Wall clock time and date at job start Tue Mar 31 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00064 * 2 1 4 4 C 1.50703 * 109.47087 * 270.00416 * 3 2 1 5 5 H 1.07997 * 119.99711 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99590 * 179.97438 * 4 3 2 7 7 N 1.31505 * 120.00541 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99718 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46949 * 89.99820 * 8 6 4 10 10 H 1.48492 * 109.47459 * 210.00016 * 8 6 4 11 11 H 1.48502 * 109.46981 * 330.00443 * 8 6 4 12 12 C 1.34776 * 119.99903 * 180.02562 * 2 1 3 13 13 O 1.21277 * 119.99873 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99996 * 359.97438 * 12 2 1 15 15 C 1.52999 * 109.47102 * 179.97438 * 14 12 2 16 16 N 1.46901 * 109.47073 * 179.97438 * 15 14 12 17 17 C 1.48817 * 111.18474 * 52.66386 * 16 15 14 18 18 C 1.54933 * 103.34791 * 159.50101 * 17 16 15 19 19 C 1.54596 * 102.92736 * 322.69367 * 18 17 16 20 20 C 1.47904 * 111.00049 * 169.99767 * 16 15 14 21 21 H 1.08999 * 109.91684 * 333.71122 * 20 16 15 22 22 C 1.50699 * 109.91635 * 94.80144 * 20 16 15 23 23 C 1.38665 * 120.42393 * 219.57537 * 22 20 16 24 24 C 1.38633 * 118.42443 * 179.97438 * 23 22 20 25 25 C 1.38225 * 119.15790 * 0.02711 * 24 23 22 26 26 N 1.31854 * 120.76443 * 359.97420 * 25 24 23 27 27 C 1.31883 * 121.72922 * 0.02584 * 26 25 24 28 28 H 1.09004 * 109.46828 * 269.99714 * 1 2 3 29 29 H 1.09001 * 109.47479 * 29.99861 * 1 2 3 30 30 H 1.08996 * 109.47402 * 150.00409 * 1 2 3 31 31 H 1.09007 * 109.47066 * 29.99871 * 3 2 1 32 32 H 1.08992 * 109.47368 * 149.99960 * 3 2 1 33 33 H 0.97003 * 120.00794 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.47264 * 59.99730 * 14 12 2 35 35 H 1.08997 * 109.47072 * 299.99952 * 14 12 2 36 36 H 1.08997 * 109.46949 * 59.99747 * 15 14 12 37 37 H 1.08997 * 109.47192 * 299.99970 * 15 14 12 38 38 H 1.09004 * 110.51884 * 41.07368 * 17 16 15 39 39 H 1.08990 * 110.84155 * 278.09004 * 17 16 15 40 40 H 1.09003 * 110.72588 * 204.33058 * 18 17 16 41 41 H 1.09002 * 110.87531 * 81.12236 * 18 17 16 42 42 H 1.09004 * 110.30559 * 263.04233 * 19 18 17 43 43 H 1.08996 * 110.39863 * 140.91431 * 19 18 17 44 44 H 1.08004 * 120.78413 * 0.02922 * 23 22 20 45 45 H 1.07995 * 120.41946 * 180.29699 * 24 23 22 46 46 H 1.07994 * 119.61274 * 179.97438 * 25 24 23 47 47 H 1.08002 * 119.61822 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5524 3.6186 -0.6732 8 14 3.4378 3.4170 -3.4339 9 1 2.3075 4.2592 -3.9013 10 1 4.6977 4.2004 -3.4961 11 1 3.5559 2.2197 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0018 16 7 1.6450 -4.9074 -0.0012 17 6 0.6461 -4.9522 -1.1034 18 6 0.3793 -6.4678 -1.2829 19 6 1.7743 -7.0939 -1.0551 20 6 2.5574 -6.0463 -0.2422 21 1 3.4273 -5.7121 -0.8075 22 6 2.9963 -6.6394 1.0718 23 6 4.3042 -7.0650 1.2481 24 6 4.6633 -7.6037 2.4739 25 6 3.7122 -7.6986 3.4724 26 7 2.4773 -7.2837 3.2692 27 6 2.1004 -6.7661 2.1162 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 4.0293 4.4445 -0.8503 34 1 0.7583 -2.5298 -0.8903 35 1 0.7591 -2.5302 0.8897 36 1 3.0069 -3.5778 0.8877 37 1 3.0055 -3.5771 -0.8922 38 1 1.0635 -4.5244 -2.0149 39 1 -0.2683 -4.4316 -0.8193 40 1 0.0212 -6.6797 -2.2904 41 1 -0.3313 -6.8279 -0.5389 42 1 2.2670 -7.2774 -2.0100 43 1 1.6865 -8.0223 -0.4908 44 1 5.0262 -6.9779 0.4496 45 1 5.6744 -7.9409 2.6480 46 1 3.9838 -8.1175 4.4301 47 1 1.0798 -6.4375 1.9869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346984331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:36 Heat of formation + Delta-G solvation = -17.657938 kcal Electronic energy + Delta-G solvation = -26394.340543 eV Core-core repulsion = 22768.947868 eV Total energy + Delta-G solvation = -3625.392675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43092 -40.70662 -39.52300 -36.63683 -34.89023 -34.48767 -33.58070 -32.47856 -30.88207 -29.31206 -28.88078 -27.29258 -25.62552 -24.54628 -24.31116 -23.45314 -21.72116 -21.22077 -19.82783 -18.72162 -18.16714 -17.95386 -17.25353 -17.14490 -16.88145 -16.62678 -16.30321 -16.04867 -15.37795 -15.25891 -14.80470 -14.67441 -14.32505 -14.20415 -14.05529 -13.92106 -13.80529 -13.49222 -13.40280 -13.26159 -13.07472 -12.82075 -12.79239 -12.56892 -12.37331 -12.22693 -12.13109 -12.07156 -11.85924 -11.71382 -11.50432 -10.69165 -10.66306 -10.61976 -10.37821 -9.80692 -9.49712 -9.42507 -8.24234 -6.39706 0.23461 0.39127 1.34830 1.38043 1.48289 1.82450 2.26535 2.40691 2.84534 3.00569 3.05185 3.52927 3.68227 3.75076 3.81824 3.94377 4.01447 4.06545 4.12793 4.15919 4.21595 4.25188 4.38449 4.47337 4.57578 4.67038 4.69177 4.71436 4.77669 4.91156 4.92682 4.94424 4.97146 4.98577 5.02368 5.10614 5.19232 5.21532 5.25341 5.32968 5.36693 5.54226 5.80158 5.82569 5.93310 5.96672 6.03974 6.67606 6.77765 7.10865 7.26174 7.46788 8.82978 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.002747 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.471029 B =10189.384293 C =10604.476899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.116 4.116 15 C 0.079 3.921 16 N -0.510 5.510 17 C 0.025 3.975 18 C -0.115 4.115 19 C -0.116 4.116 20 C 0.106 3.894 21 H 0.056 0.944 22 C -0.126 4.126 23 C -0.086 4.086 24 C -0.172 4.172 25 C 0.078 3.922 26 N -0.517 5.517 27 C 0.115 3.885 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.023 0.977 32 H -0.005 1.005 33 H 0.267 0.733 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.044 0.956 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.145 0.855 45 H 0.160 0.840 46 H 0.174 0.826 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 -25.434 0.503 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.156 4.156 15 C -0.050 4.050 16 N -0.234 5.234 17 C -0.102 4.102 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.003 4.003 21 H 0.074 0.926 22 C -0.129 4.129 23 C -0.113 4.113 24 C -0.192 4.192 25 C -0.078 4.078 26 N -0.226 5.226 27 C -0.041 4.041 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.041 0.959 32 H 0.013 0.987 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.163 0.837 45 H 0.177 0.823 46 H 0.191 0.809 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.710 -25.349 1.744 26.553 hybrid contribution 1.818 1.209 -1.919 2.907 sum -5.892 -24.140 -0.175 24.849 Atomic orbital electron populations 1.21949 0.77685 1.04125 1.02612 1.48201 1.08535 1.06354 1.71120 1.18747 0.91016 0.80525 0.96074 1.21698 1.36925 1.06547 0.92965 0.92787 1.25903 0.94867 0.96422 1.02144 1.70053 1.38949 1.14789 1.33158 0.85383 0.78120 0.78232 0.78880 1.18648 1.20660 1.19681 1.21385 0.87797 0.86780 0.75828 1.90632 1.16838 1.88283 1.52709 1.21609 0.98806 0.88842 1.06369 1.21720 0.94651 0.88343 1.00310 1.64729 1.13381 1.00842 1.44434 1.23477 0.96408 0.98203 0.92144 1.22483 0.96385 0.93221 1.03194 1.22432 0.95986 0.97410 0.99581 1.21249 0.95487 0.91658 0.91892 0.92624 1.20834 0.94667 1.00121 0.97257 1.21801 0.95607 0.95516 0.98346 1.22395 1.02215 1.00813 0.93743 1.23209 0.88439 0.95966 1.00235 1.67737 1.19854 1.11078 1.23883 1.22688 1.00611 0.93432 0.87400 0.91227 0.91581 0.88471 0.95925 0.98716 0.92367 0.86637 0.86297 0.92638 0.95636 0.93732 0.88027 0.89173 0.89997 0.90100 0.90641 0.83734 0.82276 0.80857 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.24 127.77 1.31 3.60 16 2 N -0.61 -26.24 2.86 -851.14 -2.43 -28.67 16 3 C 0.26 14.25 5.16 85.64 0.44 14.69 16 4 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.32 5.46 84.66 0.46 0.78 16 7 N -0.93 -57.06 13.28 21.45 0.28 -56.77 16 8 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 9 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.49 20.73 7.67 87.66 0.67 21.40 16 13 O -0.60 -31.99 15.56 -3.02 -0.05 -32.04 16 14 C -0.12 -3.20 3.92 29.85 0.12 -3.08 16 15 C 0.08 2.21 4.32 86.30 0.37 2.59 16 16 N -0.51 -10.61 4.31 -861.67 -3.71 -14.33 16 17 C 0.02 0.39 5.12 86.59 0.44 0.83 16 18 C -0.11 -1.37 7.06 31.80 0.22 -1.14 16 19 C -0.12 -1.61 6.55 31.47 0.21 -1.40 16 20 C 0.11 2.05 2.68 44.31 0.12 2.17 16 21 H 0.06 1.18 7.47 -2.39 -0.02 1.16 16 22 C -0.13 -2.63 4.75 -19.77 -0.09 -2.73 16 23 C -0.09 -1.62 9.83 22.47 0.22 -1.40 16 24 C -0.17 -2.89 10.11 22.36 0.23 -2.66 16 25 C 0.08 1.50 11.18 84.69 0.95 2.44 16 26 N -0.52 -12.49 10.36 -195.84 -2.03 -14.52 16 27 C 0.12 2.63 10.50 84.67 0.89 3.52 16 28 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 30 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 31 H 0.02 1.27 8.07 -2.38 -0.02 1.25 16 32 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.12 2.55 6.07 -2.38 -0.01 2.53 16 35 H 0.12 2.74 8.11 -2.39 -0.02 2.72 16 36 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 37 H 0.03 0.81 7.77 -2.39 -0.02 0.79 16 38 H 0.04 0.77 8.00 -2.39 -0.02 0.75 16 39 H 0.10 1.33 7.69 -2.39 -0.02 1.31 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.04 7.68 -2.39 -0.02 1.02 16 44 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 45 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 46 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 47 H 0.16 3.46 7.73 -2.91 -0.02 3.43 16 Total: -1.00 -78.74 382.67 1.83 -76.92 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.94 Total: 14.12 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.80 Total: 8.13 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -7.89 Total: -114.29 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.05 Total: -32.04 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -78.74 1.83 -76.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346984331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.258 kcal (2) G-P(sol) polarization free energy of solvation -78.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds