Wall clock time and date at job start Tue Mar 31 2020 11:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36337 * 125.63650 * 2 1 4 4 C 1.34851 * 108.22383 * 180.02562 * 3 2 1 5 5 C 1.40896 * 107.41139 * 359.76792 * 4 3 2 6 6 C 1.34847 * 107.41802 * 0.38085 * 5 4 3 7 7 C 1.50707 * 125.89017 * 179.88354 * 6 5 4 8 8 H 1.08996 * 109.99741 * 205.05175 * 7 6 5 9 9 C 1.54335 * 109.98889 * 84.01031 * 7 6 5 10 10 C 1.55162 * 103.01869 * 218.66399 * 9 7 6 11 11 C 1.54909 * 101.58094 * 35.31044 * 10 9 7 12 12 N 1.47022 * 109.88018 * 326.14658 * 7 6 5 13 13 C 1.34781 * 125.64545 * 298.38756 * 12 7 6 14 14 O 1.21580 * 120.00277 * 4.73251 * 13 12 7 15 15 N 1.34780 * 119.99728 * 184.72531 * 13 12 7 16 16 C 1.46501 * 119.99899 * 184.99644 * 15 13 12 17 17 C 1.53004 * 109.47060 * 184.79866 * 16 15 13 18 18 C 1.50696 * 115.54735 * 298.05141 * 17 16 15 19 19 H 1.08005 * 119.99217 * 94.37868 * 18 17 16 20 20 C 1.37873 * 120.00315 * 274.37853 * 18 17 16 21 21 N 1.31514 * 120.00228 * 5.81131 * 20 18 17 22 22 Si 1.86800 * 120.00041 * 185.81531 * 20 18 17 23 23 H 1.48504 * 109.47182 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.46923 * 299.99739 * 22 20 18 25 25 H 1.48507 * 109.47161 * 59.99853 * 22 20 18 26 26 C 1.52996 * 117.49678 * 83.72467 * 17 16 15 27 27 C 1.52998 * 117.49476 * 152.38305 * 17 16 15 28 28 H 1.09005 * 109.46985 * 269.97224 * 1 2 3 29 29 H 1.08990 * 109.47196 * 29.97337 * 1 2 3 30 30 H 1.09004 * 109.47070 * 149.97834 * 1 2 3 31 31 H 1.07999 * 125.89230 * 0.06051 * 3 2 1 32 32 H 1.08000 * 126.29443 * 180.02562 * 4 3 2 33 33 H 1.08009 * 126.28906 * 180.23981 * 5 4 3 34 34 H 1.09000 * 110.84767 * 100.20314 * 9 7 6 35 35 H 1.08996 * 110.66883 * 337.04917 * 9 7 6 36 36 H 1.08998 * 111.00559 * 277.23811 * 10 9 7 37 37 H 1.08998 * 110.99960 * 153.38241 * 10 9 7 38 38 H 1.09001 * 110.36697 * 204.15406 * 11 10 9 39 39 H 1.09001 * 110.46025 * 81.87078 * 11 10 9 40 40 H 0.96998 * 119.99923 * 4.99194 * 15 13 12 41 41 H 1.08999 * 109.47377 * 64.79674 * 16 15 13 42 42 H 1.09000 * 109.46820 * 304.79800 * 16 15 13 43 43 H 0.97008 * 119.99824 * 355.14300 * 21 20 18 44 44 H 1.08998 * 117.49740 * 215.00126 * 26 17 16 45 45 H 1.08998 * 117.50390 * 0.02592 * 26 17 16 46 46 H 1.08997 * 117.50292 * 359.97438 * 27 17 16 47 47 H 1.09006 * 117.49176 * 144.97396 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7045 -0.0006 5 6 3.5460 -0.7044 0.0045 6 6 2.2594 -1.1081 -0.0006 7 6 1.7819 -2.5375 -0.0003 8 1 0.7856 -2.5978 -0.4384 9 6 1.7518 -3.0834 1.4429 10 6 2.2467 -4.5443 1.2744 11 6 3.2893 -4.3905 0.1390 12 7 2.7159 -3.3768 -0.7650 13 6 3.0045 -3.2387 -2.0743 14 8 2.5404 -2.3082 -2.7043 15 7 3.8077 -4.1322 -2.6851 16 6 4.2099 -3.9231 -4.0782 17 6 5.0144 -5.1307 -4.5635 18 6 6.3015 -5.3933 -3.8252 19 1 6.3183 -6.0903 -3.0003 20 6 7.4577 -4.7439 -4.2026 21 7 7.4159 -3.8121 -5.1298 22 14 9.0837 -5.1876 -3.3972 23 1 10.1668 -4.3522 -3.9753 24 1 8.9952 -4.9420 -1.9353 25 1 9.3818 -6.6219 -3.6411 26 6 4.2315 -6.3428 -5.0721 27 6 4.9814 -5.4461 -6.0603 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.9172 2.1324 0.0009 32 1 4.4165 1.3438 -0.0003 33 1 4.4166 -1.3437 0.0091 34 1 0.7386 -3.0635 1.8442 35 1 2.4296 -2.5180 2.0824 36 1 1.4313 -5.2004 0.9698 37 1 2.7160 -4.9058 2.1894 38 1 3.4204 -5.3365 -0.3864 39 1 4.2419 -4.0451 0.5407 40 1 4.1195 -4.9136 -2.2024 41 1 4.8242 -3.0254 -4.1483 42 1 3.3217 -3.8049 -4.6990 43 1 6.5858 -3.6306 -5.5979 44 1 4.6475 -7.3304 -4.8726 45 1 3.1434 -6.2799 -5.0613 46 1 4.3863 -4.7936 -6.6992 47 1 5.8910 -5.8433 -6.5110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366807325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:18 Heat of formation + Delta-G solvation = 51.184624 kcal Electronic energy + Delta-G solvation = -27520.920604 eV Core-core repulsion = 23898.513167 eV Total energy + Delta-G solvation = -3622.407437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22520 -39.60579 -37.60368 -36.63833 -33.36660 -32.72808 -31.88063 -31.25530 -30.61037 -26.93375 -26.27375 -26.15924 -24.79158 -23.11489 -21.42979 -21.32406 -20.45998 -19.82402 -19.62344 -18.58274 -17.71462 -17.06144 -16.45897 -16.01029 -15.19678 -14.94796 -14.66873 -14.22470 -14.11261 -13.75482 -13.63915 -13.27437 -13.02451 -12.97359 -12.84840 -12.70199 -12.43139 -12.24591 -12.22701 -11.90845 -11.79380 -11.56621 -11.45210 -11.33213 -10.90314 -10.85326 -10.79057 -10.46480 -10.12808 -9.72846 -9.52015 -8.67482 -8.53023 -8.46172 -8.37200 -8.34901 -8.00818 -7.70593 -6.36030 -4.12259 2.37872 2.88522 3.22172 3.35282 3.42139 3.42947 3.62119 3.78802 4.39244 4.47967 4.50739 4.66998 4.72873 4.75470 5.01528 5.03885 5.12158 5.17180 5.26525 5.32476 5.33105 5.43697 5.58969 5.65410 5.73794 5.75576 5.85896 5.87656 5.98936 6.07525 6.18313 6.27705 6.41016 6.46997 6.54539 6.56128 6.61996 6.73425 6.88452 7.21385 7.23658 7.25976 7.36740 7.44548 7.56508 7.57967 8.20008 8.35592 8.62502 8.84743 9.22056 9.64158 11.03373 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.003864 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.161768 B = 7244.166629 C = 7432.070767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.446 5.446 3 C -0.022 4.022 4 C -0.197 4.197 5 C -0.173 4.173 6 C 0.020 3.980 7 C 0.230 3.770 8 H 0.070 0.930 9 C -0.122 4.122 10 C -0.130 4.130 11 C 0.100 3.900 12 N -0.630 5.630 13 C 0.719 3.281 14 O -0.590 6.590 15 N -0.717 5.717 16 C 0.179 3.821 17 C 0.006 3.994 18 C -0.575 4.575 19 H 0.052 0.948 20 C 0.030 3.970 21 N -0.900 5.900 22 Si 1.066 2.934 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.288 1.288 26 C -0.194 4.194 27 C -0.171 4.171 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.157 0.843 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.397 0.603 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.276 0.724 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.433 2.160 14.721 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.123 5.123 3 C -0.151 4.151 4 C -0.222 4.222 5 C -0.198 4.198 6 C -0.092 4.092 7 C 0.124 3.876 8 H 0.088 0.912 9 C -0.160 4.160 10 C -0.168 4.168 11 C -0.023 4.023 12 N -0.370 5.370 13 C 0.421 3.579 14 O -0.468 6.468 15 N -0.370 5.370 16 C 0.055 3.945 17 C 0.005 3.995 18 C -0.613 4.613 19 H 0.070 0.930 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.894 3.106 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.215 1.215 26 C -0.231 4.231 27 C -0.210 4.210 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.174 0.826 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.232 0.768 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.491 3.279 14.148 19.156 hybrid contribution -1.412 -0.666 -0.033 1.561 sum -13.902 2.613 14.115 19.984 Atomic orbital electron populations 1.21930 0.78123 1.04212 1.02477 1.43705 1.05589 1.05681 1.57276 1.21637 0.90576 0.90912 1.11992 1.20835 0.95792 0.95180 1.10432 1.20504 0.95189 0.94763 1.09321 1.20365 0.90648 0.88083 1.10116 1.19451 0.92166 0.84624 0.91332 0.91237 1.22703 1.02426 0.96216 0.94677 1.22761 0.98938 0.96375 0.98714 1.22256 0.96851 0.92167 0.91016 1.47481 1.47820 1.34462 1.07232 1.15503 0.79996 0.82750 0.79667 1.90882 1.57944 1.34001 1.63988 1.45032 1.51452 1.25689 1.14803 1.20850 0.95672 0.99013 0.78925 1.19332 0.95850 0.91102 0.93180 1.21142 0.92097 1.29515 1.18538 0.93007 1.25744 1.02275 0.92979 0.96676 1.70725 1.31975 1.27406 1.23258 0.83593 0.75590 0.75822 0.75594 1.20801 1.21468 1.21501 1.22890 0.96179 0.96538 1.07516 1.22738 1.01276 1.03325 0.93632 0.91322 0.90152 0.90189 0.82582 0.85083 0.85503 0.90210 0.89932 0.90563 0.89688 0.90598 0.91265 0.76834 0.92302 0.94429 0.91223 0.90124 0.91487 0.91308 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.92 59.85 0.65 1.34 16 2 N -0.45 -6.10 3.15 -119.90 -0.38 -6.48 16 3 C -0.02 -0.30 11.43 -16.75 -0.19 -0.50 16 4 C -0.20 -3.12 10.86 -39.78 -0.43 -3.56 16 5 C -0.17 -3.00 10.20 -39.78 -0.41 -3.40 16 6 C 0.02 0.31 4.96 -81.79 -0.41 -0.10 16 7 C 0.23 3.15 3.11 -68.10 -0.21 2.94 16 8 H 0.07 0.95 6.96 -51.93 -0.36 0.59 16 9 C -0.12 -1.16 6.47 -24.89 -0.16 -1.32 16 10 C -0.13 -1.14 7.09 -24.58 -0.17 -1.31 16 11 C 0.10 1.23 6.72 -2.53 -0.02 1.21 16 12 N -0.63 -10.03 2.73 -169.99 -0.46 -10.49 16 13 C 0.72 14.80 8.16 -86.91 -0.71 14.09 16 14 O -0.59 -14.35 16.05 5.30 0.09 -14.26 16 15 N -0.72 -14.95 5.40 -65.22 -0.35 -15.30 16 16 C 0.18 4.23 5.48 -4.04 -0.02 4.21 16 17 C 0.01 0.15 1.02 -155.66 -0.16 -0.01 16 18 C -0.58 -15.07 8.44 -34.44 -0.29 -15.36 16 19 H 0.05 1.34 7.82 -52.48 -0.41 0.93 16 20 C 0.03 0.82 5.39 -17.82 -0.10 0.73 16 21 N -0.90 -26.33 13.56 55.43 0.75 -25.58 16 22 Si 1.07 24.40 29.91 -169.99 -5.08 19.32 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.19 -4.10 9.95 -26.70 -0.27 -4.36 16 27 C -0.17 -3.91 8.58 -26.69 -0.23 -4.13 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.74 6.97 -51.93 -0.36 0.38 16 31 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.13 2.32 8.06 -52.48 -0.42 1.90 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.82 7.84 -51.93 -0.41 0.41 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.90 7.06 -51.93 -0.37 0.54 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 7.71 6.61 -40.82 -0.27 7.44 16 41 H 0.06 1.58 8.00 -51.93 -0.42 1.16 16 42 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 43 H 0.28 8.08 6.27 -40.82 -0.26 7.82 16 44 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 382.12 15.07 5.76 5.76 Total: -1.00 -33.91 382.12 -10.36 -44.27 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -7.56 Total: 12.30 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -3.12 Total: -9.54 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.44 Total: -57.84 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.09 Total: -14.26 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.08 Total: 19.32 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.91 -10.36 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366807325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.455 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds