Wall clock time and date at job start Tue Mar 31 2020 11:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46906 * 110.99658 * 2 1 4 4 C 1.39924 * 111.00190 * 236.04809 * 2 1 3 5 5 C 1.38710 * 120.10092 * 59.99659 * 4 2 1 6 6 C 1.38229 * 119.99382 * 180.02562 * 5 4 2 7 7 C 1.38270 * 120.19204 * 0.02562 * 6 5 4 8 8 C 1.38245 * 120.19568 * 359.97438 * 7 6 5 9 9 C 1.38651 * 120.00682 * 359.68246 * 8 7 6 10 10 N 1.40201 * 120.10007 * 180.29243 * 9 8 7 11 11 C 1.34771 * 119.99902 * 24.78241 * 10 9 8 12 12 O 1.21595 * 120.00210 * 5.69626 * 11 10 9 13 13 N 1.34782 * 120.00369 * 185.69608 * 11 10 9 14 14 C 1.46925 * 120.62495 * 4.85393 * 13 11 10 15 15 C 1.52762 * 109.00968 * 233.57917 * 14 13 11 16 16 C 1.53037 * 109.38696 * 305.59438 * 15 14 13 17 17 C 1.50694 * 109.45179 * 181.24960 * 16 15 14 18 18 H 1.08002 * 120.00095 * 239.93459 * 17 16 15 19 19 C 1.37877 * 119.99889 * 59.93742 * 17 16 15 20 20 N 1.31507 * 120.00058 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47305 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47271 * 120.00110 * 21 19 17 24 24 H 1.48498 * 109.46967 * 239.99657 * 21 19 17 25 25 C 1.53046 * 109.53957 * 61.23327 * 16 15 14 26 26 C 1.46920 * 120.63291 * 185.13296 * 13 11 10 27 27 H 1.08998 * 109.47027 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47381 * 60.00346 * 1 2 3 29 29 H 1.08998 * 109.47155 * 299.99955 * 1 2 3 30 30 H 1.08993 * 109.47151 * 60.00070 * 3 2 1 31 31 H 1.09004 * 109.47065 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46939 * 299.99291 * 3 2 1 33 33 H 1.08001 * 119.99799 * 359.97438 * 5 4 2 34 34 H 1.07997 * 119.90277 * 180.02562 * 6 5 4 35 35 H 1.08003 * 119.90167 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.00242 * 179.97438 * 8 7 6 37 37 H 0.96997 * 120.00196 * 204.77538 * 10 9 8 38 38 H 1.08996 * 109.59187 * 353.41917 * 14 13 11 39 39 H 1.09005 * 109.58475 * 113.84781 * 14 13 11 40 40 H 1.08999 * 109.56927 * 185.55066 * 15 14 13 41 41 H 1.09008 * 109.38058 * 65.51670 * 15 14 13 42 42 H 1.09002 * 109.46107 * 301.21769 * 16 15 14 43 43 H 0.97003 * 119.99868 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.49901 * 178.68863 * 25 16 15 45 45 H 1.08999 * 109.52137 * 58.60499 * 25 16 15 46 46 H 1.09000 * 109.58670 * 246.15644 * 26 13 11 47 47 H 1.09001 * 109.58979 * 6.44064 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9705 -0.7296 -1.0836 5 6 1.6596 -0.3503 -2.3811 6 6 2.1558 -1.0730 -3.4499 7 6 2.9618 -2.1747 -3.2301 8 6 3.2767 -2.5596 -1.9402 9 6 2.7893 -1.8365 -0.8623 10 7 3.1124 -2.2215 0.4465 11 6 4.2359 -2.9272 0.6834 12 8 5.0214 -3.1410 -0.2198 13 7 4.4889 -3.3960 1.9215 14 6 3.5014 -3.2382 2.9978 15 6 4.1726 -2.5663 4.1943 16 6 5.4159 -3.3643 4.5936 17 6 6.0620 -2.7200 5.7929 18 1 7.0783 -2.3599 5.7305 19 6 5.3557 -2.5903 6.9699 20 7 4.1180 -3.0283 7.0457 21 14 6.1564 -1.7910 8.4563 22 1 7.5434 -1.3860 8.1136 23 1 5.3748 -0.5931 8.8554 24 1 6.1877 -2.7590 9.5820 25 6 6.4081 -3.3829 3.4284 26 6 5.7598 -4.0691 2.2219 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.6459 1.8948 0.8899 31 1 3.0850 1.3425 -0.0005 32 1 1.6459 1.8948 -0.8901 33 1 1.0292 0.5090 -2.5562 34 1 1.9131 -0.7762 -4.4595 35 1 3.3466 -2.7362 -4.0686 36 1 3.9062 -3.4209 -1.7721 37 1 2.5274 -1.9800 1.1815 38 1 2.6756 -2.6185 2.6483 39 1 3.1257 -4.2172 3.2955 40 1 3.4766 -2.5336 5.0326 41 1 4.4633 -1.5513 3.9231 42 1 5.1277 -4.3859 4.8413 43 1 3.6210 -2.9367 7.8737 44 1 7.3031 -3.9316 3.7215 45 1 6.6783 -2.3607 3.1637 46 1 5.5721 -5.1172 2.4549 47 1 6.4229 -3.9996 1.3595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334172603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:30 Heat of formation + Delta-G solvation = 1.212891 kcal Electronic energy + Delta-G solvation = -27242.115768 eV Core-core repulsion = 23617.541394 eV Total energy + Delta-G solvation = -3624.574374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00288 -40.53106 -38.64977 -37.32353 -35.85277 -35.31430 -33.04998 -31.74952 -30.95165 -30.17266 -28.48750 -27.92784 -25.48961 -25.06235 -24.10433 -23.38968 -22.06274 -21.61554 -20.30380 -19.42366 -18.50236 -18.17212 -17.57477 -16.84628 -16.60418 -16.30938 -16.11677 -15.89689 -15.42138 -15.28154 -14.92562 -14.80011 -14.67637 -14.48869 -14.29200 -14.00949 -13.60099 -13.29233 -13.18692 -13.15932 -13.06620 -12.82116 -12.76185 -12.64043 -12.43437 -12.26349 -12.15411 -11.96704 -11.52550 -11.44206 -11.06431 -10.99582 -10.76377 -10.39398 -9.72689 -9.63920 -9.50792 -8.86547 -8.06991 -6.19728 0.32617 0.43471 1.40704 1.44271 1.53983 1.57213 2.03272 2.45020 2.76607 2.85605 2.94083 3.19718 3.97972 4.03856 4.15504 4.18583 4.23765 4.33147 4.39549 4.42015 4.44432 4.48548 4.56250 4.60604 4.63830 4.69609 4.73526 4.86924 4.92443 4.97177 4.97504 5.00960 5.16139 5.20328 5.27974 5.40030 5.43221 5.50503 5.57858 5.63282 5.67368 5.90263 5.93832 5.98380 6.01982 6.13255 6.40490 6.42837 6.83746 6.89604 7.42003 7.47905 8.96533 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.003384 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.344417 B = 8271.375211 C = 9321.798282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.526 5.526 3 C 0.033 3.967 4 C 0.042 3.958 5 C -0.125 4.125 6 C -0.132 4.132 7 C -0.102 4.102 8 C -0.151 4.151 9 C 0.172 3.828 10 N -0.666 5.666 11 C 0.702 3.298 12 O -0.612 6.612 13 N -0.615 5.615 14 C 0.120 3.880 15 C -0.112 4.112 16 C 0.047 3.953 17 C -0.533 4.533 18 H 0.046 0.954 19 C 0.018 3.982 20 N -0.910 5.910 21 Si 0.948 3.052 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.114 4.114 26 C 0.135 3.865 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.418 0.582 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.025 0.975 42 H 0.006 0.994 43 H 0.261 0.739 44 H 0.067 0.933 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.684 5.394 -17.837 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.247 5.247 3 C -0.113 4.113 4 C -0.055 4.055 5 C -0.145 4.145 6 C -0.151 4.151 7 C -0.121 4.121 8 C -0.172 4.172 9 C 0.075 3.925 10 N -0.314 5.314 11 C 0.404 3.596 12 O -0.494 6.494 13 N -0.350 5.350 14 C -0.002 4.002 15 C -0.151 4.151 16 C 0.028 3.972 17 C -0.571 4.571 18 H 0.065 0.935 19 C -0.181 4.181 20 N -0.550 5.550 21 Si 0.774 3.226 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.207 1.207 25 C -0.152 4.152 26 C 0.013 3.987 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.160 0.840 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.258 0.742 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.044 0.956 42 H 0.024 0.976 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.091 0.909 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.103 4.963 -17.773 20.576 hybrid contribution 0.058 0.804 1.029 1.307 sum -9.045 5.767 -16.744 19.886 Atomic orbital electron populations 1.22501 0.84539 1.02600 1.02140 1.59450 1.09698 1.14905 1.40674 1.22412 0.99886 0.86930 1.02104 1.18548 1.01802 0.94562 0.90577 1.21585 1.00671 1.00613 0.91642 1.21293 0.98287 0.95669 0.99891 1.21325 0.97385 0.97426 0.95941 1.21423 1.02212 1.01248 0.92363 1.17771 0.97384 0.93775 0.83580 1.42685 1.24360 1.55538 1.08833 1.15961 0.81659 0.78863 0.83113 1.90801 1.49508 1.65199 1.43859 1.47458 1.19786 1.59674 1.08081 1.21707 0.90158 1.01124 0.87229 1.21695 1.00100 0.97135 0.96164 1.18594 0.92153 0.94836 0.91610 1.21561 0.99174 1.39182 0.97192 0.93535 1.25613 0.95469 0.96016 1.00963 1.69944 1.10268 1.47561 1.27238 0.85666 0.78719 0.78303 0.79893 1.19762 1.20637 1.20692 1.21882 0.99052 0.99264 0.95048 1.21530 0.83681 0.95604 0.97925 0.91664 0.93742 0.89799 0.89791 0.93119 0.93583 0.83997 0.83100 0.83861 0.85493 0.74195 0.89895 0.91150 0.90040 0.95569 0.97569 0.92938 0.91436 0.94176 0.90907 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.29 127.69 1.19 1.65 16 2 N -0.53 -11.27 4.32 -744.47 -3.22 -14.49 16 3 C 0.03 0.63 9.33 127.69 1.19 1.82 16 4 C 0.04 1.00 4.73 38.26 0.18 1.18 16 5 C -0.12 -2.38 8.66 22.38 0.19 -2.19 16 6 C -0.13 -2.37 10.04 22.28 0.22 -2.15 16 7 C -0.10 -2.24 10.04 22.28 0.22 -2.01 16 8 C -0.15 -4.40 8.72 22.37 0.20 -4.20 16 9 C 0.17 5.05 6.45 38.19 0.25 5.29 16 10 N -0.67 -20.93 5.18 -316.68 -1.64 -22.57 16 11 C 0.70 25.70 8.11 179.05 1.45 27.15 16 12 O -0.61 -25.12 12.95 -4.02 -0.05 -25.17 16 13 N -0.61 -22.29 2.98 -837.73 -2.50 -24.79 16 14 C 0.12 4.26 6.40 86.22 0.55 4.81 16 15 C -0.11 -4.95 5.14 30.53 0.16 -4.80 16 16 C 0.05 2.23 2.07 -11.51 -0.02 2.21 16 17 C -0.53 -28.64 8.56 25.60 0.22 -28.42 16 18 H 0.05 2.52 7.74 -2.91 -0.02 2.49 16 19 C 0.02 0.98 5.30 84.66 0.45 1.43 16 20 N -0.91 -49.84 11.30 21.45 0.24 -49.60 16 21 Si 0.95 42.71 29.54 68.60 2.03 44.73 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 C -0.11 -4.70 5.30 30.68 0.16 -4.53 16 26 C 0.14 4.93 6.42 86.37 0.55 5.48 16 27 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 28 H 0.04 0.58 7.27 -2.39 -0.02 0.56 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.15 8.13 -2.38 -0.02 1.13 16 32 H 0.05 0.70 7.48 -2.38 -0.02 0.69 16 33 H 0.14 2.02 7.08 -2.91 -0.02 1.99 16 34 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 36 H 0.13 4.28 5.79 -2.91 -0.02 4.27 16 37 H 0.42 12.16 5.76 -92.71 -0.53 11.63 16 38 H 0.08 2.52 5.58 -2.39 -0.01 2.50 16 39 H 0.07 2.44 8.14 -2.38 -0.02 2.43 16 40 H 0.08 4.02 6.03 -2.39 -0.01 4.00 16 41 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 44 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.08 3.00 7.03 -2.39 -0.02 2.98 16 Total: -1.00 -62.99 367.72 2.46 -60.52 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.44 Total: 28.64 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 7.16 Total: 2.72 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -7.11 Total: -111.45 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.05 Total: -25.17 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -62.99 2.46 -60.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334172603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.736 kcal (2) G-P(sol) polarization free energy of solvation -62.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds