Wall clock time and date at job start Tue Mar 31 2020 11:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46894 * 110.99657 * 2 1 4 4 C 1.53237 * 109.33807 * 172.74627 * 3 2 1 5 5 N 1.47079 * 108.52016 * 53.83326 * 4 3 2 6 6 C 1.34775 * 120.87930 * 128.84114 * 5 4 3 7 7 O 1.21589 * 119.99786 * 175.00673 * 6 5 4 8 8 N 1.34771 * 120.00310 * 354.99891 * 6 5 4 9 9 C 1.46502 * 120.00057 * 184.85059 * 8 6 5 10 10 C 1.50697 * 109.47292 * 180.02562 * 9 8 6 11 11 H 1.08006 * 119.99689 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00243 * 179.97438 * 10 9 8 13 13 N 1.31506 * 119.99961 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99956 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47316 * 59.99828 * 14 12 10 16 16 H 1.48495 * 109.46947 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47206 * 300.00047 * 14 12 10 18 18 C 1.47137 * 118.25130 * 308.81267 * 5 4 3 19 19 C 1.46901 * 110.99686 * 235.70340 * 2 1 3 20 20 H 1.08996 * 109.49890 * 67.29408 * 19 2 1 21 21 C 1.52997 * 109.49331 * 307.23467 * 19 2 1 22 22 C 1.50705 * 109.47064 * 175.91634 * 21 19 2 23 23 C 1.38231 * 119.99757 * 275.23501 * 22 21 19 24 24 C 1.38238 * 119.99584 * 179.74226 * 23 22 21 25 25 C 1.38235 * 120.00023 * 0.55592 * 24 23 22 26 26 C 1.38227 * 120.00111 * 359.69897 * 25 24 23 27 27 C 1.38232 * 119.99742 * 95.51155 * 22 21 19 28 28 H 1.08999 * 109.47011 * 190.35764 * 1 2 3 29 29 H 1.09002 * 109.47222 * 310.35856 * 1 2 3 30 30 H 1.08996 * 109.47038 * 70.36213 * 1 2 3 31 31 H 1.08999 * 109.49935 * 292.70755 * 3 2 1 32 32 H 1.08995 * 109.49307 * 52.76152 * 3 2 1 33 33 H 1.09003 * 109.63227 * 173.54542 * 4 3 2 34 34 H 1.09000 * 109.62959 * 293.92837 * 4 3 2 35 35 H 0.97002 * 119.99983 * 4.84861 * 8 6 5 36 36 H 1.09003 * 109.47045 * 299.99970 * 9 8 6 37 37 H 1.08991 * 109.47470 * 59.99981 * 9 8 6 38 38 H 0.97000 * 119.99852 * 180.02562 * 13 12 10 39 39 H 1.08998 * 109.62810 * 291.48449 * 18 5 4 40 40 H 1.08997 * 109.66675 * 170.88046 * 18 5 4 41 41 H 1.09000 * 109.47441 * 295.91456 * 21 19 2 42 42 H 1.09003 * 109.47156 * 55.91617 * 21 19 2 43 43 H 1.08004 * 120.00355 * 0.02562 * 23 22 21 44 44 H 1.08008 * 119.99776 * 180.27532 * 24 23 22 45 45 H 1.08005 * 119.99603 * 179.72143 * 25 24 23 46 46 H 1.07997 * 120.00496 * 179.97438 * 26 25 24 47 47 H 1.07992 * 120.00177 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5163 1.3312 0.1826 5 7 4.0869 0.4461 -0.8442 6 6 5.1058 0.8583 -1.6242 7 8 5.6253 0.0845 -2.4050 8 7 5.5489 2.1283 -1.5388 9 6 6.5834 2.6066 -2.4592 10 6 6.8986 4.0485 -2.1550 11 1 6.3799 4.5578 -1.3563 12 6 7.8492 4.7176 -2.8964 13 7 8.4812 4.0974 -3.8687 14 14 8.2394 6.5052 -2.5198 15 1 8.7273 6.6216 -1.1220 16 1 9.2881 6.9901 -3.4527 17 1 7.0126 7.3253 -2.6857 18 6 3.5164 -0.9015 -0.9972 19 6 1.9954 -0.7728 -1.1330 20 1 1.7555 -0.2612 -2.0651 21 6 1.3636 -2.1662 -1.1381 22 6 1.8269 -2.9234 -2.3560 23 6 1.1704 -2.7612 -3.5617 24 6 1.5987 -3.4517 -4.6800 25 6 2.6761 -4.3130 -4.5900 26 6 3.3292 -4.4792 -3.3831 27 6 2.9046 -3.7843 -2.2660 28 1 -0.3633 -1.0109 0.1848 29 1 -0.3634 0.6655 0.7831 30 1 -0.3633 0.3454 -0.9679 31 1 1.7555 1.8532 -0.9478 32 1 1.5452 1.9338 0.8180 33 1 3.9255 2.3351 0.0691 34 1 3.7561 0.9482 1.1745 35 1 5.1827 2.7256 -0.8679 36 1 7.4841 2.0048 -2.3379 37 1 6.2248 2.5213 -3.4849 38 1 9.1503 4.5680 -4.3900 39 1 3.7561 -1.5023 -0.1199 40 1 3.9251 -1.3736 -1.8906 41 1 1.6642 -2.7048 -0.2394 42 1 0.2778 -2.0728 -1.1596 43 1 0.3259 -2.0916 -3.6310 44 1 1.0886 -3.3216 -5.6231 45 1 3.0079 -4.8559 -5.4628 46 1 4.1707 -5.1524 -3.3126 47 1 3.4143 -3.9147 -1.3229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355674291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:50 Heat of formation + Delta-G solvation = -12.628824 kcal Electronic energy + Delta-G solvation = -26859.830228 eV Core-core repulsion = 23234.655632 eV Total energy + Delta-G solvation = -3625.174596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55608 -40.32446 -39.18441 -36.24636 -35.86269 -34.59093 -34.24421 -31.78348 -31.38986 -30.01572 -28.83898 -27.48179 -25.51617 -24.32143 -24.20798 -23.44565 -22.35404 -21.30424 -20.61334 -19.53094 -18.06729 -17.79074 -17.44119 -16.76452 -16.63070 -16.51975 -16.22054 -15.82614 -15.74176 -15.39443 -15.27979 -14.90038 -14.79740 -14.26339 -14.16982 -13.94412 -13.86750 -13.75209 -13.52049 -13.08669 -12.95994 -12.86546 -12.71258 -12.67066 -12.23874 -12.23011 -12.17765 -12.05387 -11.77951 -11.71330 -11.50798 -11.14172 -10.80027 -10.11079 -9.80284 -9.62277 -9.53869 -9.24179 -8.28624 -6.45913 0.44433 0.51373 1.42805 1.47882 1.55676 1.71163 2.16777 2.38321 2.74562 2.97653 3.06079 3.14013 3.72567 3.82477 3.92428 4.01876 4.07227 4.15083 4.16665 4.23478 4.29440 4.34085 4.55562 4.59516 4.63695 4.64785 4.70630 4.75981 4.78281 4.88669 4.93178 5.04479 5.06524 5.08561 5.18203 5.22630 5.24559 5.44359 5.51617 5.57236 5.63710 5.67810 5.70642 5.82938 5.96477 5.99314 6.12944 6.17146 6.64983 7.14568 7.24351 7.65976 8.83698 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.003252 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.493443 B = 8608.541832 C = 9977.457812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.046 3.954 4 C 0.109 3.891 5 N -0.632 5.632 6 C 0.692 3.308 7 O -0.647 6.647 8 N -0.723 5.723 9 C 0.287 3.713 10 C -0.556 4.556 11 H 0.084 0.916 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.987 3.013 15 H -0.261 1.261 16 H -0.285 1.285 17 H -0.261 1.261 18 C 0.141 3.859 19 C 0.089 3.911 20 H 0.024 0.976 21 C -0.062 4.062 22 C -0.093 4.093 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.133 4.133 27 C -0.125 4.125 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.402 0.598 36 H -0.016 1.016 37 H -0.018 1.018 38 H 0.269 0.731 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.782 -11.811 9.304 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.261 5.261 3 C -0.083 4.083 4 C -0.013 4.013 5 N -0.370 5.370 6 C 0.393 3.607 7 O -0.530 6.530 8 N -0.379 5.379 9 C 0.164 3.836 10 C -0.594 4.594 11 H 0.102 0.898 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.810 3.190 15 H -0.185 1.185 16 H -0.211 1.211 17 H -0.186 1.186 18 C 0.018 3.982 19 C -0.020 4.020 20 H 0.042 0.958 21 C -0.100 4.100 22 C -0.093 4.093 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.155 4.155 26 C -0.151 4.151 27 C -0.143 4.143 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.240 0.760 36 H 0.002 0.998 37 H 0.000 1.000 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.151 0.849 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.115 -12.529 9.031 25.360 hybrid contribution 0.432 1.267 -1.072 1.715 sum -19.683 -11.263 7.958 24.034 Atomic orbital electron populations 1.22542 0.85421 1.03954 1.00814 1.61994 1.09267 1.12952 1.41850 1.22523 0.94118 0.89801 1.01833 1.21981 0.93507 0.94201 0.91657 1.47396 1.34845 1.16914 1.37822 1.16260 0.80690 0.82702 0.81039 1.90822 1.62182 1.55438 1.44519 1.45460 1.43240 1.10413 1.38770 1.18396 0.84351 0.93905 0.86972 1.21543 1.23220 0.95742 1.18893 0.89834 1.26083 0.95016 1.04263 0.94132 1.70143 1.25885 1.39515 1.21387 0.85176 0.78221 0.77129 0.78489 1.18535 1.21050 1.18557 1.21625 0.92044 0.82322 1.02191 1.21845 0.93504 0.95007 0.91681 0.95826 1.20629 1.01355 0.92220 0.95808 1.20008 0.96164 0.97412 0.95731 1.21274 1.00767 0.99967 0.92711 1.21436 0.97450 0.96891 0.99175 1.21449 0.96383 0.99294 0.98333 1.21452 1.00124 1.00169 0.93316 1.21322 0.96635 0.96890 0.99465 0.89468 0.89638 0.95924 0.95723 0.86193 0.89597 0.88921 0.76005 0.99810 0.99998 0.92205 0.90181 0.91560 0.88744 0.88368 0.85104 0.84567 0.84691 0.84929 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.85 127.69 1.13 1.38 16 2 N -0.54 -9.80 4.73 -896.10 -4.24 -14.04 16 3 C 0.05 0.88 5.62 86.38 0.49 1.36 16 4 C 0.11 2.60 6.60 86.35 0.57 3.17 16 5 N -0.63 -21.20 3.01 -835.79 -2.52 -23.71 16 6 C 0.69 31.59 8.31 179.06 1.49 33.07 16 7 O -0.65 -35.92 15.83 -4.00 -0.06 -35.99 16 8 N -0.72 -33.35 5.46 -482.31 -2.64 -35.99 16 9 C 0.29 16.57 5.43 85.63 0.47 17.04 16 10 C -0.56 -31.00 9.28 25.60 0.24 -30.76 16 11 H 0.08 4.18 7.60 -2.91 -0.02 4.15 16 12 C 0.00 0.27 5.46 84.66 0.46 0.73 16 13 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 14 Si 0.99 42.63 29.54 68.60 2.03 44.65 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 16 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 18 C 0.14 4.16 5.30 86.34 0.46 4.62 16 19 C 0.09 2.02 2.06 45.00 0.09 2.11 16 20 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 21 C -0.06 -1.08 4.51 29.85 0.13 -0.95 16 22 C -0.09 -2.00 4.54 -19.87 -0.09 -2.09 16 23 C -0.13 -2.78 9.72 22.27 0.22 -2.56 16 24 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 25 C -0.14 -3.00 10.05 22.27 0.22 -2.78 16 26 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 27 C -0.13 -2.84 8.57 22.27 0.19 -2.65 16 28 H 0.09 0.88 6.50 -2.39 -0.02 0.86 16 29 H 0.08 0.83 7.96 -2.39 -0.02 0.82 16 30 H 0.02 0.31 8.12 -2.39 -0.02 0.29 16 31 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 1.55 7.98 -2.39 -0.02 1.53 16 33 H 0.09 2.01 5.63 -2.39 -0.01 2.00 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.40 15.43 5.82 -92.71 -0.54 14.89 16 36 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 37 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 2.39 5.92 -2.39 -0.01 2.38 16 41 H 0.09 1.46 8.05 -2.39 -0.02 1.44 16 42 H 0.10 1.33 6.19 -2.39 -0.01 1.31 16 43 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 44 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 45 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 47 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -77.51 374.77 -0.21 -77.72 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.42 Total: 27.95 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 6.51 Total: 16.29 kcal Atomic # 7 Polarization: -121.53 SS G_CDS: -9.10 Total: -130.63 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.06 Total: -35.99 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -77.51 -0.21 -77.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355674291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.096 kcal (2) G-P(sol) polarization free energy of solvation -77.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds