Wall clock time and date at job start Tue Mar 31 2020 11:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46889 * 111.00258 * 2 1 4 4 C 1.50705 * 109.46823 * 66.04896 * 3 2 1 5 5 O 1.21290 * 120.00276 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99911 * 179.97438 * 4 3 2 7 7 C 1.37101 * 119.99896 * 179.97438 * 6 4 3 8 8 H 1.08003 * 119.99846 * 0.02562 * 7 6 4 9 9 C 1.38950 * 119.99853 * 179.97438 * 7 6 4 10 10 N 1.31414 * 120.00158 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99843 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47116 * 90.00433 * 11 9 7 13 13 H 1.48501 * 109.46916 * 210.00177 * 11 9 7 14 14 H 1.48504 * 109.47174 * 330.00352 * 11 9 7 15 15 C 1.46910 * 110.99483 * 236.04785 * 2 1 3 16 16 C 1.53116 * 109.52362 * 298.95334 * 15 2 1 17 17 C 1.53035 * 109.27620 * 177.56337 * 16 15 2 18 18 N 1.46855 * 109.52301 * 300.82119 * 17 16 15 19 19 C 1.39676 * 110.99902 * 185.83835 * 18 17 16 20 20 C 1.38906 * 120.07135 * 179.97438 * 19 18 17 21 21 C 1.38111 * 119.92343 * 180.02562 * 20 19 18 22 22 C 1.38288 * 120.07382 * 0.28047 * 21 20 19 23 23 C 1.38286 * 120.14755 * 359.44532 * 22 21 20 24 24 C 1.38112 * 120.07587 * 0.55318 * 23 22 21 25 25 C 1.46849 * 111.19593 * 61.74571 * 18 17 16 26 26 C 1.53041 * 109.52056 * 298.25550 * 25 18 17 27 27 H 1.08991 * 109.47498 * 183.94777 * 1 2 3 28 28 H 1.08996 * 109.46705 * 303.95370 * 1 2 3 29 29 H 1.09005 * 109.46717 * 63.94720 * 1 2 3 30 30 H 1.09000 * 109.47220 * 186.04312 * 3 2 1 31 31 H 1.08996 * 109.48017 * 306.04974 * 3 2 1 32 32 H 0.97000 * 119.99994 * 0.02562 * 6 4 3 33 33 H 0.96997 * 119.99745 * 180.02562 * 10 9 7 34 34 H 1.09007 * 109.56872 * 178.79881 * 15 2 1 35 35 H 1.09005 * 109.50279 * 57.62392 * 16 15 2 36 36 H 1.09001 * 109.54124 * 297.52287 * 16 15 2 37 37 H 1.09008 * 109.46354 * 180.80902 * 17 16 15 38 38 H 1.08993 * 109.45683 * 60.83204 * 17 16 15 39 39 H 1.07999 * 120.03932 * 0.04675 * 20 19 18 40 40 H 1.08002 * 119.96028 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.92357 * 179.69823 * 22 21 20 42 42 H 1.08002 * 119.96005 * 180.25011 * 23 22 21 43 43 H 1.07998 * 120.03717 * 179.70130 * 24 23 22 44 44 H 1.08995 * 109.46185 * 58.27117 * 25 18 17 45 45 H 1.08997 * 109.45953 * 178.24444 * 25 18 17 46 46 H 1.09000 * 109.50381 * 299.23776 * 26 25 18 47 47 H 1.09001 * 109.50327 * 179.12024 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0047 1.4454 2.1409 6 7 2.0191 3.3197 1.5239 7 6 1.6925 3.9345 2.7050 8 1 1.1295 3.3988 3.4550 9 6 2.0868 5.2465 2.9375 10 7 2.7723 5.8981 2.0251 11 14 1.6425 6.0839 4.5470 12 1 2.7187 5.8463 5.5423 13 1 1.4915 7.5437 4.3202 14 1 0.3640 5.5275 5.0581 15 6 1.9954 -0.7660 -1.1377 16 6 1.5265 -2.2201 -1.0364 17 6 2.0270 -2.9984 -2.2553 18 7 1.5038 -2.3808 -3.4806 19 6 1.8326 -3.1421 -4.6046 20 6 1.4286 -2.7287 -5.8677 21 6 1.7550 -3.4841 -6.9769 22 6 2.4780 -4.6538 -6.8305 23 6 2.8866 -5.0652 -5.5751 24 6 2.5637 -4.3145 -4.4616 25 6 1.9795 -0.9989 -3.6235 26 6 1.4776 -0.1609 -2.4454 27 1 -0.3634 -1.0251 0.0707 28 1 -0.3632 0.5740 0.8524 29 1 -0.3633 0.4514 -0.9233 30 1 3.0798 1.3442 -0.1082 31 1 1.5612 1.9274 -0.8308 32 1 2.5244 3.8009 0.8501 33 1 3.0478 6.8138 2.1876 34 1 3.0849 -0.7331 -1.1273 35 1 0.4372 -2.2500 -1.0076 36 1 1.9270 -2.6699 -0.1279 37 1 1.6827 -4.0308 -2.1934 38 1 3.1165 -2.9795 -2.2758 39 1 0.8603 -1.8175 -5.9823 40 1 1.4409 -3.1635 -7.9593 41 1 2.7277 -5.2451 -7.6991 42 1 3.4546 -5.9771 -5.4646 43 1 2.8789 -4.6389 -3.4809 44 1 3.0693 -0.9896 -3.6376 45 1 1.6007 -0.5790 -4.5553 46 1 0.3876 -0.1584 -2.4388 47 1 1.8438 0.8611 -2.5436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343772478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:40 Heat of formation + Delta-G solvation = -8.132556 kcal Electronic energy + Delta-G solvation = -26279.297636 eV Core-core repulsion = 22654.318013 eV Total energy + Delta-G solvation = -3624.979623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51698 -40.40579 -39.21579 -37.26516 -35.88215 -33.35577 -33.15249 -32.57471 -31.33909 -29.83029 -29.14928 -27.11327 -26.05415 -24.89170 -23.75899 -22.57374 -21.95500 -20.92326 -20.29298 -19.80941 -18.67368 -17.86595 -16.78037 -16.67443 -16.62968 -16.34142 -16.26645 -15.71861 -15.70782 -15.34106 -15.08736 -14.95443 -14.73299 -14.43321 -14.18494 -14.01844 -13.82364 -13.53698 -13.45687 -13.02164 -12.96194 -12.70913 -12.60423 -12.41568 -12.30658 -12.14377 -12.11735 -12.05370 -12.00148 -11.58855 -11.45840 -11.31076 -10.60923 -10.26344 -9.98918 -9.82099 -9.10282 -8.74314 -8.45694 -5.94070 0.49527 0.52300 1.38044 1.41530 1.54238 2.06827 2.28703 2.65814 2.76503 3.00205 3.21093 3.42304 3.73583 3.81162 3.91621 4.07498 4.12438 4.15893 4.25335 4.27889 4.33557 4.36074 4.44882 4.48713 4.54160 4.60634 4.63022 4.65670 4.66576 4.72087 4.79985 4.82825 4.90932 5.04845 5.13104 5.16995 5.24560 5.35193 5.40430 5.42301 5.55521 5.69640 5.88755 5.92474 6.07857 6.10070 6.24616 6.40267 6.62166 7.14330 7.57988 8.14213 8.71731 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037588 B = 0.002181 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.745193 B =12836.516391 C =13199.909306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.527 5.527 3 C 0.058 3.942 4 C 0.441 3.559 5 O -0.614 6.614 6 N -0.576 5.576 7 C -0.330 4.330 8 H 0.078 0.922 9 C -0.015 4.015 10 N -0.921 5.921 11 Si 0.992 3.008 12 H -0.271 1.271 13 H -0.271 1.271 14 H -0.273 1.273 15 C 0.085 3.915 16 C -0.104 4.104 17 C 0.060 3.940 18 N -0.498 5.498 19 C 0.100 3.900 20 C -0.157 4.157 21 C -0.101 4.101 22 C -0.157 4.157 23 C -0.101 4.101 24 C -0.185 4.185 25 C 0.072 3.928 26 C -0.149 4.149 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.395 0.605 33 H 0.277 0.723 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.126 0.874 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.134 0.866 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -18.311 -19.499 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.250 5.250 3 C -0.073 4.073 4 C 0.229 3.771 5 O -0.500 6.500 6 N -0.213 5.213 7 C -0.460 4.460 8 H 0.096 0.904 9 C -0.214 4.214 10 N -0.562 5.562 11 Si 0.816 3.184 12 H -0.197 1.197 13 H -0.196 1.196 14 H -0.198 1.198 15 C -0.023 4.023 16 C -0.142 4.142 17 C -0.067 4.067 18 N -0.213 5.213 19 C 0.002 3.998 20 C -0.177 4.177 21 C -0.120 4.120 22 C -0.176 4.176 23 C -0.119 4.119 24 C -0.206 4.206 25 C -0.054 4.054 26 C -0.188 4.188 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.229 0.771 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.144 0.856 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.088 0.912 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.806 -18.656 -18.371 26.195 hybrid contribution 0.424 1.328 -0.120 1.399 sum 1.230 -17.328 -18.491 25.371 Atomic orbital electron populations 1.22434 0.87240 1.02349 1.00143 1.61772 1.08727 1.12005 1.42473 1.21715 1.01835 0.89875 0.93841 1.20802 0.83654 0.82208 0.90447 1.90462 1.45083 1.65374 1.49078 1.41942 1.50124 1.11613 1.17635 1.19644 1.34267 0.96394 0.95706 0.90367 1.26033 0.96362 0.96653 1.02379 1.69673 1.38173 1.12706 1.35666 0.84935 0.78625 0.77371 0.77445 1.19684 1.19560 1.19816 1.21900 0.99535 0.93775 0.87109 1.21623 1.01769 0.93363 0.97488 1.22238 0.98080 0.98788 0.87595 1.59018 1.57450 1.03129 1.01706 1.19164 0.95108 0.94777 0.90754 1.20982 1.03233 1.02086 0.91420 1.21304 0.97257 0.94613 0.98821 1.21387 1.00533 0.97591 0.98056 1.21316 0.98642 0.99639 0.92326 1.21536 1.01171 0.97401 1.00447 1.22091 0.98048 0.86088 0.99201 1.22300 1.02162 0.99460 0.94926 0.90490 0.92892 0.94993 0.87601 0.91501 0.77078 0.91358 0.89798 0.91364 0.90286 0.88998 0.92917 0.85649 0.84192 0.84303 0.84283 0.84803 0.93561 0.89456 0.91158 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 8.46 127.69 1.08 1.93 16 2 N -0.53 -17.00 4.49 -901.15 -4.05 -21.05 16 3 C 0.06 2.04 4.90 85.56 0.42 2.46 16 4 C 0.44 21.22 7.48 87.66 0.66 21.87 16 5 O -0.61 -34.17 13.91 -3.06 -0.04 -34.21 16 6 N -0.58 -29.80 5.29 -306.97 -1.62 -31.43 16 7 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 10 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 11 Si 0.99 43.31 29.55 68.60 2.03 45.33 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 13 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 C 0.09 2.03 2.29 44.99 0.10 2.13 16 16 C -0.10 -2.21 5.24 30.64 0.16 -2.05 16 17 C 0.06 1.06 4.15 86.32 0.36 1.42 16 18 N -0.50 -9.59 4.70 -695.38 -3.27 -12.86 16 19 C 0.10 1.88 5.64 38.21 0.22 2.10 16 20 C -0.16 -2.74 9.16 22.40 0.21 -2.54 16 21 C -0.10 -1.48 10.04 22.25 0.22 -1.26 16 22 C -0.16 -2.14 10.04 22.29 0.22 -1.91 16 23 C -0.10 -1.45 10.04 22.25 0.22 -1.22 16 24 C -0.18 -3.10 8.82 22.40 0.20 -2.91 16 25 C 0.07 1.31 5.26 86.33 0.45 1.77 16 26 C -0.15 -3.14 4.69 30.65 0.14 -2.99 16 27 H 0.08 2.24 6.28 -2.39 -0.02 2.23 16 28 H 0.05 2.18 5.82 -2.39 -0.01 2.17 16 29 H 0.03 0.94 6.23 -2.38 -0.01 0.92 16 30 H 0.11 3.28 8.00 -2.39 -0.02 3.26 16 31 H 0.07 2.10 7.01 -2.39 -0.02 2.08 16 32 H 0.40 19.44 7.90 -92.71 -0.73 18.70 16 33 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 34 H 0.08 1.93 8.03 -2.38 -0.02 1.91 16 35 H 0.07 1.56 6.31 -2.38 -0.02 1.55 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.47 6.98 -2.38 -0.02 1.46 16 38 H 0.05 0.87 7.74 -2.39 -0.02 0.86 16 39 H 0.13 2.03 7.15 -2.91 -0.02 2.01 16 40 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 41 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 42 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.13 1.94 5.81 -2.91 -0.02 1.92 16 44 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.09 1.47 6.70 -2.39 -0.02 1.46 16 46 H 0.07 1.62 6.26 -2.39 -0.01 1.61 16 47 H 0.08 1.57 6.90 -2.39 -0.02 1.55 16 Total: -1.00 -67.41 362.73 -0.47 -67.88 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.25 Total: 35.66 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.94 Total: 0.37 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -8.65 Total: -115.03 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.04 Total: -34.21 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -67.41 -0.47 -67.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343772478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.745 kcal (2) G-P(sol) polarization free energy of solvation -67.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds