Wall clock time and date at job start Tue Mar 31 2020 11:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36448 * 124.85254 * 2 1 4 4 C 1.34487 * 108.85396 * 179.97438 * 3 2 1 5 5 C 1.46679 * 106.33379 * 0.02562 * 4 3 2 6 6 C 1.47270 * 126.93923 * 179.73346 * 5 4 3 7 7 O 1.21626 * 119.99857 * 219.59926 * 6 5 4 8 8 N 1.34779 * 119.99952 * 39.60322 * 6 5 4 9 9 C 1.46961 * 120.59299 * 4.64203 * 8 6 5 10 10 C 1.53820 * 108.39910 * 124.76048 * 9 8 6 11 11 N 1.46968 * 108.57525 * 49.63607 * 10 9 8 12 12 C 1.36934 * 120.59155 * 124.62715 * 11 10 9 13 13 H 1.07997 * 120.00024 * 211.14932 * 12 11 10 14 14 C 1.38812 * 119.99887 * 31.14801 * 12 11 10 15 15 N 1.31614 * 120.00092 * 16.18541 * 14 12 11 16 16 Si 1.86799 * 119.99816 * 196.17845 * 14 12 11 17 17 H 1.48500 * 109.47129 * 60.00149 * 16 14 12 18 18 H 1.48506 * 109.47107 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47469 * 300.00340 * 16 14 12 20 20 C 1.46969 * 118.81222 * 304.64894 * 11 10 9 21 21 C 1.46961 * 120.59468 * 184.92663 * 8 6 5 22 22 C 1.34662 * 124.84883 * 179.97438 * 2 1 3 23 23 C 1.50697 * 125.80227 * 0.03821 * 22 2 1 24 24 C 1.53790 * 113.61373 * 37.47758 * 23 22 2 25 25 C 1.53782 * 87.07753 * 220.01574 * 24 23 22 26 26 C 1.53777 * 113.61741 * 299.97928 * 23 22 2 27 27 H 1.09003 * 109.47160 * 90.01989 * 1 2 3 28 28 H 1.09002 * 109.47213 * 210.02145 * 1 2 3 29 29 H 1.08999 * 109.47365 * 330.02015 * 1 2 3 30 30 H 1.08002 * 125.56841 * 0.02562 * 3 2 1 31 31 H 1.08004 * 126.82767 * 179.97438 * 4 3 2 32 32 H 1.09004 * 109.61372 * 244.54422 * 9 8 6 33 33 H 1.08996 * 109.61159 * 5.05388 * 9 8 6 34 34 H 1.09000 * 109.73730 * 289.85333 * 10 9 8 35 35 H 1.09000 * 109.53124 * 169.29899 * 10 9 8 36 36 H 0.97002 * 119.99935 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.60611 * 295.48041 * 20 11 10 38 38 H 1.08999 * 109.74490 * 175.05705 * 20 11 10 39 39 H 1.09008 * 109.60923 * 354.94494 * 21 8 6 40 40 H 1.08993 * 109.61158 * 115.45517 * 21 8 6 41 41 H 1.09003 * 112.84817 * 168.77907 * 23 22 2 42 42 H 1.08992 * 113.61064 * 334.56302 * 24 23 22 43 43 H 1.08996 * 113.61148 * 105.46911 * 24 23 22 44 44 H 1.08991 * 113.61528 * 270.87839 * 25 24 23 45 45 H 1.08999 * 113.61013 * 139.98137 * 25 24 23 46 46 H 1.09004 * 113.61547 * 254.52833 * 26 23 22 47 47 H 1.09003 * 113.61578 * 25.34746 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5461 -0.7177 0.0003 6 6 4.7283 -1.5958 -0.0047 7 8 4.7298 -2.6099 -0.6763 8 7 5.8087 -1.2758 0.7349 9 6 5.7843 -0.1096 1.6289 10 6 6.1539 -0.5771 3.0469 11 7 7.3794 -1.3845 2.9692 12 6 8.4773 -1.0588 3.7199 13 1 9.4685 -1.2730 3.3483 14 6 8.3163 -0.4533 4.9586 15 7 7.1434 -0.4771 5.5552 16 14 9.7645 0.3950 5.7787 17 1 10.2560 1.4906 4.9050 18 1 9.3342 0.9574 7.0841 19 1 10.8546 -0.5890 5.9994 20 6 7.4056 -2.5475 2.0709 21 6 7.0342 -2.0832 0.6572 22 6 2.2345 -1.1051 0.0005 23 6 1.7352 -2.5270 0.0003 24 6 0.4764 -2.7378 -0.8577 25 6 -0.0312 -3.6686 0.2561 26 6 0.8661 -2.8749 1.2203 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8901 0.5135 30 1 1.8828 2.1373 0.0004 31 1 4.3981 1.4017 0.0003 32 1 6.5069 0.6303 1.2848 33 1 4.7853 0.3262 1.6345 34 1 5.3442 -1.1798 3.4585 35 1 6.3273 0.2908 3.6831 36 1 7.0310 -0.0542 6.4210 37 1 6.6852 -3.2903 2.4132 38 1 8.4046 -2.9836 2.0621 39 1 6.8608 -2.9511 0.0209 40 1 7.8437 -1.4806 0.2455 41 1 2.5247 -3.2528 -0.1947 42 1 -0.1239 -1.8365 -0.9809 43 1 0.6711 -3.2500 -1.7999 44 1 0.2744 -4.7072 0.1302 45 1 -1.0961 -3.5618 0.4628 46 1 1.3753 -3.4979 1.9557 47 1 0.3734 -2.0108 1.6661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335437321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:04 Heat of formation + Delta-G solvation = 76.843271 kcal Electronic energy + Delta-G solvation = -27709.188699 eV Core-core repulsion = 24087.893904 eV Total energy + Delta-G solvation = -3621.294795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.62014 -39.04758 -38.29079 -36.51815 -33.72781 -32.86851 -31.16464 -30.03206 -29.74113 -27.34138 -26.36215 -25.73557 -25.10153 -23.65254 -22.70767 -21.78721 -20.53618 -19.71814 -19.30698 -18.25820 -17.24852 -16.22233 -15.79735 -15.58215 -15.40874 -15.07940 -14.66513 -14.50101 -14.42144 -13.61263 -13.52510 -13.41319 -13.27310 -13.08662 -12.93272 -12.66893 -12.48523 -12.36527 -12.29126 -12.05756 -11.82885 -11.44452 -11.20608 -10.76054 -10.64797 -10.60159 -10.54712 -10.42075 -10.38669 -10.14326 -9.93920 -9.74870 -9.26334 -8.52286 -8.36715 -8.11913 -7.92299 -6.58100 -5.79139 -3.25875 2.04924 2.59370 2.82894 3.38294 3.43819 3.45183 3.61450 3.88975 4.44255 4.46817 4.49764 4.54647 4.55876 4.81593 4.92654 4.94780 5.07018 5.14109 5.33306 5.37817 5.44963 5.49413 5.52529 5.59956 5.72147 5.75692 5.89845 5.91786 5.97246 6.03615 6.05821 6.11802 6.23293 6.32082 6.34503 6.40471 6.53455 6.58614 6.89741 6.92301 7.07437 7.19808 7.30782 7.39307 7.55231 7.78685 8.16588 8.44806 8.84568 9.19531 9.81654 10.41487 11.28276 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.003561 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.342723 B = 7860.545576 C = 8124.769505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.444 5.444 3 C -0.021 4.021 4 C -0.163 4.163 5 C -0.213 4.213 6 C 0.587 3.413 7 O -0.568 6.568 8 N -0.590 5.590 9 C 0.076 3.924 10 C 0.162 3.838 11 N -0.591 5.591 12 C -0.257 4.257 13 H 0.065 0.935 14 C 0.006 3.994 15 N -0.901 5.901 16 Si 0.903 3.097 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.133 3.867 21 C 0.096 3.904 22 C 0.102 3.898 23 C -0.048 4.048 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.139 4.139 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.165 0.835 31 H 0.146 0.854 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.022 0.978 35 H 0.092 0.908 36 H 0.255 0.745 37 H 0.022 0.978 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.125 0.875 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.370 1.502 -11.236 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.120 5.120 3 C -0.147 4.147 4 C -0.187 4.187 5 C -0.223 4.223 6 C 0.377 3.623 7 O -0.450 6.450 8 N -0.321 5.321 9 C -0.048 4.048 10 C 0.036 3.964 11 N -0.314 5.314 12 C -0.386 4.386 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.545 5.545 16 Si 0.733 3.267 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.208 1.208 20 C 0.006 3.994 21 C -0.028 4.028 22 C -0.013 4.013 23 C -0.067 4.067 24 C -0.187 4.187 25 C -0.176 4.176 26 C -0.177 4.177 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.182 0.818 31 H 0.164 0.836 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.040 0.960 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.143 0.857 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.737 1.078 -11.379 20.267 hybrid contribution 0.780 0.761 0.634 1.260 sum -15.957 1.839 -10.745 19.325 Atomic orbital electron populations 1.22341 0.78038 1.04633 1.03091 1.43292 1.06046 1.05392 1.57287 1.21632 0.90506 0.90869 1.11652 1.22039 0.96025 0.93057 1.07619 1.20148 0.91947 0.93537 1.16640 1.17450 0.81955 0.84141 0.78788 1.90671 1.82446 1.27299 1.44535 1.47851 1.13007 1.29558 1.41661 1.22946 1.01632 0.87083 0.93108 1.21189 0.87961 0.96605 0.90673 1.43958 1.12658 1.26860 1.47920 1.19142 0.86095 1.36650 0.96752 0.91748 1.25123 0.96738 1.01788 0.95635 1.70016 1.22970 1.46033 1.15499 0.86368 0.82140 0.79787 0.78431 1.20935 1.21639 1.20837 1.21285 0.99169 0.90276 0.88704 1.22172 0.85391 0.95346 0.99857 1.19853 0.89188 0.88385 1.03923 1.21342 0.97349 0.90914 0.97046 1.23318 0.96815 1.00337 0.98278 1.22813 0.99283 0.99157 0.96363 1.23072 0.97649 1.00181 0.96773 0.90834 0.89026 0.89873 0.81763 0.83587 0.92413 0.89589 0.95984 0.88961 0.93533 0.95992 0.91713 0.90084 0.92177 0.85665 0.89596 0.90945 0.89716 0.91393 0.90588 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 9.00 59.85 0.54 0.97 16 2 N -0.44 -5.14 3.09 -119.88 -0.37 -5.51 16 3 C -0.02 -0.24 11.34 -16.82 -0.19 -0.43 16 4 C -0.16 -2.34 8.67 -37.50 -0.33 -2.67 16 5 C -0.21 -3.63 5.35 -103.35 -0.55 -4.18 16 6 C 0.59 11.67 7.43 -12.59 -0.09 11.57 16 7 O -0.57 -12.37 15.04 5.25 0.08 -12.29 16 8 N -0.59 -11.81 2.94 -173.54 -0.51 -12.32 16 9 C 0.08 1.50 5.80 -3.36 -0.02 1.48 16 10 C 0.16 3.89 5.50 -3.36 -0.02 3.87 16 11 N -0.59 -15.02 2.95 -171.76 -0.51 -15.52 16 12 C -0.26 -7.02 9.55 -15.06 -0.14 -7.17 16 13 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 14 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 15 N -0.90 -25.96 11.34 55.49 0.63 -25.33 16 16 Si 0.90 21.44 29.58 -169.99 -5.03 16.42 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.13 2.94 6.67 -3.60 -0.02 2.91 16 21 C 0.10 1.91 6.60 -3.60 -0.02 1.89 16 22 C 0.10 1.48 6.10 -81.88 -0.50 0.98 16 23 C -0.05 -0.62 3.97 -90.96 -0.36 -0.98 16 24 C -0.15 -1.46 7.16 -25.91 -0.19 -1.65 16 25 C -0.14 -1.22 8.05 -25.92 -0.21 -1.42 16 26 C -0.14 -1.52 7.16 -25.92 -0.19 -1.71 16 27 H 0.07 0.43 7.43 -51.93 -0.39 0.05 16 28 H 0.09 0.62 4.29 -51.93 -0.22 0.40 16 29 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.15 1.96 7.41 -52.48 -0.39 1.57 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.54 4.56 -51.93 -0.24 1.31 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 1.36 7.94 -51.93 -0.41 0.95 16 39 H 0.08 1.57 6.99 -51.92 -0.36 1.20 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.13 1.99 6.63 -51.93 -0.34 1.64 16 42 H 0.09 0.70 4.27 -51.93 -0.22 0.48 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 0.80 6.22 -51.93 -0.32 0.48 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -32.96 358.94 -9.67 -42.63 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.99 Total: 2.95 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -2.38 Total: 3.56 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.76 Total: -58.68 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.96 -9.67 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335437321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.478 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds