.61894 -21.32798 -19.95057 -19.13675 -17.53658 -16.87767 -16.35050 -15.94019 -15.75459 -15.38969 -15.28858 -15.14377 -14.47133 -14.15096 -13.89788 -13.63646 -13.58448 -13.26945 -12.84978 -12.77847 -12.57062 -12.40171 -12.26989 -12.19472 -12.01874 -11.92813 -11.54949 -11.48620 -11.11158 -11.01631 -10.86243 -10.79034 -10.70835 -10.53099 -10.01871 -9.67543 -9.61631 -9.00090 -8.54680 -8.49282 -8.01365 -7.18569 -6.97685 -5.97732 -4.01071 1.61948 1.86136 3.05190 3.15284 3.33511 3.40065 3.46285 3.74879 4.07952 4.49628 4.55959 4.74902 4.80501 4.86839 4.99020 5.06841 5.10116 5.19470 5.21520 5.34866 5.36095 5.40476 5.45494 5.52460 5.56922 5.60311 5.73094 5.77397 5.79265 5.86915 5.92542 6.06708 6.16897 6.19978 6.27651 6.40884 6.46627 6.79518 6.90946 7.01875 7.07483 7.22581 7.25974 7.54837 7.58544 7.72955 7.98233 8.35951 8.42288 9.03504 9.51865 9.73286 11.09988 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.004130 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.339827 B = 6778.234839 C = 8221.354716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.643 5.643 3 C 0.096 3.904 4 C 0.207 3.793 5 C -0.199 4.199 6 C -0.074 4.074 7 C -0.145 4.145 8 C -0.038 4.038 9 C 0.191 3.809 10 H 0.073 0.927 11 C -0.121 4.121 12 C -0.135 4.135 13 C 0.140 3.860 14 N -0.596 5.596 15 C 0.558 3.442 16 O -0.540 6.540 17 N -0.633 5.633 18 C 0.205 3.795 19 C -0.499 4.499 20 H 0.061 0.939 21 C 0.054 3.946 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.283 1.283 27 C -0.183 4.183 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.414 0.586 44 H -0.017 1.017 45 H 0.035 0.965 46 H 0.261 0.739 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 13.418 18.820 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.357 5.357 3 C -0.047 4.047 4 C 0.108 3.892 5 C -0.221 4.221 6 C -0.092 4.092 7 C -0.165 4.165 8 C -0.040 4.040 9 C 0.086 3.914 10 H 0.090 0.910 11 C -0.159 4.159 12 C -0.173 4.173 13 C 0.018 3.982 14 N -0.325 5.325 15 C 0.246 3.754 16 O -0.341 6.341 17 N -0.382 5.382 18 C 0.078 3.922 19 C -0.538 4.538 20 H 0.080 0.920 21 C -0.147 4.147 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.209 1.209 27 C -0.205 4.205 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.275 0.725 44 H 0.001 0.999 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.295 13.243 19.127 23.658 hybrid contribution -1.232 -0.356 -1.502 1.975 sum -5.526 12.887 17.626 22.523 Atomic orbital electron populations 1.21563 0.79911 1.02489 1.00702 1.46203 1.04692 1.03138 1.81642 1.21568 0.97126 0.84962 1.01037 1.17691 0.91056 0.85424 0.95071 1.20592 0.99158 0.91238 1.11109 1.20853 0.94238 0.97061 0.97073 1.20723 0.93750 0.97718 1.04322 1.19854 0.95046 0.92730 0.96332 1.20263 0.89460 0.91166 0.90543 0.90955 1.22657 0.97830 1.00632 0.94751 1.22843 0.97631 0.98538 0.98330 1.21942 0.95236 0.91273 0.89756 1.45489 1.57757 1.27367 1.01841 1.19429 0.86633 0.85568 0.83793 1.84412 1.69579 1.52855 1.27259 1.72379 1.31143 1.20212 1.14495 1.19374 0.95348 0.95392 0.82122 1.21218 1.32920 1.06391 0.93236 0.92046 1.25006 0.96489 0.97489 0.95705 1.69957 1.46909 1.38496 0.98683 0.86417 0.79487 0.83299 0.78116 1.19676 1.21089 1.20947 1.20354 0.91798 0.97721 1.10674 0.93791 0.91913 0.91361 0.93597 0.91978 0.91393 0.86586 0.86458 0.86484 0.90261 0.90237 0.89915 0.90698 0.89979 0.92312 0.72453 0.99947 0.94706 0.92971 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 10.19 59.85 0.61 1.45 16 2 N -0.64 -7.22 3.41 -187.54 -0.64 -7.86 16 3 C 0.10 0.84 10.19 59.85 0.61 1.45 16 4 C 0.21 2.84 6.55 -83.79 -0.55 2.30 16 5 C -0.20 -2.76 9.21 -39.38 -0.36 -3.12 16 6 C -0.07 -1.10 10.04 -39.61 -0.40 -1.50 16 7 C -0.15 -2.34 9.16 -39.55 -0.36 -2.70 16 8 C -0.04 -0.56 4.12 -104.65 -0.43 -0.99 16 9 C 0.19 2.67 3.09 -68.10 -0.21 2.46 16 10 H 0.07 1.01 8.04 -51.93 -0.42 0.60 16 11 C -0.12 -1.24 6.46 -24.90 -0.16 -1.40 16 12 C -0.14 -1.36 7.08 -24.58 -0.17 -1.54 16 13 C 0.14 2.02 6.92 -2.53 -0.02 2.00 16 14 N -0.60 -10.19 2.37 -166.90 -0.40 -10.59 16 15 C 0.56 11.96 8.35 -88.57 -0.74 11.22 16 16 O -0.54 -11.40 12.74 -16.98 -0.22 -11.61 16 17 N -0.63 -15.63 9.99 -63.71 -0.64 -16.27 16 18 C 0.20 5.68 6.04 -5.20 -0.03 5.65 16 19 C -0.50 -14.91 9.39 -34.44 -0.32 -15.23 16 20 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 21 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 23 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 C -0.18 -2.55 8.84 -39.38 -0.35 -2.90 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.07 0.61 6.20 -51.93 -0.32 0.29 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.07 0.57 6.19 -51.93 -0.32 0.25 16 34 H 0.12 1.38 6.14 -52.49 -0.32 1.06 16 35 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.12 2.01 7.67 -52.48 -0.40 1.61 16 37 H 0.08 0.81 7.82 -51.93 -0.41 0.40 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 1.30 8.02 -51.93 -0.42 0.88 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.41 8.73 5.91 45.56 0.27 9.00 16 44 H -0.02 -0.46 5.29 -51.93 -0.27 -0.73 16 45 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.12 1.43 6.13 -52.48 -0.32 1.11 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -34.51 378.48 -10.16 -44.67 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.70 Total: 6.42 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.99 Total: -1.37 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.94 Total: -61.25 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.22 Total: -11.61 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.51 -10.16 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331176528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.443 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds