Wall clock time and date at job start Tue Mar 31 2020 11:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46495 * 120.00340 * 2 1 4 4 C 1.50700 * 109.47027 * 270.00070 * 3 2 1 5 5 H 1.08002 * 120.00122 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00355 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99795 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 120.00411 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46873 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46980 * 119.99753 * 8 6 4 11 11 H 1.48495 * 109.47242 * 240.00243 * 8 6 4 12 12 C 1.34778 * 119.99573 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99712 * 180.02562 * 12 2 1 14 14 C 1.50694 * 120.00349 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.47197 * 179.97438 * 14 12 2 16 16 N 1.46905 * 109.47187 * 179.97438 * 15 14 12 17 17 C 1.48554 * 111.00266 * 285.42248 * 16 15 14 18 18 C 1.54379 * 104.59553 * 200.95536 * 17 16 15 19 19 C 1.54259 * 105.05870 * 23.85492 * 18 17 16 20 20 C 1.48558 * 110.99786 * 170.00097 * 16 15 14 21 21 H 1.08998 * 110.51604 * 40.21680 * 20 16 15 22 22 C 1.50706 * 110.41313 * 277.81840 * 20 16 15 23 23 C 1.38675 * 120.41529 * 143.37489 * 22 20 16 24 24 C 1.38631 * 118.41792 * 179.97438 * 23 22 20 25 25 C 1.38221 * 119.16077 * 0.25627 * 24 23 22 26 26 N 1.31861 * 120.76518 * 359.45246 * 25 24 23 27 27 C 1.31882 * 121.72456 * 0.58353 * 26 25 24 28 28 H 1.08996 * 109.47287 * 270.00241 * 1 2 3 29 29 H 1.09002 * 109.47082 * 30.00120 * 1 2 3 30 30 H 1.09003 * 109.47060 * 150.00115 * 1 2 3 31 31 H 1.08997 * 109.47006 * 29.99335 * 3 2 1 32 32 H 1.08997 * 109.47507 * 149.99644 * 3 2 1 33 33 H 0.97001 * 119.99893 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.46846 * 60.00159 * 14 12 2 35 35 H 1.08993 * 109.47527 * 300.00197 * 14 12 2 36 36 H 1.08997 * 109.46908 * 60.00292 * 15 14 12 37 37 H 1.08996 * 109.47335 * 299.99853 * 15 14 12 38 38 H 1.09001 * 110.40984 * 82.17794 * 17 16 15 39 39 H 1.09000 * 110.51435 * 319.78843 * 17 16 15 40 40 H 1.08993 * 110.32902 * 264.96023 * 18 17 16 41 41 H 1.09003 * 110.40590 * 142.78902 * 18 17 16 42 42 H 1.08994 * 110.32294 * 241.09867 * 19 18 17 43 43 H 1.09008 * 110.32479 * 118.89038 * 19 18 17 44 44 H 1.07998 * 120.79161 * 359.96013 * 23 22 20 45 45 H 1.08002 * 120.41548 * 179.97438 * 24 23 22 46 46 H 1.08002 * 119.62066 * 179.74470 * 25 24 23 47 47 H 1.07993 * 119.62089 * 179.70697 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.5526 3.6184 -0.6733 8 14 3.4380 3.4166 -3.4341 9 1 2.8609 2.4162 -4.3674 10 1 2.8000 4.7370 -3.6681 11 1 4.9006 3.5254 -3.6668 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6352 0.0005 16 7 1.6450 -4.9075 0.0011 17 6 1.0598 -5.1838 1.3383 18 6 0.8164 -6.7082 1.3490 19 6 1.8044 -7.2791 0.3109 20 6 2.5616 -6.0515 -0.2397 21 1 3.4987 -5.9100 0.2987 22 6 2.8234 -6.2138 -1.7149 23 6 4.0758 -6.6012 -2.1672 24 6 4.2707 -6.7383 -3.5329 25 6 3.2193 -6.4809 -4.3924 26 7 2.0399 -6.1196 -3.9263 27 6 1.8185 -5.9788 -2.6338 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0283 0.5137 32 1 3.1499 1.1383 0.5139 33 1 4.0295 4.4443 -0.8506 34 1 0.7590 -2.5302 -0.8898 35 1 0.7583 -2.5299 0.8902 36 1 3.0061 -3.5775 0.8905 37 1 3.0062 -3.5776 -0.8894 38 1 0.1185 -4.6477 1.4595 39 1 1.7593 -4.9049 2.1264 40 1 -0.2099 -6.9299 1.0566 41 1 1.0254 -7.1195 2.3366 42 1 1.2629 -7.7809 -0.4909 43 1 2.4994 -7.9693 0.7893 44 1 4.8802 -6.7914 -1.4721 45 1 5.2332 -7.0380 -3.9204 46 1 3.3641 -6.5814 -5.4580 47 1 0.8405 -5.6768 -2.2896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346984327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:33 Heat of formation + Delta-G solvation = -18.586186 kcal Electronic energy + Delta-G solvation = -26547.521567 eV Core-core repulsion = 22922.088641 eV Total energy + Delta-G solvation = -3625.432926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42065 -40.68250 -39.51955 -36.63441 -34.86567 -34.43205 -33.65668 -32.55210 -30.90925 -29.31322 -28.84891 -27.29751 -25.59791 -24.59143 -24.25999 -23.44471 -21.59635 -21.33349 -19.88060 -18.72911 -18.17438 -17.93644 -17.31754 -17.15610 -16.77841 -16.63928 -16.26746 -16.10650 -15.39318 -15.11803 -14.88021 -14.71821 -14.39953 -14.14263 -14.06770 -13.92909 -13.77342 -13.46991 -13.41250 -13.24319 -13.12661 -12.90274 -12.69743 -12.67056 -12.40092 -12.23831 -12.18876 -11.99929 -11.85675 -11.69641 -11.39011 -10.70500 -10.67405 -10.62078 -10.39022 -9.83118 -9.55173 -9.43075 -8.25227 -6.40171 0.20874 0.37966 1.33750 1.35949 1.48136 1.82441 2.27059 2.40006 2.84762 2.99665 3.04156 3.51324 3.70840 3.74191 3.84387 3.94914 3.99828 4.07195 4.14407 4.20134 4.20776 4.27506 4.40607 4.44083 4.57514 4.65380 4.69272 4.71245 4.80313 4.87638 4.88624 4.94740 4.98498 4.99790 5.04416 5.10447 5.19996 5.20645 5.24879 5.31878 5.34119 5.54182 5.79211 5.82556 5.91957 5.95394 6.03903 6.67284 6.77855 7.09407 7.25779 7.46848 8.81988 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.003361 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.071670 B = 8328.163230 C = 9804.151072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.269 1.269 10 H -0.266 1.266 11 H -0.280 1.280 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.111 4.111 15 C 0.076 3.924 16 N -0.504 5.504 17 C 0.025 3.975 18 C -0.116 4.116 19 C -0.108 4.108 20 C 0.104 3.896 21 H 0.060 0.940 22 C -0.129 4.129 23 C -0.083 4.083 24 C -0.173 4.173 25 C 0.077 3.923 26 N -0.518 5.518 27 C 0.111 3.889 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.024 0.976 32 H -0.003 1.003 33 H 0.268 0.732 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.033 0.967 37 H 0.049 0.951 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.150 0.850 45 H 0.161 0.839 46 H 0.173 0.827 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 -25.583 2.009 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.582 4.582 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.191 1.191 11 H -0.206 1.206 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.151 4.151 15 C -0.053 4.053 16 N -0.228 5.228 17 C -0.102 4.102 18 C -0.154 4.154 19 C -0.146 4.146 20 C -0.005 4.005 21 H 0.078 0.922 22 C -0.131 4.131 23 C -0.110 4.110 24 C -0.192 4.192 25 C -0.080 4.080 26 N -0.227 5.227 27 C -0.045 4.045 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.042 0.958 32 H 0.015 0.985 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.168 0.832 45 H 0.178 0.822 46 H 0.190 0.810 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.207 -25.181 1.060 26.214 hybrid contribution 1.982 0.896 0.351 2.203 sum -5.225 -24.285 1.411 24.881 Atomic orbital electron populations 1.21943 0.77745 1.03984 1.02691 1.48205 1.08514 1.06398 1.71127 1.18742 0.91088 0.80529 0.95925 1.21735 1.36881 1.06538 0.93075 0.93146 1.25854 0.94859 0.96381 1.02000 1.70055 1.38953 1.14813 1.32937 0.85380 0.77955 0.78469 0.79091 1.19379 1.19101 1.20624 1.21410 0.87803 0.86801 0.75771 1.90627 1.16793 1.88308 1.52757 1.21464 0.98735 0.88704 1.06156 1.21688 0.94342 0.88898 1.00376 1.65240 1.28599 1.00121 1.28870 1.23292 1.00565 0.97686 0.88696 1.22290 1.00313 0.93255 0.99531 1.22319 0.98132 0.95322 0.98818 1.21495 0.95822 0.92333 0.90813 0.92154 1.20793 0.94784 1.00915 0.96630 1.21817 0.96661 0.95791 0.96693 1.22411 1.01577 1.01419 0.93820 1.23215 0.88300 0.94726 1.01729 1.67733 1.24742 1.13270 1.16983 1.22741 1.00073 0.94250 0.87478 0.90845 0.91731 0.88799 0.95768 0.98515 0.92336 0.87207 0.86372 0.94916 0.93245 0.88533 0.93777 0.89956 0.89684 0.91015 0.89663 0.83234 0.82168 0.81031 0.82236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 10.24 127.77 1.31 3.68 16 2 N -0.61 -26.65 2.86 -851.16 -2.43 -29.08 16 3 C 0.26 14.38 5.16 85.63 0.44 14.82 16 4 C -0.54 -32.38 9.39 25.60 0.24 -32.14 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.47 5.46 84.65 0.46 0.94 16 7 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 8 Si 0.97 46.09 29.54 68.60 2.03 48.11 16 9 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 C 0.49 21.01 7.67 87.65 0.67 21.68 16 13 O -0.60 -32.16 15.56 -3.04 -0.05 -32.21 16 14 C -0.11 -3.14 4.37 29.85 0.13 -3.01 16 15 C 0.08 2.15 4.07 86.30 0.35 2.50 16 16 N -0.50 -10.44 4.22 -861.03 -3.64 -14.08 16 17 C 0.02 0.39 5.91 86.45 0.51 0.90 16 18 C -0.12 -1.32 7.00 31.49 0.22 -1.10 16 19 C -0.11 -1.44 6.54 31.49 0.21 -1.23 16 20 C 0.10 1.97 2.47 44.32 0.11 2.08 16 21 H 0.06 1.19 7.93 -2.39 -0.02 1.17 16 22 C -0.13 -2.79 4.52 -19.77 -0.09 -2.88 16 23 C -0.08 -1.61 9.84 22.47 0.22 -1.39 16 24 C -0.17 -3.15 10.11 22.36 0.23 -2.92 16 25 C 0.08 1.64 11.18 84.68 0.95 2.59 16 26 N -0.52 -13.78 10.36 -195.85 -2.03 -15.81 16 27 C 0.11 2.75 10.47 84.67 0.89 3.64 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 30 H 0.09 2.18 6.44 -2.39 -0.02 2.17 16 31 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 32 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.11 2.85 7.40 -2.38 -0.02 2.83 16 35 H 0.12 2.57 7.43 -2.39 -0.02 2.56 16 36 H 0.03 1.00 7.73 -2.39 -0.02 0.98 16 37 H 0.05 1.70 7.74 -2.39 -0.02 1.68 16 38 H 0.10 1.30 7.85 -2.39 -0.02 1.28 16 39 H 0.04 0.73 7.75 -2.39 -0.02 0.72 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 1.02 7.81 -2.39 -0.02 1.00 16 43 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 45 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 46 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 47 H 0.16 3.80 7.66 -2.91 -0.02 3.77 16 Total: -1.00 -79.40 383.71 1.95 -77.45 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.94 Total: 14.31 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.84 Total: 8.15 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -7.81 Total: -115.81 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.05 Total: -32.21 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -79.40 1.95 -77.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346984327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.866 kcal (2) G-P(sol) polarization free energy of solvation -79.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds