Wall clock time and date at job start Tue Mar 31 2020 11:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99834 * 2 1 4 4 C 1.39672 * 119.99991 * 179.97438 * 2 1 3 5 5 C 1.38936 * 120.07266 * 0.02562 * 4 2 1 6 6 C 1.38085 * 119.92178 * 179.97438 * 5 4 2 7 7 C 1.38303 * 120.07374 * 359.97438 * 6 5 4 8 8 C 1.38264 * 120.15256 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.96244 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.87289 * 158.98103 * 9 8 7 11 11 C 1.54322 * 109.88160 * 279.99975 * 9 8 7 12 12 C 1.55151 * 102.94313 * 141.76829 * 11 9 8 13 13 C 1.54915 * 101.58074 * 324.49392 * 12 11 9 14 14 N 1.47021 * 110.00991 * 37.88274 * 9 8 7 15 15 C 1.37340 * 125.64634 * 61.60604 * 14 9 8 16 16 O 1.35092 * 120.00106 * 359.97438 * 15 14 9 17 17 N 1.30101 * 120.00172 * 179.97438 * 15 14 9 18 18 C 1.46499 * 120.00527 * 174.03133 * 17 15 14 19 19 C 1.50697 * 109.47121 * 245.13633 * 18 17 15 20 20 H 1.08006 * 119.99699 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99886 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00048 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99629 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47584 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47152 * 119.99929 * 23 21 19 26 26 H 1.48497 * 109.46976 * 239.99279 * 23 21 19 27 27 C 1.38119 * 120.07524 * 0.29050 * 8 7 6 28 28 H 1.09003 * 109.47378 * 270.00226 * 1 2 3 29 29 H 1.09005 * 109.47561 * 29.99785 * 1 2 3 30 30 H 1.09003 * 109.47668 * 149.99926 * 1 2 3 31 31 H 1.08997 * 109.47210 * 270.00322 * 3 2 1 32 32 H 1.09005 * 109.47256 * 30.00112 * 3 2 1 33 33 H 1.08996 * 109.47172 * 150.00160 * 3 2 1 34 34 H 1.08001 * 120.03802 * 359.97438 * 5 4 2 35 35 H 1.07996 * 119.95929 * 179.97438 * 6 5 4 36 36 H 1.08005 * 119.92602 * 179.97438 * 7 6 5 37 37 H 1.08996 * 110.72316 * 23.39835 * 11 9 8 38 38 H 1.09006 * 110.71943 * 260.12544 * 11 9 8 39 39 H 1.09000 * 111.00715 * 206.42276 * 12 11 9 40 40 H 1.09000 * 111.04293 * 82.58343 * 12 11 9 41 41 H 1.09006 * 110.36820 * 155.84890 * 13 12 11 42 42 H 1.09002 * 110.36822 * 278.17175 * 13 12 11 43 43 H 0.96701 * 113.99945 * 174.47637 * 16 15 14 44 44 H 1.09006 * 109.46575 * 5.13367 * 18 17 15 45 45 H 1.09001 * 109.47078 * 125.12781 * 18 17 15 46 46 H 0.97003 * 119.99923 * 180.02562 * 22 21 19 47 47 H 1.08003 * 120.04216 * 179.72473 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 1.4702 -2.4137 0.0005 6 6 2.1638 -3.6077 0.0005 7 6 3.5468 -3.6059 0.0000 8 6 4.2397 -2.4094 -0.0011 9 6 5.7468 -2.4124 -0.0022 10 1 6.1189 -1.4564 -0.3706 11 6 6.2722 -2.6648 1.4267 12 6 7.5054 -3.5754 1.1877 13 6 7.0323 -4.4303 -0.0145 14 7 6.2470 -3.5041 -0.8504 15 6 6.0209 -3.6383 -2.1984 16 8 5.2813 -2.7175 -2.8542 17 7 6.5190 -4.6522 -2.8438 18 6 6.1716 -4.8674 -4.2506 19 6 5.3929 -6.1506 -4.3851 20 1 5.1786 -6.7464 -3.5101 21 6 4.9549 -6.5644 -5.6252 22 7 5.2163 -5.8391 -6.6906 23 14 3.9903 -8.1554 -5.7919 24 1 3.8313 -8.7804 -4.4543 25 1 2.6515 -7.8648 -6.3652 26 1 4.7214 -9.0859 -6.6889 27 6 3.5523 -1.2114 0.0045 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 2.3791 1.5834 -1.0276 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 0.3902 -2.4158 0.0005 35 1 1.6256 -4.5440 0.0010 36 1 4.0869 -4.5412 0.0004 37 1 5.5229 -3.1799 2.0277 38 1 6.5700 -1.7286 1.8990 39 1 7.7036 -4.2011 2.0579 40 1 8.3832 -2.9848 0.9257 41 1 7.8895 -4.8096 -0.5710 42 1 6.4070 -5.2545 0.3288 43 1 5.2471 -2.8498 -3.8115 44 1 5.5644 -4.0349 -4.6063 45 1 7.0834 -4.9317 -4.8444 46 1 4.9078 -6.1301 -7.5630 47 1 4.0941 -0.2771 0.0081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331176528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:45 Heat of formation + Delta-G solvation = 16.088792 kcal Electronic energy + Delta-G solvation = -27074.851130 eV Core-core repulsion = 23450.921823 eV Total energy + Delta-G solvation = -3623.929307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.22237 -40.11669 -38.89033 -36.85738 -35.51561 -34.07912 -32.75256 -32.35308 -30.95421 -29.58204 -28.79927 -28.23152 -25.67037 -25.45879 -23.59954 -22.82963 -22.34090 -21.20091 -20.56558 -18.77380 -18.60864 -18.09234 -17.63084 -16.94334 -16.55848 -16.39190 -16.31366 -15.91411 -15.55859 -15.18981 -14.91523 -14.61622 -14.44225 -14.29937 -14.06334 -13.78890 -13.66143 -13.42796 -13.41434 -13.19728 -13.07599 -12.86322 -12.83136 -12.71024 -12.48440 -12.17207 -12.10755 -11.99807 -11.78260 -11.72933 -11.49074 -10.80410 -10.68353 -10.56393 -9.99034 -9.63406 -8.72930 -8.18615 -8.13639 -6.36353 0.50650 0.73538 1.35454 1.36669 1.50378 1.63902 1.97986 2.28690 2.40335 2.95701 3.04839 3.21534 3.68922 3.78977 3.91936 4.04086 4.18515 4.19729 4.29546 4.36755 4.44535 4.50363 4.53383 4.58154 4.63861 4.70902 4.82106 4.84598 4.90610 4.92584 4.93108 4.99363 5.05014 5.06810 5.14397 5.17224 5.30653 5.37384 5.39901 5.63933 5.65837 5.67960 5.82095 5.96062 5.97367 6.22944 6.40448 6.59344 6.68044 6.80559 7.29853 7.82446 8.84669 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.004130 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.339827 B = 6778.234839 C = 8221.354716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.647 5.647 3 C 0.090 3.910 4 C 0.205 3.795 5 C -0.208 4.208 6 C -0.085 4.085 7 C -0.173 4.173 8 C -0.043 4.043 9 C 0.182 3.818 10 H 0.077 0.923 11 C -0.109 4.109 12 C -0.117 4.117 13 C 0.128 3.872 14 N -0.592 5.592 15 C 0.569 3.431 16 O -0.537 6.537 17 N -0.669 5.669 18 C 0.219 3.781 19 C -0.526 4.526 20 H 0.046 0.954 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.970 3.030 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.272 1.272 27 C -0.192 4.192 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.413 0.587 44 H -0.022 1.022 45 H 0.002 0.998 46 H 0.267 0.733 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 14.752 20.798 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.359 5.359 3 C -0.052 4.052 4 C 0.103 3.897 5 C -0.230 4.230 6 C -0.103 4.103 7 C -0.193 4.193 8 C -0.045 4.045 9 C 0.078 3.922 10 H 0.095 0.905 11 C -0.146 4.146 12 C -0.155 4.155 13 C 0.007 3.993 14 N -0.320 5.320 15 C 0.257 3.743 16 O -0.337 6.337 17 N -0.421 5.421 18 C 0.091 3.909 19 C -0.564 4.564 20 H 0.065 0.935 21 C -0.192 4.192 22 N -0.569 5.569 23 Si 0.794 3.206 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.214 4.214 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.273 0.727 44 H -0.005 1.005 45 H 0.020 0.980 46 H 0.076 0.924 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.316 14.637 21.162 26.274 hybrid contribution -0.982 -0.620 -2.046 2.353 sum -6.298 14.017 19.115 24.526 Atomic orbital electron populations 1.21743 0.78520 1.03191 1.01770 1.46514 1.05815 1.03007 1.80539 1.21747 0.97712 0.84437 1.01337 1.17892 0.91309 0.86460 0.94001 1.20801 1.00133 0.91005 1.11098 1.21024 0.94069 0.98059 0.97194 1.20661 0.94382 0.97389 1.06897 1.19949 0.95493 0.92751 0.96287 1.20624 0.89177 0.90120 0.92236 0.90526 1.22677 0.97577 1.02240 0.92136 1.22816 0.97678 0.98054 0.96932 1.22203 0.94230 0.91954 0.90922 1.45914 1.57095 1.28589 1.00357 1.19813 0.84898 0.84327 0.85279 1.84415 1.69447 1.52666 1.27175 1.72327 1.34172 1.22661 1.12989 1.18992 0.93362 0.94680 0.83899 1.21431 1.34212 1.07492 0.93271 0.93535 1.25888 0.97155 1.01084 0.95050 1.70057 1.47415 1.40162 0.99247 0.85330 0.78272 0.78778 0.78214 1.19509 1.19826 1.19681 1.20547 0.92217 0.97948 1.10736 0.92459 0.90021 0.91910 0.93832 0.89452 0.91006 0.84838 0.85853 0.88632 0.90032 0.86986 0.86945 0.89605 0.91836 0.92821 0.72677 1.00522 0.97987 0.92389 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.19 127.77 1.30 2.64 16 2 N -0.65 -13.01 3.41 -747.26 -2.55 -15.55 16 3 C 0.09 1.33 10.19 127.77 1.30 2.63 16 4 C 0.21 5.34 6.55 38.22 0.25 5.59 16 5 C -0.21 -5.62 9.21 22.40 0.21 -5.41 16 6 C -0.08 -2.57 10.04 22.25 0.22 -2.34 16 7 C -0.17 -5.68 9.16 22.29 0.20 -5.48 16 8 C -0.04 -1.26 4.12 -19.89 -0.08 -1.34 16 9 C 0.18 4.88 3.09 44.60 0.14 5.02 16 10 H 0.08 2.01 8.04 -2.39 -0.02 1.99 16 11 C -0.11 -1.92 6.46 31.78 0.21 -1.72 16 12 C -0.12 -2.05 7.08 31.99 0.23 -1.82 16 13 C 0.13 3.70 6.92 86.86 0.60 4.30 16 14 N -0.59 -20.42 2.37 -792.40 -1.88 -22.30 16 15 C 0.57 25.21 8.35 179.63 1.50 26.71 16 16 O -0.54 -23.35 12.74 -83.67 -1.07 -24.41 16 17 N -0.67 -34.73 9.99 -469.72 -4.69 -39.43 16 18 C 0.22 12.81 6.04 85.63 0.52 13.33 16 19 C -0.53 -32.65 9.39 25.60 0.24 -32.41 16 20 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 21 C 0.01 0.40 5.46 84.65 0.46 0.86 16 22 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 23 Si 0.97 46.62 29.54 68.60 2.03 48.64 16 24 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 27 C -0.19 -5.09 8.84 22.40 0.20 -4.89 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.91 8.07 -2.38 -0.02 0.89 16 30 H 0.06 1.00 6.20 -2.39 -0.01 0.99 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.86 8.07 -2.38 -0.02 0.84 16 33 H 0.07 1.00 6.19 -2.39 -0.01 0.99 16 34 H 0.13 3.01 6.14 -2.91 -0.02 2.99 16 35 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.10 3.46 7.67 -2.91 -0.02 3.44 16 37 H 0.08 1.46 7.82 -2.39 -0.02 1.44 16 38 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 2.06 8.02 -2.38 -0.02 2.05 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.41 18.27 5.91 -74.06 -0.44 17.83 16 44 H -0.02 -1.29 5.29 -2.38 -0.01 -1.31 16 45 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 47 H 0.13 2.99 6.13 -2.91 -0.02 2.97 16 Total: -1.00 -77.21 378.48 0.15 -77.06 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.53 Total: 27.34 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 7.49 Total: 5.66 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -8.84 Total: -134.29 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.07 Total: -24.41 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.64 kcal Total: -77.21 0.15 -77.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331176528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.151 kcal (2) G-P(sol) polarization free energy of solvation -77.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds