Wall clock time and date at job start Tue Mar 31 2020 11:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36448 * 124.85254 * 2 1 4 4 C 1.34487 * 108.85396 * 179.97438 * 3 2 1 5 5 C 1.46679 * 106.33379 * 0.02562 * 4 3 2 6 6 C 1.47270 * 126.93923 * 179.73346 * 5 4 3 7 7 O 1.21626 * 119.99857 * 219.59926 * 6 5 4 8 8 N 1.34779 * 119.99952 * 39.60322 * 6 5 4 9 9 C 1.46961 * 120.59299 * 4.64203 * 8 6 5 10 10 C 1.53820 * 108.39910 * 124.76048 * 9 8 6 11 11 N 1.46968 * 108.57525 * 49.63607 * 10 9 8 12 12 C 1.36934 * 120.59155 * 124.62715 * 11 10 9 13 13 H 1.07997 * 120.00024 * 211.14932 * 12 11 10 14 14 C 1.38812 * 119.99887 * 31.14801 * 12 11 10 15 15 N 1.31614 * 120.00092 * 16.18541 * 14 12 11 16 16 Si 1.86799 * 119.99816 * 196.17845 * 14 12 11 17 17 H 1.48500 * 109.47129 * 60.00149 * 16 14 12 18 18 H 1.48506 * 109.47107 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47469 * 300.00340 * 16 14 12 20 20 C 1.46969 * 118.81222 * 304.64894 * 11 10 9 21 21 C 1.46961 * 120.59468 * 184.92663 * 8 6 5 22 22 C 1.34662 * 124.84883 * 179.97438 * 2 1 3 23 23 C 1.50697 * 125.80227 * 0.03821 * 22 2 1 24 24 C 1.53790 * 113.61373 * 37.47758 * 23 22 2 25 25 C 1.53782 * 87.07753 * 220.01574 * 24 23 22 26 26 C 1.53777 * 113.61741 * 299.97928 * 23 22 2 27 27 H 1.09003 * 109.47160 * 90.01989 * 1 2 3 28 28 H 1.09002 * 109.47213 * 210.02145 * 1 2 3 29 29 H 1.08999 * 109.47365 * 330.02015 * 1 2 3 30 30 H 1.08002 * 125.56841 * 0.02562 * 3 2 1 31 31 H 1.08004 * 126.82767 * 179.97438 * 4 3 2 32 32 H 1.09004 * 109.61372 * 244.54422 * 9 8 6 33 33 H 1.08996 * 109.61159 * 5.05388 * 9 8 6 34 34 H 1.09000 * 109.73730 * 289.85333 * 10 9 8 35 35 H 1.09000 * 109.53124 * 169.29899 * 10 9 8 36 36 H 0.97002 * 119.99935 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.60611 * 295.48041 * 20 11 10 38 38 H 1.08999 * 109.74490 * 175.05705 * 20 11 10 39 39 H 1.09008 * 109.60923 * 354.94494 * 21 8 6 40 40 H 1.08993 * 109.61158 * 115.45517 * 21 8 6 41 41 H 1.09003 * 112.84817 * 168.77907 * 23 22 2 42 42 H 1.08992 * 113.61064 * 334.56302 * 24 23 22 43 43 H 1.08996 * 113.61148 * 105.46911 * 24 23 22 44 44 H 1.08991 * 113.61528 * 270.87839 * 25 24 23 45 45 H 1.08999 * 113.61013 * 139.98137 * 25 24 23 46 46 H 1.09004 * 113.61547 * 254.52833 * 26 23 22 47 47 H 1.09003 * 113.61578 * 25.34746 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5461 -0.7177 0.0003 6 6 4.7283 -1.5958 -0.0047 7 8 4.7298 -2.6099 -0.6763 8 7 5.8087 -1.2758 0.7349 9 6 5.7843 -0.1096 1.6289 10 6 6.1539 -0.5771 3.0469 11 7 7.3794 -1.3845 2.9692 12 6 8.4773 -1.0588 3.7199 13 1 9.4685 -1.2730 3.3483 14 6 8.3163 -0.4533 4.9586 15 7 7.1434 -0.4771 5.5552 16 14 9.7645 0.3950 5.7787 17 1 10.2560 1.4906 4.9050 18 1 9.3342 0.9574 7.0841 19 1 10.8546 -0.5890 5.9994 20 6 7.4056 -2.5475 2.0709 21 6 7.0342 -2.0832 0.6572 22 6 2.2345 -1.1051 0.0005 23 6 1.7352 -2.5270 0.0003 24 6 0.4764 -2.7378 -0.8577 25 6 -0.0312 -3.6686 0.2561 26 6 0.8661 -2.8749 1.2203 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8901 0.5135 30 1 1.8828 2.1373 0.0004 31 1 4.3981 1.4017 0.0003 32 1 6.5069 0.6303 1.2848 33 1 4.7853 0.3262 1.6345 34 1 5.3442 -1.1798 3.4585 35 1 6.3273 0.2908 3.6831 36 1 7.0310 -0.0542 6.4210 37 1 6.6852 -3.2903 2.4132 38 1 8.4046 -2.9836 2.0621 39 1 6.8608 -2.9511 0.0209 40 1 7.8437 -1.4806 0.2455 41 1 2.5247 -3.2528 -0.1947 42 1 -0.1239 -1.8365 -0.9809 43 1 0.6711 -3.2500 -1.7999 44 1 0.2744 -4.7072 0.1302 45 1 -1.0961 -3.5618 0.4628 46 1 1.3753 -3.4979 1.9557 47 1 0.3734 -2.0108 1.6661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335437321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:03 Heat of formation + Delta-G solvation = 57.964858 kcal Electronic energy + Delta-G solvation = -27710.007328 eV Core-core repulsion = 24087.893904 eV Total energy + Delta-G solvation = -3622.113424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62238 -40.59266 -39.18508 -38.29677 -35.55147 -33.95726 -32.98135 -31.81439 -30.73644 -28.93256 -27.54150 -26.58310 -26.11530 -25.37807 -24.42823 -23.21512 -21.75383 -21.05126 -20.35266 -19.61520 -18.75611 -17.74740 -17.31751 -16.67787 -16.59217 -16.37739 -16.27496 -15.85773 -15.48914 -15.38551 -15.22550 -15.00615 -14.58036 -14.26651 -14.11166 -13.87267 -13.53737 -13.40567 -13.27387 -13.16978 -13.09891 -13.01108 -12.68083 -12.59648 -12.50375 -12.24099 -12.03462 -11.87396 -11.65987 -11.42881 -11.38717 -11.23654 -10.82040 -10.57830 -9.79188 -9.39675 -9.04460 -8.61455 -7.88034 -5.40096 0.87479 1.49493 1.51294 1.54646 1.58587 1.87954 2.20535 2.42627 2.54183 3.26582 3.57811 3.59658 3.62150 3.74203 3.84299 3.95341 4.03091 4.14310 4.23942 4.25589 4.31679 4.42153 4.43006 4.57373 4.60708 4.61987 4.68073 4.71277 4.77891 4.81356 4.82362 4.84529 5.01719 5.03949 5.05587 5.06320 5.11332 5.21245 5.29743 5.48885 5.52177 5.62548 5.69089 5.82991 6.16621 6.36612 6.43119 6.60262 7.10725 7.29649 7.77238 8.34434 9.17127 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.003561 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.342723 B = 7860.545576 C = 8124.769505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.436 5.436 3 C 0.001 3.999 4 C -0.189 4.189 5 C -0.262 4.262 6 C 0.583 3.417 7 O -0.597 6.597 8 N -0.598 5.598 9 C 0.097 3.903 10 C 0.172 3.828 11 N -0.607 5.607 12 C -0.272 4.272 13 H 0.068 0.932 14 C -0.042 4.042 15 N -0.933 5.933 16 Si 0.972 3.028 17 H -0.274 1.274 18 H -0.293 1.293 19 H -0.277 1.277 20 C 0.134 3.866 21 C 0.106 3.894 22 C 0.101 3.899 23 C -0.066 4.066 24 C -0.138 4.138 25 C -0.125 4.125 26 C -0.138 4.138 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.208 0.792 31 H 0.149 0.851 32 H 0.066 0.934 33 H 0.106 0.894 34 H -0.009 1.009 35 H 0.070 0.930 36 H 0.252 0.748 37 H 0.003 0.997 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.055 0.945 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.448 3.338 -12.078 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.111 5.111 3 C -0.126 4.126 4 C -0.213 4.213 5 C -0.272 4.272 6 C 0.375 3.625 7 O -0.481 6.481 8 N -0.328 5.328 9 C -0.026 4.026 10 C 0.045 3.955 11 N -0.331 5.331 12 C -0.402 4.402 13 H 0.086 0.914 14 C -0.238 4.238 15 N -0.578 5.578 16 Si 0.799 3.201 17 H -0.200 1.200 18 H -0.219 1.219 19 H -0.203 1.203 20 C 0.008 3.992 21 C -0.019 4.019 22 C -0.016 4.016 23 C -0.085 4.085 24 C -0.175 4.175 25 C -0.162 4.162 26 C -0.176 4.176 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.130 0.870 30 H 0.224 0.776 31 H 0.167 0.833 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.009 0.991 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.021 0.979 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.115 0.885 46 H 0.074 0.926 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.833 2.916 -12.246 22.652 hybrid contribution 1.356 0.130 0.881 1.622 sum -17.476 3.046 -11.365 21.068 Atomic orbital electron populations 1.22736 0.74949 1.06402 1.05033 1.43588 1.07846 1.04307 1.55354 1.22230 0.89527 0.92406 1.08445 1.22153 0.97760 0.91685 1.09712 1.20167 0.91838 0.94758 1.20471 1.17986 0.82488 0.84083 0.77921 1.90633 1.82968 1.28760 1.45698 1.47926 1.13271 1.29671 1.41966 1.22687 1.02897 0.86897 0.90161 1.20987 0.86625 0.94992 0.92849 1.44217 1.12590 1.28018 1.48246 1.19489 0.86831 1.36687 0.97204 0.91394 1.25900 0.99296 1.02440 0.96186 1.70176 1.25005 1.46927 1.15731 0.85293 0.78938 0.78725 0.77134 1.20008 1.21883 1.20262 1.21336 0.99281 0.89171 0.89453 1.22012 0.85970 0.95767 0.98102 1.20003 0.89018 0.89733 1.02889 1.21350 0.97774 0.89555 0.99822 1.23331 0.94869 1.01491 0.97840 1.22763 1.00429 0.98481 0.94556 1.23100 0.97662 1.00836 0.95988 0.88708 0.88487 0.87047 0.77556 0.83347 0.91615 0.87603 0.99121 0.91161 0.93857 0.97855 0.90708 0.89774 0.91080 0.89565 0.87201 0.91329 0.90102 0.88483 0.92603 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.47 9.00 127.77 1.15 1.62 16 2 N -0.44 -8.81 3.09 -533.19 -1.65 -10.45 16 3 C 0.00 0.01 11.34 83.12 0.94 0.96 16 4 C -0.19 -5.22 8.67 23.62 0.20 -5.02 16 5 C -0.26 -9.03 5.35 -19.04 -0.10 -9.13 16 6 C 0.58 24.09 7.43 86.62 0.64 24.73 16 7 O -0.60 -27.35 15.04 -4.11 -0.06 -27.41 16 8 N -0.60 -24.66 2.94 -821.20 -2.42 -27.07 16 9 C 0.10 3.91 5.80 86.57 0.50 4.41 16 10 C 0.17 8.57 5.50 86.57 0.48 9.05 16 11 N -0.61 -31.77 2.95 -697.33 -2.06 -33.83 16 12 C -0.27 -15.12 9.55 84.03 0.80 -14.31 16 13 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 14 C -0.04 -2.34 4.91 84.86 0.42 -1.92 16 15 N -0.93 -55.09 11.34 21.65 0.25 -54.84 16 16 Si 0.97 44.36 29.58 68.60 2.03 46.39 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 C 0.13 6.14 6.67 86.41 0.58 6.72 16 21 C 0.11 4.30 6.60 86.41 0.57 4.87 16 22 C 0.10 2.88 6.10 41.78 0.25 3.14 16 23 C -0.07 -1.73 3.97 -11.01 -0.04 -1.77 16 24 C -0.14 -2.43 7.16 31.12 0.22 -2.20 16 25 C -0.13 -1.94 8.05 31.12 0.25 -1.69 16 26 C -0.14 -2.93 7.16 31.12 0.22 -2.71 16 27 H 0.09 0.61 7.43 -2.39 -0.02 0.59 16 28 H 0.10 0.89 4.29 -2.39 -0.01 0.88 16 29 H 0.11 0.55 8.13 -2.39 -0.02 0.53 16 30 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.15 3.86 7.41 -2.91 -0.02 3.84 16 32 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 33 H 0.11 3.85 4.56 -2.39 -0.01 3.83 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H 0.07 3.80 6.18 -2.39 -0.01 3.78 16 36 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 37 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.07 3.21 7.94 -2.39 -0.02 3.19 16 39 H 0.08 3.37 6.99 -2.38 -0.02 3.35 16 40 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.09 2.95 6.63 -2.39 -0.02 2.93 16 42 H 0.11 1.38 4.27 -2.39 -0.01 1.37 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.09 1.69 6.22 -2.39 -0.01 1.68 16 Total: -1.00 -75.04 358.94 4.16 -70.88 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.98 Total: 19.60 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 7.09 Total: 16.74 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -5.87 Total: -126.20 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -75.04 4.16 -70.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335437321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.847 kcal (2) G-P(sol) polarization free energy of solvation -75.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds