Wall clock time and date at job start Tue Mar 31 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00064 * 2 1 4 4 C 1.50703 * 109.47087 * 270.00416 * 3 2 1 5 5 H 1.07997 * 119.99711 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99590 * 179.97438 * 4 3 2 7 7 N 1.31505 * 120.00541 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99718 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46949 * 89.99820 * 8 6 4 10 10 H 1.48492 * 109.47459 * 210.00016 * 8 6 4 11 11 H 1.48502 * 109.46981 * 330.00443 * 8 6 4 12 12 C 1.34776 * 119.99903 * 180.02562 * 2 1 3 13 13 O 1.21277 * 119.99873 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99996 * 359.97438 * 12 2 1 15 15 C 1.52999 * 109.47102 * 179.97438 * 14 12 2 16 16 N 1.46901 * 109.47073 * 179.97438 * 15 14 12 17 17 C 1.48817 * 111.18474 * 52.66386 * 16 15 14 18 18 C 1.54933 * 103.34791 * 159.50101 * 17 16 15 19 19 C 1.54596 * 102.92736 * 322.69367 * 18 17 16 20 20 C 1.47904 * 111.00049 * 169.99767 * 16 15 14 21 21 H 1.08999 * 109.91684 * 333.71122 * 20 16 15 22 22 C 1.50699 * 109.91635 * 94.80144 * 20 16 15 23 23 C 1.38665 * 120.42393 * 219.57537 * 22 20 16 24 24 C 1.38633 * 118.42443 * 179.97438 * 23 22 20 25 25 C 1.38225 * 119.15790 * 0.02711 * 24 23 22 26 26 N 1.31854 * 120.76443 * 359.97420 * 25 24 23 27 27 C 1.31883 * 121.72922 * 0.02584 * 26 25 24 28 28 H 1.09004 * 109.46828 * 269.99714 * 1 2 3 29 29 H 1.09001 * 109.47479 * 29.99861 * 1 2 3 30 30 H 1.08996 * 109.47402 * 150.00409 * 1 2 3 31 31 H 1.09007 * 109.47066 * 29.99871 * 3 2 1 32 32 H 1.08992 * 109.47368 * 149.99960 * 3 2 1 33 33 H 0.97003 * 120.00794 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.47264 * 59.99730 * 14 12 2 35 35 H 1.08997 * 109.47072 * 299.99952 * 14 12 2 36 36 H 1.08997 * 109.46949 * 59.99747 * 15 14 12 37 37 H 1.08997 * 109.47192 * 299.99970 * 15 14 12 38 38 H 1.09004 * 110.51884 * 41.07368 * 17 16 15 39 39 H 1.08990 * 110.84155 * 278.09004 * 17 16 15 40 40 H 1.09003 * 110.72588 * 204.33058 * 18 17 16 41 41 H 1.09002 * 110.87531 * 81.12236 * 18 17 16 42 42 H 1.09004 * 110.30559 * 263.04233 * 19 18 17 43 43 H 1.08996 * 110.39863 * 140.91431 * 19 18 17 44 44 H 1.08004 * 120.78413 * 0.02922 * 23 22 20 45 45 H 1.07995 * 120.41946 * 180.29699 * 24 23 22 46 46 H 1.07994 * 119.61274 * 179.97438 * 25 24 23 47 47 H 1.08002 * 119.61822 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5524 3.6186 -0.6732 8 14 3.4378 3.4170 -3.4339 9 1 2.3075 4.2592 -3.9013 10 1 4.6977 4.2004 -3.4961 11 1 3.5559 2.2197 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0018 16 7 1.6450 -4.9074 -0.0012 17 6 0.6461 -4.9522 -1.1034 18 6 0.3793 -6.4678 -1.2829 19 6 1.7743 -7.0939 -1.0551 20 6 2.5574 -6.0463 -0.2422 21 1 3.4273 -5.7121 -0.8075 22 6 2.9963 -6.6394 1.0718 23 6 4.3042 -7.0650 1.2481 24 6 4.6633 -7.6037 2.4739 25 6 3.7122 -7.6986 3.4724 26 7 2.4773 -7.2837 3.2692 27 6 2.1004 -6.7661 2.1162 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 4.0293 4.4445 -0.8503 34 1 0.7583 -2.5298 -0.8903 35 1 0.7591 -2.5302 0.8897 36 1 3.0069 -3.5778 0.8877 37 1 3.0055 -3.5771 -0.8922 38 1 1.0635 -4.5244 -2.0149 39 1 -0.2683 -4.4316 -0.8193 40 1 0.0212 -6.6797 -2.2904 41 1 -0.3313 -6.8279 -0.5389 42 1 2.2670 -7.2774 -2.0100 43 1 1.6865 -8.0223 -0.4908 44 1 5.0262 -6.9779 0.4496 45 1 5.6744 -7.9409 2.6480 46 1 3.9838 -8.1175 4.4301 47 1 1.0798 -6.4375 1.9869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346984331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:37 Heat of formation + Delta-G solvation = 4.814198 kcal Electronic energy + Delta-G solvation = -26393.366078 eV Core-core repulsion = 22768.947868 eV Total energy + Delta-G solvation = -3624.418210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61786 -39.28775 -38.49182 -34.85289 -33.63630 -32.82309 -32.55387 -31.73877 -29.55816 -28.18529 -27.56052 -25.76051 -24.23212 -23.70917 -23.16114 -22.24063 -20.82109 -20.39184 -18.28240 -17.29775 -16.82442 -16.54355 -16.37545 -16.01110 -15.36980 -15.32376 -15.13539 -14.57596 -14.28351 -14.13154 -13.88923 -13.71585 -13.29528 -13.17904 -12.93854 -12.68079 -12.33553 -12.21543 -12.17793 -11.86092 -11.73350 -11.59398 -11.36450 -11.30050 -11.12172 -10.95091 -10.89139 -10.80314 -10.55571 -10.16754 -9.91030 -9.63398 -9.57057 -9.04636 -8.88877 -8.59582 -8.44545 -7.63585 -6.04949 -4.09888 1.00187 1.16582 3.28540 3.34960 3.38113 3.45985 3.55698 3.74087 4.08779 4.29069 4.42607 4.45303 4.47838 4.67683 4.74217 4.83087 4.89738 4.94504 5.10234 5.17633 5.21364 5.25807 5.29697 5.36920 5.39117 5.52851 5.56352 5.59455 5.61991 5.74495 5.78884 5.80662 5.91986 5.92807 5.97883 6.05538 6.11723 6.18248 6.21662 6.57932 6.73391 6.90395 7.06447 7.44731 7.54434 7.89915 7.91375 8.23040 8.42700 8.89560 9.10054 9.55173 11.03137 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.002747 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.471029 B =10189.384293 C =10604.476899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.504 3.496 13 O -0.545 6.545 14 C -0.137 4.137 15 C 0.067 3.933 16 N -0.513 5.513 17 C 0.031 3.969 18 C -0.123 4.123 19 C -0.121 4.121 20 C 0.108 3.892 21 H 0.066 0.934 22 C -0.119 4.119 23 C -0.074 4.074 24 C -0.176 4.176 25 C 0.090 3.910 26 N -0.490 5.490 27 C 0.129 3.871 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.152 0.848 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 -23.842 1.912 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.290 3.710 13 O -0.423 6.423 14 C -0.178 4.178 15 C -0.061 4.061 16 N -0.237 5.237 17 C -0.097 4.097 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.001 4.001 21 H 0.084 0.916 22 C -0.121 4.121 23 C -0.101 4.101 24 C -0.195 4.195 25 C -0.066 4.066 26 N -0.198 5.198 27 C -0.028 4.028 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.169 0.831 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.042 -23.734 3.151 24.693 hybrid contribution 1.289 0.748 -2.434 2.854 sum -4.754 -22.986 0.717 23.483 Atomic orbital electron populations 1.21631 0.81438 1.02477 1.00447 1.48155 1.06185 1.07873 1.71304 1.19281 0.92572 0.78164 0.97449 1.21428 1.36530 1.06222 0.92297 0.92555 1.24942 0.95377 0.96411 0.97426 1.69928 1.38411 1.14305 1.30729 0.86499 0.77703 0.78566 0.84657 1.20619 1.21061 1.19946 1.20272 0.88067 0.85154 0.77469 1.90665 1.14002 1.87346 1.50323 1.21694 0.99256 0.92877 1.03957 1.21987 0.94950 0.86657 1.02534 1.64727 1.13411 1.02246 1.43287 1.23323 0.96718 0.96538 0.93093 1.22492 0.96767 0.94867 1.01955 1.22452 0.95801 0.98123 0.99583 1.21194 0.95588 0.91475 0.91868 0.91640 1.20732 0.94264 0.99954 0.97194 1.21490 0.95549 0.95610 0.97436 1.22075 1.01127 1.01893 0.94447 1.22749 0.88836 0.96138 0.98913 1.67761 1.18532 1.10128 1.23368 1.22664 1.00328 0.92692 0.87113 0.93704 0.90851 0.92483 0.95031 0.93877 0.92699 0.89545 0.88829 0.89913 0.93581 0.93252 0.89439 0.90904 0.90585 0.91066 0.90853 0.85147 0.85001 0.83111 0.82188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.94 16 2 N -0.60 -12.89 2.86 -182.95 -0.52 -13.41 16 3 C 0.24 6.49 5.16 -5.20 -0.03 6.47 16 4 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.83 13.28 55.43 0.74 -26.10 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.50 10.48 7.67 -10.98 -0.08 10.39 16 13 O -0.55 -13.79 15.56 5.56 0.09 -13.70 16 14 C -0.14 -2.00 3.92 -27.88 -0.11 -2.11 16 15 C 0.07 0.94 4.32 -3.82 -0.02 0.93 16 16 N -0.51 -5.65 4.31 -223.71 -0.96 -6.61 16 17 C 0.03 0.28 5.12 -1.74 -0.01 0.27 16 18 C -0.12 -0.91 7.06 -24.87 -0.18 -1.08 16 19 C -0.12 -0.96 6.55 -25.37 -0.17 -1.12 16 20 C 0.11 1.08 2.68 -67.79 -0.18 0.90 16 21 H 0.07 0.69 7.47 -51.93 -0.39 0.31 16 22 C -0.12 -1.26 4.75 -104.48 -0.50 -1.76 16 23 C -0.07 -0.72 9.83 -39.28 -0.39 -1.11 16 24 C -0.18 -1.59 10.11 -39.44 -0.40 -1.99 16 25 C 0.09 0.91 11.18 -17.55 -0.20 0.71 16 26 N -0.49 -6.00 10.36 -13.25 -0.14 -6.14 16 27 C 0.13 1.49 10.50 -17.55 -0.18 1.31 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 31 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.09 1.10 6.07 -51.93 -0.32 0.79 16 35 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 36 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 37 H 0.05 0.71 7.77 -51.93 -0.40 0.31 16 38 H 0.05 0.49 8.00 -51.93 -0.42 0.07 16 39 H 0.09 0.74 7.69 -51.93 -0.40 0.34 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.57 7.68 -51.93 -0.40 0.17 16 44 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 47 H 0.16 1.76 7.73 -52.49 -0.41 1.36 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -34.33 382.67 -9.92 -44.26 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.63 Total: -1.00 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.24 Total: 0.02 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.89 Total: -52.26 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.33 -9.92 -44.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346984331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.070 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds