Wall clock time and date at job start Tue Mar 31 2020 11:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46906 * 110.99658 * 2 1 4 4 C 1.39924 * 111.00190 * 236.04809 * 2 1 3 5 5 C 1.38710 * 120.10092 * 59.99659 * 4 2 1 6 6 C 1.38229 * 119.99382 * 180.02562 * 5 4 2 7 7 C 1.38270 * 120.19204 * 0.02562 * 6 5 4 8 8 C 1.38245 * 120.19568 * 359.97438 * 7 6 5 9 9 C 1.38651 * 120.00682 * 359.68246 * 8 7 6 10 10 N 1.40201 * 120.10007 * 180.29243 * 9 8 7 11 11 C 1.34771 * 119.99902 * 24.78241 * 10 9 8 12 12 O 1.21595 * 120.00210 * 5.69626 * 11 10 9 13 13 N 1.34782 * 120.00369 * 185.69608 * 11 10 9 14 14 C 1.46925 * 120.62495 * 4.85393 * 13 11 10 15 15 C 1.52762 * 109.00968 * 233.57917 * 14 13 11 16 16 C 1.53037 * 109.38696 * 305.59438 * 15 14 13 17 17 C 1.50694 * 109.45179 * 181.24960 * 16 15 14 18 18 H 1.08002 * 120.00095 * 239.93459 * 17 16 15 19 19 C 1.37877 * 119.99889 * 59.93742 * 17 16 15 20 20 N 1.31507 * 120.00058 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47305 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47271 * 120.00110 * 21 19 17 24 24 H 1.48498 * 109.46967 * 239.99657 * 21 19 17 25 25 C 1.53046 * 109.53957 * 61.23327 * 16 15 14 26 26 C 1.46920 * 120.63291 * 185.13296 * 13 11 10 27 27 H 1.08998 * 109.47027 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47381 * 60.00346 * 1 2 3 29 29 H 1.08998 * 109.47155 * 299.99955 * 1 2 3 30 30 H 1.08993 * 109.47151 * 60.00070 * 3 2 1 31 31 H 1.09004 * 109.47065 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46939 * 299.99291 * 3 2 1 33 33 H 1.08001 * 119.99799 * 359.97438 * 5 4 2 34 34 H 1.07997 * 119.90277 * 180.02562 * 6 5 4 35 35 H 1.08003 * 119.90167 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.00242 * 179.97438 * 8 7 6 37 37 H 0.96997 * 120.00196 * 204.77538 * 10 9 8 38 38 H 1.08996 * 109.59187 * 353.41917 * 14 13 11 39 39 H 1.09005 * 109.58475 * 113.84781 * 14 13 11 40 40 H 1.08999 * 109.56927 * 185.55066 * 15 14 13 41 41 H 1.09008 * 109.38058 * 65.51670 * 15 14 13 42 42 H 1.09002 * 109.46107 * 301.21769 * 16 15 14 43 43 H 0.97003 * 119.99868 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.49901 * 178.68863 * 25 16 15 45 45 H 1.08999 * 109.52137 * 58.60499 * 25 16 15 46 46 H 1.09000 * 109.58670 * 246.15644 * 26 13 11 47 47 H 1.09001 * 109.58979 * 6.44064 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9705 -0.7296 -1.0836 5 6 1.6596 -0.3503 -2.3811 6 6 2.1558 -1.0730 -3.4499 7 6 2.9618 -2.1747 -3.2301 8 6 3.2767 -2.5596 -1.9402 9 6 2.7893 -1.8365 -0.8623 10 7 3.1124 -2.2215 0.4465 11 6 4.2359 -2.9272 0.6834 12 8 5.0214 -3.1410 -0.2198 13 7 4.4889 -3.3960 1.9215 14 6 3.5014 -3.2382 2.9978 15 6 4.1726 -2.5663 4.1943 16 6 5.4159 -3.3643 4.5936 17 6 6.0620 -2.7200 5.7929 18 1 7.0783 -2.3599 5.7305 19 6 5.3557 -2.5903 6.9699 20 7 4.1180 -3.0283 7.0457 21 14 6.1564 -1.7910 8.4563 22 1 7.5434 -1.3860 8.1136 23 1 5.3748 -0.5931 8.8554 24 1 6.1877 -2.7590 9.5820 25 6 6.4081 -3.3829 3.4284 26 6 5.7598 -4.0691 2.2219 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.6459 1.8948 0.8899 31 1 3.0850 1.3425 -0.0005 32 1 1.6459 1.8948 -0.8901 33 1 1.0292 0.5090 -2.5562 34 1 1.9131 -0.7762 -4.4595 35 1 3.3466 -2.7362 -4.0686 36 1 3.9062 -3.4209 -1.7721 37 1 2.5274 -1.9800 1.1815 38 1 2.6756 -2.6185 2.6483 39 1 3.1257 -4.2172 3.2955 40 1 3.4766 -2.5336 5.0326 41 1 4.4633 -1.5513 3.9231 42 1 5.1277 -4.3859 4.8413 43 1 3.6210 -2.9367 7.8737 44 1 7.3031 -3.9316 3.7215 45 1 6.6783 -2.3607 3.1637 46 1 5.5721 -5.1172 2.4549 47 1 6.4229 -3.9996 1.3595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334172603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:31 Heat of formation + Delta-G solvation = 16.521999 kcal Electronic energy + Delta-G solvation = -27241.451915 eV Core-core repulsion = 23617.541394 eV Total energy + Delta-G solvation = -3623.910521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77541 -39.38630 -37.16777 -36.35896 -34.58290 -33.52707 -31.33009 -30.12836 -30.01175 -29.05807 -27.73803 -26.14743 -24.63445 -23.51371 -22.56786 -22.04306 -21.10295 -20.13395 -18.84145 -18.08247 -17.20318 -16.58045 -16.28015 -15.64816 -15.25224 -15.04800 -14.92903 -14.59206 -14.38178 -13.97657 -13.68210 -13.57847 -13.15735 -13.01120 -12.71095 -12.62478 -12.44311 -12.36538 -12.23957 -11.89784 -11.84948 -11.57967 -11.37214 -11.30642 -10.97656 -10.63563 -10.39608 -10.36080 -10.14593 -9.69519 -9.55219 -9.18692 -8.95583 -8.79352 -8.68198 -8.40264 -8.16572 -7.72120 -6.04733 -4.10553 1.26708 1.41483 2.89463 3.26278 3.34769 3.35497 3.39247 3.70488 3.89396 4.14144 4.39958 4.84816 4.98051 5.03656 5.12469 5.20827 5.24654 5.32417 5.36336 5.46859 5.56979 5.61204 5.68699 5.74835 5.78114 5.89769 5.91896 6.05461 6.14816 6.19568 6.26488 6.31101 6.44096 6.52790 6.62953 6.66434 6.69519 6.83534 6.91367 6.97554 7.11956 7.19151 7.35044 7.41710 7.65770 7.90493 8.01755 8.19438 8.38905 8.80238 8.93078 9.54724 11.00773 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.003384 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.344417 B = 8271.375211 C = 9321.798282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.508 5.508 3 C 0.031 3.969 4 C 0.040 3.960 5 C -0.126 4.126 6 C -0.143 4.143 7 C -0.099 4.099 8 C -0.132 4.132 9 C 0.206 3.794 10 N -0.674 5.674 11 C 0.703 3.297 12 O -0.590 6.590 13 N -0.611 5.611 14 C 0.108 3.892 15 C -0.124 4.124 16 C 0.049 3.951 17 C -0.510 4.510 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.125 4.125 26 C 0.129 3.871 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.152 0.848 37 H 0.415 0.585 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.039 0.961 42 H 0.028 0.972 43 H 0.260 0.740 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 4.176 -16.334 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.229 5.229 3 C -0.115 4.115 4 C -0.057 4.057 5 C -0.147 4.147 6 C -0.163 4.163 7 C -0.118 4.118 8 C -0.153 4.153 9 C 0.108 3.892 10 N -0.322 5.322 11 C 0.406 3.594 12 O -0.469 6.469 13 N -0.347 5.347 14 C -0.014 4.014 15 C -0.163 4.163 16 C 0.031 3.969 17 C -0.549 4.549 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.163 4.163 26 C 0.006 3.994 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.169 0.831 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.811 3.730 -16.251 18.412 hybrid contribution -0.303 1.142 0.630 1.339 sum -8.114 4.872 -15.620 18.264 Atomic orbital electron populations 1.22467 0.86078 1.02475 1.00927 1.59482 1.08291 1.14411 1.40749 1.22423 1.01109 0.87229 1.00769 1.18419 1.02617 0.95238 0.89393 1.21276 1.00908 1.00089 0.92386 1.20901 1.00053 0.96990 0.98353 1.21068 0.97392 0.96797 0.96553 1.21496 1.01520 1.01365 0.90918 1.17481 0.95455 0.92122 0.84186 1.42848 1.25188 1.56089 1.08056 1.15868 0.81196 0.78796 0.83570 1.90816 1.48521 1.64290 1.43295 1.47486 1.19828 1.59407 1.07935 1.21879 0.90036 1.00824 0.88705 1.21951 1.01158 0.97782 0.95360 1.18626 0.90841 0.96249 0.91216 1.21244 0.99268 1.38704 0.95652 0.92648 1.24956 0.94922 0.95481 0.98617 1.69839 1.09502 1.47063 1.26663 0.86567 0.79609 0.79107 0.82903 1.19837 1.21077 1.21072 1.22039 0.99406 0.99602 0.95259 1.21628 0.83506 0.95236 0.98986 0.91224 0.95205 0.90799 0.90809 0.91126 0.95237 0.86426 0.86407 0.85910 0.83063 0.74501 0.92364 0.91671 0.87690 0.94225 0.95400 0.93049 0.92000 0.92961 0.92160 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.29 60.06 0.56 0.81 16 2 N -0.51 -5.89 4.32 -186.66 -0.81 -6.70 16 3 C 0.03 0.33 9.33 60.07 0.56 0.89 16 4 C 0.04 0.51 4.73 -83.54 -0.40 0.12 16 5 C -0.13 -1.40 8.66 -39.41 -0.34 -1.74 16 6 C -0.14 -1.52 10.04 -39.57 -0.40 -1.92 16 7 C -0.10 -1.18 10.04 -39.57 -0.40 -1.57 16 8 C -0.13 -1.93 8.72 -39.43 -0.34 -2.27 16 9 C 0.21 3.06 6.45 -83.42 -0.54 2.53 16 10 N -0.67 -10.60 5.18 -14.07 -0.07 -10.67 16 11 C 0.70 12.79 8.11 -86.92 -0.70 12.08 16 12 O -0.59 -11.89 12.95 5.28 0.07 -11.82 16 13 N -0.61 -11.06 2.98 -178.76 -0.53 -11.59 16 14 C 0.11 1.91 6.40 -3.93 -0.03 1.89 16 15 C -0.12 -2.68 5.14 -26.83 -0.14 -2.82 16 16 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 17 C -0.51 -13.45 8.56 -34.44 -0.29 -13.75 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 20 N -0.89 -24.11 11.30 55.43 0.63 -23.48 16 21 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 26 C 0.13 2.34 6.42 -3.71 -0.02 2.32 16 27 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 28 H 0.03 0.24 7.27 -51.93 -0.38 -0.13 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.03 0.27 7.48 -51.93 -0.39 -0.12 16 33 H 0.12 1.09 7.08 -52.49 -0.37 0.72 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 36 H 0.15 2.47 5.79 -52.49 -0.30 2.16 16 37 H 0.41 6.12 5.76 -40.82 -0.24 5.88 16 38 H 0.06 0.90 5.58 -51.93 -0.29 0.61 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.11 2.53 6.03 -51.93 -0.31 2.22 16 41 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.45 7.03 -51.93 -0.37 1.08 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -28.88 367.72 -10.36 -39.24 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.26 Total: 7.44 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.91 Total: -3.62 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.79 Total: -52.45 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.88 -10.36 -39.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334172603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.758 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds