Wall clock time and date at job start Tue Mar 31 2020 11:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46889 * 111.00258 * 2 1 4 4 C 1.50705 * 109.46823 * 66.04896 * 3 2 1 5 5 O 1.21290 * 120.00276 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99911 * 179.97438 * 4 3 2 7 7 C 1.37101 * 119.99896 * 179.97438 * 6 4 3 8 8 H 1.08003 * 119.99846 * 0.02562 * 7 6 4 9 9 C 1.38950 * 119.99853 * 179.97438 * 7 6 4 10 10 N 1.31414 * 120.00158 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99843 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47116 * 90.00433 * 11 9 7 13 13 H 1.48501 * 109.46916 * 210.00177 * 11 9 7 14 14 H 1.48504 * 109.47174 * 330.00352 * 11 9 7 15 15 C 1.46910 * 110.99483 * 236.04785 * 2 1 3 16 16 C 1.53116 * 109.52362 * 298.95334 * 15 2 1 17 17 C 1.53035 * 109.27620 * 177.56337 * 16 15 2 18 18 N 1.46855 * 109.52301 * 300.82119 * 17 16 15 19 19 C 1.39676 * 110.99902 * 185.83835 * 18 17 16 20 20 C 1.38906 * 120.07135 * 179.97438 * 19 18 17 21 21 C 1.38111 * 119.92343 * 180.02562 * 20 19 18 22 22 C 1.38288 * 120.07382 * 0.28047 * 21 20 19 23 23 C 1.38286 * 120.14755 * 359.44532 * 22 21 20 24 24 C 1.38112 * 120.07587 * 0.55318 * 23 22 21 25 25 C 1.46849 * 111.19593 * 61.74571 * 18 17 16 26 26 C 1.53041 * 109.52056 * 298.25550 * 25 18 17 27 27 H 1.08991 * 109.47498 * 183.94777 * 1 2 3 28 28 H 1.08996 * 109.46705 * 303.95370 * 1 2 3 29 29 H 1.09005 * 109.46717 * 63.94720 * 1 2 3 30 30 H 1.09000 * 109.47220 * 186.04312 * 3 2 1 31 31 H 1.08996 * 109.48017 * 306.04974 * 3 2 1 32 32 H 0.97000 * 119.99994 * 0.02562 * 6 4 3 33 33 H 0.96997 * 119.99745 * 180.02562 * 10 9 7 34 34 H 1.09007 * 109.56872 * 178.79881 * 15 2 1 35 35 H 1.09005 * 109.50279 * 57.62392 * 16 15 2 36 36 H 1.09001 * 109.54124 * 297.52287 * 16 15 2 37 37 H 1.09008 * 109.46354 * 180.80902 * 17 16 15 38 38 H 1.08993 * 109.45683 * 60.83204 * 17 16 15 39 39 H 1.07999 * 120.03932 * 0.04675 * 20 19 18 40 40 H 1.08002 * 119.96028 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.92357 * 179.69823 * 22 21 20 42 42 H 1.08002 * 119.96005 * 180.25011 * 23 22 21 43 43 H 1.07998 * 120.03717 * 179.70130 * 24 23 22 44 44 H 1.08995 * 109.46185 * 58.27117 * 25 18 17 45 45 H 1.08997 * 109.45953 * 178.24444 * 25 18 17 46 46 H 1.09000 * 109.50381 * 299.23776 * 26 25 18 47 47 H 1.09001 * 109.50327 * 179.12024 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0047 1.4454 2.1409 6 7 2.0191 3.3197 1.5239 7 6 1.6925 3.9345 2.7050 8 1 1.1295 3.3988 3.4550 9 6 2.0868 5.2465 2.9375 10 7 2.7723 5.8981 2.0251 11 14 1.6425 6.0839 4.5470 12 1 2.7187 5.8463 5.5423 13 1 1.4915 7.5437 4.3202 14 1 0.3640 5.5275 5.0581 15 6 1.9954 -0.7660 -1.1377 16 6 1.5265 -2.2201 -1.0364 17 6 2.0270 -2.9984 -2.2553 18 7 1.5038 -2.3808 -3.4806 19 6 1.8326 -3.1421 -4.6046 20 6 1.4286 -2.7287 -5.8677 21 6 1.7550 -3.4841 -6.9769 22 6 2.4780 -4.6538 -6.8305 23 6 2.8866 -5.0652 -5.5751 24 6 2.5637 -4.3145 -4.4616 25 6 1.9795 -0.9989 -3.6235 26 6 1.4776 -0.1609 -2.4454 27 1 -0.3634 -1.0251 0.0707 28 1 -0.3632 0.5740 0.8524 29 1 -0.3633 0.4514 -0.9233 30 1 3.0798 1.3442 -0.1082 31 1 1.5612 1.9274 -0.8308 32 1 2.5244 3.8009 0.8501 33 1 3.0478 6.8138 2.1876 34 1 3.0849 -0.7331 -1.1273 35 1 0.4372 -2.2500 -1.0076 36 1 1.9270 -2.6699 -0.1279 37 1 1.6827 -4.0308 -2.1934 38 1 3.1165 -2.9795 -2.2758 39 1 0.8603 -1.8175 -5.9823 40 1 1.4409 -3.1635 -7.9593 41 1 2.7277 -5.2451 -7.6991 42 1 3.4546 -5.9771 -5.4646 43 1 2.8789 -4.6389 -3.4809 44 1 3.0693 -0.9896 -3.6376 45 1 1.6007 -0.5790 -4.5553 46 1 0.3876 -0.1584 -2.4388 47 1 1.8438 0.8611 -2.5436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343772478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:40 Heat of formation + Delta-G solvation = 12.292628 kcal Electronic energy + Delta-G solvation = -26278.411934 eV Core-core repulsion = 22654.318013 eV Total energy + Delta-G solvation = -3624.093921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70117 -39.05480 -37.90558 -36.17466 -33.89786 -32.25638 -31.83328 -31.21823 -30.61089 -28.90367 -27.78195 -25.66134 -24.59862 -24.00964 -22.72890 -21.84579 -21.11303 -19.38607 -19.04385 -17.96061 -17.80777 -16.29771 -16.05307 -15.74351 -15.29839 -15.05726 -14.64379 -14.62904 -14.54547 -14.12035 -14.04017 -13.74489 -13.58001 -13.56690 -13.11178 -12.97474 -12.68752 -12.23126 -12.12694 -11.68758 -11.62011 -11.48873 -11.37511 -11.33917 -11.14459 -11.08727 -10.83530 -10.67843 -10.38751 -10.37596 -10.19902 -9.90176 -9.45762 -9.18958 -8.40901 -8.04682 -7.95331 -7.76189 -6.40347 -3.80945 1.14120 1.15795 3.18668 3.27114 3.32921 3.36179 3.66784 3.92496 3.98840 4.25074 4.54447 4.60211 4.71517 4.74912 4.87653 4.93109 4.97743 5.10942 5.13042 5.17234 5.25919 5.28857 5.32565 5.39957 5.40832 5.53091 5.57803 5.63013 5.73944 5.79921 5.84516 5.89433 5.94590 6.01603 6.09393 6.16106 6.16940 6.28282 6.31221 6.31315 6.53661 6.63927 6.80382 7.08380 7.33357 7.45100 7.56643 8.08306 8.63823 9.19904 9.56471 10.08631 10.77485 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037588 B = 0.002181 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.745193 B =12836.516391 C =13199.909306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.510 5.510 3 C 0.045 3.955 4 C 0.445 3.555 5 O -0.577 6.577 6 N -0.566 5.566 7 C -0.297 4.297 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.083 3.917 16 C -0.110 4.110 17 C 0.054 3.946 18 N -0.489 5.489 19 C 0.118 3.882 20 C -0.144 4.144 21 C -0.096 4.096 22 C -0.153 4.153 23 C -0.094 4.094 24 C -0.174 4.174 25 C 0.066 3.934 26 C -0.157 4.157 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.018 0.982 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.392 0.608 33 H 0.271 0.729 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 -17.543 -17.932 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.232 5.232 3 C -0.086 4.086 4 C 0.230 3.770 5 O -0.461 6.461 6 N -0.202 5.202 7 C -0.427 4.427 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.026 4.026 16 C -0.148 4.148 17 C -0.074 4.074 18 N -0.204 5.204 19 C 0.020 3.980 20 C -0.164 4.164 21 C -0.114 4.114 22 C -0.172 4.172 23 C -0.113 4.113 24 C -0.195 4.195 25 C -0.059 4.059 26 C -0.196 4.196 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.037 0.963 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.145 0.855 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.081 -17.877 -16.769 24.511 hybrid contribution 0.646 1.184 -0.538 1.452 sum 0.727 -16.693 -17.308 24.057 Atomic orbital electron populations 1.22604 0.86970 1.02064 1.01381 1.61818 1.08765 1.12663 1.39914 1.21862 1.00530 0.89227 0.97020 1.19763 0.85365 0.82902 0.88972 1.90483 1.43830 1.64649 1.47143 1.41873 1.49508 1.10812 1.18048 1.19694 1.32809 0.95434 0.94760 0.87935 1.25258 0.96898 0.96670 0.99215 1.69613 1.38135 1.12283 1.34392 0.85861 0.79084 0.78033 0.81327 1.20423 1.20977 1.19442 1.21834 0.99353 0.93569 0.87874 1.21687 1.02354 0.94114 0.96662 1.22297 0.97798 0.98740 0.88516 1.59007 1.57014 1.03015 1.01378 1.19025 0.94117 0.94222 0.90668 1.20819 1.02835 1.01592 0.91145 1.21015 0.97552 0.94628 0.98246 1.21053 1.01207 0.97604 0.97323 1.21010 0.98750 0.99067 0.92452 1.21353 1.01061 0.97451 0.99619 1.22151 0.97994 0.86177 0.99616 1.22404 1.02863 0.99213 0.95168 0.91944 0.88814 0.96341 0.89628 0.93403 0.77539 0.91922 0.90371 0.90536 0.90050 0.89870 0.93547 0.85844 0.86053 0.86375 0.86199 0.85519 0.93785 0.90211 0.90252 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.46 60.07 0.51 0.79 16 2 N -0.51 -8.37 4.49 -236.18 -1.06 -9.43 16 3 C 0.04 0.80 4.90 -4.98 -0.02 0.77 16 4 C 0.44 10.48 7.48 -10.98 -0.08 10.40 16 5 O -0.58 -15.52 13.91 5.55 0.08 -15.44 16 6 N -0.57 -14.35 5.29 -10.96 -0.06 -14.40 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 10 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 11 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 C 0.08 1.05 2.29 -67.59 -0.15 0.89 16 16 C -0.11 -1.23 5.24 -26.65 -0.14 -1.37 16 17 C 0.05 0.52 4.15 -3.83 -0.02 0.50 16 18 N -0.49 -5.09 4.70 -171.15 -0.80 -5.89 16 19 C 0.12 1.20 5.64 -83.79 -0.47 0.73 16 20 C -0.14 -1.36 9.16 -39.38 -0.36 -1.72 16 21 C -0.10 -0.80 10.04 -39.61 -0.40 -1.19 16 22 C -0.15 -1.22 10.04 -39.55 -0.40 -1.62 16 23 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16 24 C -0.17 -1.62 8.82 -39.38 -0.35 -1.96 16 25 C 0.07 0.67 5.26 -3.83 -0.02 0.65 16 26 C -0.16 -1.78 4.69 -26.65 -0.12 -1.90 16 27 H 0.06 0.91 6.28 -51.93 -0.33 0.59 16 28 H 0.09 1.87 5.82 -51.93 -0.30 1.57 16 29 H 0.02 0.27 6.23 -51.93 -0.32 -0.05 16 30 H 0.09 1.39 8.00 -51.93 -0.42 0.98 16 31 H 0.05 0.78 7.01 -51.93 -0.36 0.42 16 32 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.08 0.98 8.03 -51.93 -0.42 0.56 16 35 H 0.08 0.91 6.31 -51.93 -0.33 0.59 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.74 6.98 -51.92 -0.36 0.37 16 38 H 0.05 0.43 7.74 -51.93 -0.40 0.03 16 39 H 0.12 1.07 7.15 -52.49 -0.38 0.70 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.13 1.03 5.81 -52.49 -0.30 0.73 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.74 6.70 -51.93 -0.35 0.39 16 46 H 0.08 0.97 6.26 -51.93 -0.33 0.65 16 47 H 0.07 0.84 6.90 -51.93 -0.36 0.48 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -31.01 362.73 -10.24 -41.26 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.90 Total: 10.41 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.67 Total: -4.19 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -1.20 Total: -53.60 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.08 Total: -15.44 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.01 -10.24 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343772478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.548 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds