Wall clock time and date at job start Tue Mar 31 2020 11:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46894 * 110.99657 * 2 1 4 4 C 1.53237 * 109.33807 * 172.74627 * 3 2 1 5 5 N 1.47079 * 108.52016 * 53.83326 * 4 3 2 6 6 C 1.34775 * 120.87930 * 128.84114 * 5 4 3 7 7 O 1.21589 * 119.99786 * 175.00673 * 6 5 4 8 8 N 1.34771 * 120.00310 * 354.99891 * 6 5 4 9 9 C 1.46502 * 120.00057 * 184.85059 * 8 6 5 10 10 C 1.50697 * 109.47292 * 180.02562 * 9 8 6 11 11 H 1.08006 * 119.99689 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00243 * 179.97438 * 10 9 8 13 13 N 1.31506 * 119.99961 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99956 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47316 * 59.99828 * 14 12 10 16 16 H 1.48495 * 109.46947 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47206 * 300.00047 * 14 12 10 18 18 C 1.47137 * 118.25130 * 308.81267 * 5 4 3 19 19 C 1.46901 * 110.99686 * 235.70340 * 2 1 3 20 20 H 1.08996 * 109.49890 * 67.29408 * 19 2 1 21 21 C 1.52997 * 109.49331 * 307.23467 * 19 2 1 22 22 C 1.50705 * 109.47064 * 175.91634 * 21 19 2 23 23 C 1.38231 * 119.99757 * 275.23501 * 22 21 19 24 24 C 1.38238 * 119.99584 * 179.74226 * 23 22 21 25 25 C 1.38235 * 120.00023 * 0.55592 * 24 23 22 26 26 C 1.38227 * 120.00111 * 359.69897 * 25 24 23 27 27 C 1.38232 * 119.99742 * 95.51155 * 22 21 19 28 28 H 1.08999 * 109.47011 * 190.35764 * 1 2 3 29 29 H 1.09002 * 109.47222 * 310.35856 * 1 2 3 30 30 H 1.08996 * 109.47038 * 70.36213 * 1 2 3 31 31 H 1.08999 * 109.49935 * 292.70755 * 3 2 1 32 32 H 1.08995 * 109.49307 * 52.76152 * 3 2 1 33 33 H 1.09003 * 109.63227 * 173.54542 * 4 3 2 34 34 H 1.09000 * 109.62959 * 293.92837 * 4 3 2 35 35 H 0.97002 * 119.99983 * 4.84861 * 8 6 5 36 36 H 1.09003 * 109.47045 * 299.99970 * 9 8 6 37 37 H 1.08991 * 109.47470 * 59.99981 * 9 8 6 38 38 H 0.97000 * 119.99852 * 180.02562 * 13 12 10 39 39 H 1.08998 * 109.62810 * 291.48449 * 18 5 4 40 40 H 1.08997 * 109.66675 * 170.88046 * 18 5 4 41 41 H 1.09000 * 109.47441 * 295.91456 * 21 19 2 42 42 H 1.09003 * 109.47156 * 55.91617 * 21 19 2 43 43 H 1.08004 * 120.00355 * 0.02562 * 23 22 21 44 44 H 1.08008 * 119.99776 * 180.27532 * 24 23 22 45 45 H 1.08005 * 119.99603 * 179.72143 * 25 24 23 46 46 H 1.07997 * 120.00496 * 179.97438 * 26 25 24 47 47 H 1.07992 * 120.00177 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5163 1.3312 0.1826 5 7 4.0869 0.4461 -0.8442 6 6 5.1058 0.8583 -1.6242 7 8 5.6253 0.0845 -2.4050 8 7 5.5489 2.1283 -1.5388 9 6 6.5834 2.6066 -2.4592 10 6 6.8986 4.0485 -2.1550 11 1 6.3799 4.5578 -1.3563 12 6 7.8492 4.7176 -2.8964 13 7 8.4812 4.0974 -3.8687 14 14 8.2394 6.5052 -2.5198 15 1 8.7273 6.6216 -1.1220 16 1 9.2881 6.9901 -3.4527 17 1 7.0126 7.3253 -2.6857 18 6 3.5164 -0.9015 -0.9972 19 6 1.9954 -0.7728 -1.1330 20 1 1.7555 -0.2612 -2.0651 21 6 1.3636 -2.1662 -1.1381 22 6 1.8269 -2.9234 -2.3560 23 6 1.1704 -2.7612 -3.5617 24 6 1.5987 -3.4517 -4.6800 25 6 2.6761 -4.3130 -4.5900 26 6 3.3292 -4.4792 -3.3831 27 6 2.9046 -3.7843 -2.2660 28 1 -0.3633 -1.0109 0.1848 29 1 -0.3634 0.6655 0.7831 30 1 -0.3633 0.3454 -0.9679 31 1 1.7555 1.8532 -0.9478 32 1 1.5452 1.9338 0.8180 33 1 3.9255 2.3351 0.0691 34 1 3.7561 0.9482 1.1745 35 1 5.1827 2.7256 -0.8679 36 1 7.4841 2.0048 -2.3379 37 1 6.2248 2.5213 -3.4849 38 1 9.1503 4.5680 -4.3900 39 1 3.7561 -1.5023 -0.1199 40 1 3.9251 -1.3736 -1.8906 41 1 1.6642 -2.7048 -0.2394 42 1 0.2778 -2.0728 -1.1596 43 1 0.3259 -2.0916 -3.6310 44 1 1.0886 -3.3216 -5.6231 45 1 3.0079 -4.8559 -5.4628 46 1 4.1707 -5.1524 -3.3126 47 1 3.4143 -3.9147 -1.3229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355674291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:51 Heat of formation + Delta-G solvation = 10.002580 kcal Electronic energy + Delta-G solvation = -26858.848857 eV Core-core repulsion = 23234.655632 eV Total energy + Delta-G solvation = -3624.193225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.28422 -39.21751 -37.99709 -34.54310 -34.26998 -33.59793 -32.24407 -30.95485 -30.40186 -28.67841 -27.26795 -26.34864 -24.30009 -23.22000 -22.64156 -22.39659 -21.31808 -20.16062 -19.05759 -18.01316 -16.93676 -16.06566 -16.06386 -15.73594 -15.28351 -15.08513 -14.89177 -14.87588 -14.57022 -14.49565 -13.85007 -13.46990 -13.40836 -13.26259 -12.95193 -12.89032 -12.70901 -12.32341 -12.05052 -11.96710 -11.81685 -11.63297 -11.30079 -11.19916 -11.14660 -10.94567 -10.92996 -10.85665 -10.81203 -10.26361 -9.36638 -9.30795 -8.95726 -8.76454 -8.70519 -8.64093 -8.26045 -7.68454 -6.13073 -4.19752 1.28637 1.35923 3.16838 3.26837 3.31805 3.33719 3.59623 3.81543 3.96167 4.32802 4.61182 4.69787 4.71538 4.84812 4.89080 4.93882 4.95733 5.06300 5.18559 5.21406 5.22797 5.24210 5.30888 5.37098 5.44616 5.47875 5.60271 5.62493 5.70559 5.73650 5.86213 5.95746 5.97449 5.98941 6.14100 6.40316 6.47383 6.54493 6.74941 6.80412 6.89709 6.95842 7.19149 7.54197 7.57739 7.60522 7.89644 8.05003 8.78141 8.93530 9.35419 9.50494 10.97172 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.003252 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.493443 B = 8608.541832 C = 9977.457812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.537 5.537 3 C 0.042 3.958 4 C 0.117 3.883 5 N -0.641 5.641 6 C 0.697 3.303 7 O -0.596 6.596 8 N -0.730 5.730 9 C 0.267 3.733 10 C -0.542 4.542 11 H 0.061 0.939 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.276 1.276 18 C 0.144 3.856 19 C 0.077 3.923 20 H 0.048 0.952 21 C -0.073 4.073 22 C -0.082 4.082 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.115 4.115 27 C -0.111 4.111 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.385 0.615 36 H 0.025 0.975 37 H 0.023 0.977 38 H 0.266 0.734 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.616 -13.178 6.910 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.262 5.262 3 C -0.087 4.087 4 C -0.007 4.007 5 N -0.380 5.380 6 C 0.398 3.602 7 O -0.475 6.475 8 N -0.384 5.384 9 C 0.146 3.854 10 C -0.580 4.580 11 H 0.079 0.921 12 C -0.139 4.139 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C 0.020 3.980 19 C -0.032 4.032 20 H 0.066 0.934 21 C -0.111 4.111 22 C -0.083 4.083 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.133 4.133 27 C -0.129 4.129 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.219 0.781 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.866 -13.887 6.564 23.561 hybrid contribution -0.206 1.785 -0.332 1.827 sum -18.072 -12.102 6.232 22.625 Atomic orbital electron populations 1.22433 0.87474 1.02469 1.00295 1.61961 1.07541 1.13480 1.43204 1.22512 0.95712 0.89219 1.01268 1.21639 0.92031 0.94888 0.92191 1.47354 1.36662 1.15618 1.38410 1.16061 0.79876 0.83373 0.80854 1.90863 1.60226 1.54250 1.42193 1.45866 1.43903 1.09672 1.38958 1.18967 0.84919 0.93624 0.87896 1.21178 1.22751 0.95962 1.18158 0.92095 1.24935 0.95553 0.98714 0.94747 1.69968 1.25164 1.37049 1.20075 0.86482 0.78110 0.84088 0.78248 1.20063 1.21072 1.20121 1.21488 0.90084 0.83515 1.02930 1.22053 0.95628 0.93482 0.92077 0.93411 1.20672 1.00428 0.93994 0.96023 1.19786 0.96171 0.97320 0.95003 1.20989 1.00191 0.99711 0.92582 1.21117 0.97283 0.96993 0.98299 1.21148 0.96225 0.98980 0.97764 1.21161 0.99522 0.99655 0.92978 1.21086 0.96271 0.96550 0.98952 0.90955 0.91401 0.95641 0.94186 0.89565 0.89727 0.90988 0.78054 0.95674 0.95932 0.92420 0.91786 0.88479 0.89890 0.90420 0.86493 0.86261 0.86245 0.86034 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.85 60.07 0.53 0.71 16 2 N -0.54 -5.69 4.73 -234.59 -1.11 -6.80 16 3 C 0.04 0.46 5.62 -3.70 -0.02 0.44 16 4 C 0.12 1.51 6.60 -3.60 -0.02 1.48 16 5 N -0.64 -10.76 3.01 -178.15 -0.54 -11.30 16 6 C 0.70 15.34 8.31 -86.92 -0.72 14.62 16 7 O -0.60 -15.60 15.83 5.29 0.08 -15.52 16 8 N -0.73 -16.37 5.46 -66.42 -0.36 -16.74 16 9 C 0.27 7.34 5.43 -5.19 -0.03 7.32 16 10 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 11 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 12 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 13 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 14 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.14 2.12 5.30 -3.57 -0.02 2.10 16 19 C 0.08 0.91 2.06 -67.59 -0.14 0.78 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 C -0.07 -0.70 4.51 -27.88 -0.13 -0.83 16 22 C -0.08 -0.90 4.54 -104.62 -0.47 -1.38 16 23 C -0.12 -1.27 9.72 -39.58 -0.38 -1.66 16 24 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 25 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 26 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 27 C -0.11 -1.24 8.57 -39.58 -0.34 -1.58 16 28 H 0.07 0.51 6.50 -51.93 -0.34 0.18 16 29 H 0.07 0.48 7.96 -51.93 -0.41 0.07 16 30 H 0.02 0.21 8.12 -51.93 -0.42 -0.21 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.75 7.98 -51.93 -0.41 0.33 16 33 H 0.08 1.07 5.63 -51.93 -0.29 0.78 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.38 7.44 5.82 -40.82 -0.24 7.20 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 1.68 5.92 -51.93 -0.31 1.37 16 41 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 42 H 0.08 0.64 6.19 -51.93 -0.32 0.32 16 43 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 44 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 46 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -33.87 374.77 -11.27 -45.13 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.35 Total: 5.95 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.36 Total: 3.33 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -1.27 Total: -60.55 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.08 Total: -15.52 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.87 -11.27 -45.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355674291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.137 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds