Wall clock time and date at job start Tue Mar 31 2020 11:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36337 * 125.63650 * 2 1 4 4 C 1.34851 * 108.22383 * 180.02562 * 3 2 1 5 5 C 1.40896 * 107.41139 * 359.76792 * 4 3 2 6 6 C 1.34847 * 107.41802 * 0.38085 * 5 4 3 7 7 C 1.50707 * 125.89017 * 179.88354 * 6 5 4 8 8 H 1.08996 * 109.99741 * 205.05175 * 7 6 5 9 9 C 1.54335 * 109.98889 * 84.01031 * 7 6 5 10 10 C 1.55162 * 103.01869 * 218.66399 * 9 7 6 11 11 C 1.54909 * 101.58094 * 35.31044 * 10 9 7 12 12 N 1.47022 * 109.88018 * 326.14658 * 7 6 5 13 13 C 1.34781 * 125.64545 * 298.38756 * 12 7 6 14 14 O 1.21580 * 120.00277 * 4.73251 * 13 12 7 15 15 N 1.34780 * 119.99728 * 184.72531 * 13 12 7 16 16 C 1.46501 * 119.99899 * 184.99644 * 15 13 12 17 17 C 1.53004 * 109.47060 * 184.79866 * 16 15 13 18 18 C 1.50696 * 115.54735 * 298.05141 * 17 16 15 19 19 H 1.08005 * 119.99217 * 94.37868 * 18 17 16 20 20 C 1.37873 * 120.00315 * 274.37853 * 18 17 16 21 21 N 1.31514 * 120.00228 * 5.81131 * 20 18 17 22 22 Si 1.86800 * 120.00041 * 185.81531 * 20 18 17 23 23 H 1.48504 * 109.47182 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.46923 * 299.99739 * 22 20 18 25 25 H 1.48507 * 109.47161 * 59.99853 * 22 20 18 26 26 C 1.52996 * 117.49678 * 83.72467 * 17 16 15 27 27 C 1.52998 * 117.49476 * 152.38305 * 17 16 15 28 28 H 1.09005 * 109.46985 * 269.97224 * 1 2 3 29 29 H 1.08990 * 109.47196 * 29.97337 * 1 2 3 30 30 H 1.09004 * 109.47070 * 149.97834 * 1 2 3 31 31 H 1.07999 * 125.89230 * 0.06051 * 3 2 1 32 32 H 1.08000 * 126.29443 * 180.02562 * 4 3 2 33 33 H 1.08009 * 126.28906 * 180.23981 * 5 4 3 34 34 H 1.09000 * 110.84767 * 100.20314 * 9 7 6 35 35 H 1.08996 * 110.66883 * 337.04917 * 9 7 6 36 36 H 1.08998 * 111.00559 * 277.23811 * 10 9 7 37 37 H 1.08998 * 110.99960 * 153.38241 * 10 9 7 38 38 H 1.09001 * 110.36697 * 204.15406 * 11 10 9 39 39 H 1.09001 * 110.46025 * 81.87078 * 11 10 9 40 40 H 0.96998 * 119.99923 * 4.99194 * 15 13 12 41 41 H 1.08999 * 109.47377 * 64.79674 * 16 15 13 42 42 H 1.09000 * 109.46820 * 304.79800 * 16 15 13 43 43 H 0.97008 * 119.99824 * 355.14300 * 21 20 18 44 44 H 1.08998 * 117.49740 * 215.00126 * 26 17 16 45 45 H 1.08998 * 117.50390 * 0.02592 * 26 17 16 46 46 H 1.08997 * 117.50292 * 359.97438 * 27 17 16 47 47 H 1.09006 * 117.49176 * 144.97396 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7045 -0.0006 5 6 3.5460 -0.7044 0.0045 6 6 2.2594 -1.1081 -0.0006 7 6 1.7819 -2.5375 -0.0003 8 1 0.7856 -2.5978 -0.4384 9 6 1.7518 -3.0834 1.4429 10 6 2.2467 -4.5443 1.2744 11 6 3.2893 -4.3905 0.1390 12 7 2.7159 -3.3768 -0.7650 13 6 3.0045 -3.2387 -2.0743 14 8 2.5404 -2.3082 -2.7043 15 7 3.8077 -4.1322 -2.6851 16 6 4.2099 -3.9231 -4.0782 17 6 5.0144 -5.1307 -4.5635 18 6 6.3015 -5.3933 -3.8252 19 1 6.3183 -6.0903 -3.0003 20 6 7.4577 -4.7439 -4.2026 21 7 7.4159 -3.8121 -5.1298 22 14 9.0837 -5.1876 -3.3972 23 1 10.1668 -4.3522 -3.9753 24 1 8.9952 -4.9420 -1.9353 25 1 9.3818 -6.6219 -3.6411 26 6 4.2315 -6.3428 -5.0721 27 6 4.9814 -5.4461 -6.0603 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.9172 2.1324 0.0009 32 1 4.4165 1.3438 -0.0003 33 1 4.4166 -1.3437 0.0091 34 1 0.7386 -3.0635 1.8442 35 1 2.4296 -2.5180 2.0824 36 1 1.4313 -5.2004 0.9698 37 1 2.7160 -4.9058 2.1894 38 1 3.4204 -5.3365 -0.3864 39 1 4.2419 -4.0451 0.5407 40 1 4.1195 -4.9136 -2.2024 41 1 4.8242 -3.0254 -4.1483 42 1 3.3217 -3.8049 -4.6990 43 1 6.5858 -3.6306 -5.5979 44 1 4.6475 -7.3304 -4.8726 45 1 3.1434 -6.2799 -5.0613 46 1 4.3863 -4.7936 -6.6992 47 1 5.8910 -5.8433 -6.5110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366807325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:17 Heat of formation + Delta-G solvation = 31.345652 kcal Electronic energy + Delta-G solvation = -27521.780886 eV Core-core repulsion = 23898.513167 eV Total energy + Delta-G solvation = -3623.267719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35304 -41.02881 -39.14780 -38.22623 -35.10303 -33.93251 -33.72299 -32.43230 -31.68420 -28.01452 -27.90961 -27.17062 -26.83353 -24.35803 -23.10987 -22.30689 -21.70246 -21.51665 -21.08571 -19.97099 -19.10259 -18.43833 -18.03035 -17.34147 -16.43322 -16.31369 -16.09837 -15.71928 -15.61375 -15.19188 -15.06960 -14.68249 -14.38958 -14.28807 -14.18060 -14.00649 -13.82152 -13.57994 -13.32278 -13.15026 -12.94315 -12.86328 -12.78882 -12.61730 -12.36223 -12.24411 -12.15449 -11.96131 -11.65600 -11.52895 -11.27247 -10.56025 -10.46069 -10.33954 -10.11991 -9.56385 -9.46761 -8.86899 -8.52058 -6.27982 1.23240 1.55418 1.62351 1.62756 1.80287 2.09791 2.12921 2.22826 2.59814 3.01702 3.24868 3.35629 3.57854 3.68419 3.81858 3.97890 4.04080 4.10483 4.17577 4.30709 4.35051 4.43243 4.44168 4.52684 4.55188 4.65890 4.66896 4.71938 4.73944 4.76964 4.81761 4.89991 4.94599 5.04283 5.08224 5.22473 5.31927 5.37452 5.38725 5.43050 5.45025 5.61715 5.99961 6.13331 6.13699 6.26260 6.30927 6.55305 6.69300 7.05898 7.55661 7.61062 8.87675 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.003864 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.161768 B = 7244.166629 C = 7432.070767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.447 5.447 3 C -0.013 4.013 4 C -0.232 4.232 5 C -0.213 4.213 6 C 0.016 3.984 7 C 0.221 3.779 8 H 0.073 0.927 9 C -0.109 4.109 10 C -0.113 4.113 11 C 0.088 3.912 12 N -0.626 5.626 13 C 0.714 3.286 14 O -0.634 6.634 15 N -0.714 5.714 16 C 0.198 3.802 17 C -0.019 4.019 18 C -0.573 4.573 19 H 0.055 0.945 20 C -0.020 4.020 21 N -0.933 5.933 22 Si 1.108 2.892 23 H -0.293 1.293 24 H -0.274 1.274 25 H -0.268 1.268 26 C -0.161 4.161 27 C -0.177 4.177 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.193 0.807 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.404 0.596 41 H 0.013 0.987 42 H 0.036 0.964 43 H 0.264 0.736 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.622 0.834 17.156 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.123 5.123 3 C -0.144 4.144 4 C -0.256 4.256 5 C -0.238 4.238 6 C -0.098 4.098 7 C 0.116 3.884 8 H 0.090 0.910 9 C -0.148 4.148 10 C -0.151 4.151 11 C -0.034 4.034 12 N -0.364 5.364 13 C 0.416 3.584 14 O -0.516 6.516 15 N -0.368 5.368 16 C 0.073 3.927 17 C -0.019 4.019 18 C -0.611 4.611 19 H 0.073 0.927 20 C -0.220 4.220 21 N -0.569 5.569 22 Si 0.931 3.069 23 H -0.219 1.219 24 H -0.199 1.199 25 H -0.193 1.193 26 C -0.198 4.198 27 C -0.215 4.215 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.210 0.790 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.240 0.760 41 H 0.031 0.969 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.096 0.904 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.720 1.909 16.649 22.305 hybrid contribution -0.799 -0.222 -0.771 1.132 sum -15.518 1.687 15.878 22.266 Atomic orbital electron populations 1.22276 0.75246 1.05077 1.04792 1.44046 1.07386 1.04952 1.55876 1.22147 0.89875 0.92464 1.09871 1.21064 0.97365 0.94818 1.12363 1.20493 0.95528 0.95534 1.12287 1.20576 0.90431 0.89503 1.09259 1.19865 0.91351 0.83628 0.93592 0.90957 1.22703 1.04402 0.96171 0.91480 1.22767 0.98146 0.96110 0.98098 1.22568 0.97938 0.91162 0.91722 1.47511 1.47558 1.35339 1.05956 1.15675 0.79589 0.82005 0.81119 1.90834 1.59553 1.35533 1.65679 1.44849 1.51718 1.26246 1.13991 1.20419 0.94621 0.97108 0.80574 1.19315 0.96068 0.92717 0.93846 1.21433 0.92915 1.28492 1.18238 0.92685 1.27027 1.05803 0.92555 0.96638 1.70835 1.31422 1.29524 1.25154 0.83042 0.71889 0.76443 0.75490 1.21922 1.19897 1.19293 1.22890 0.97127 0.95551 1.04208 1.22682 1.01231 1.04271 0.93305 0.88198 0.88405 0.90315 0.79028 0.84828 0.88137 0.86864 0.90352 0.89037 0.86927 0.90190 0.91897 0.75978 0.96868 0.94569 0.92567 0.89248 0.89250 0.90360 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 10.92 127.77 1.39 2.43 16 2 N -0.45 -11.62 3.15 -533.26 -1.68 -13.30 16 3 C -0.01 -0.36 11.43 83.21 0.95 0.59 16 4 C -0.23 -7.59 10.86 22.14 0.24 -7.35 16 5 C -0.21 -7.77 10.20 22.14 0.23 -7.55 16 6 C 0.02 0.49 4.96 41.08 0.20 0.69 16 7 C 0.22 5.78 3.11 44.60 0.14 5.92 16 8 H 0.07 1.86 6.96 -2.39 -0.02 1.84 16 9 C -0.11 -1.75 6.47 31.79 0.21 -1.55 16 10 C -0.11 -1.59 7.09 31.99 0.23 -1.36 16 11 C 0.09 2.05 6.72 86.86 0.58 2.63 16 12 N -0.63 -19.81 2.73 -810.00 -2.21 -22.02 16 13 C 0.71 30.16 8.16 179.05 1.46 31.62 16 14 O -0.63 -32.00 16.05 -3.97 -0.06 -32.06 16 15 N -0.71 -30.44 5.40 -478.53 -2.59 -33.03 16 16 C 0.20 9.67 5.48 86.38 0.47 10.14 16 17 C -0.02 -0.89 1.02 -52.93 -0.05 -0.95 16 18 C -0.57 -30.19 8.44 25.60 0.22 -29.97 16 19 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 20 C -0.02 -1.11 5.39 84.65 0.46 -0.65 16 21 N -0.93 -56.54 13.56 21.45 0.29 -56.25 16 22 Si 1.11 49.41 29.91 68.60 2.05 51.46 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 C -0.16 -6.53 9.95 30.62 0.30 -6.23 16 27 C -0.18 -8.09 8.58 30.62 0.26 -7.83 16 28 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.27 6.97 -2.38 -0.02 1.25 16 31 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 33 H 0.10 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.37 7.84 -2.39 -0.02 1.35 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.79 7.06 -2.39 -0.02 1.77 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.40 15.74 6.61 -92.71 -0.61 15.12 16 41 H 0.01 0.75 8.00 -2.39 -0.02 0.73 16 42 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 43 H 0.26 16.18 6.27 -92.70 -0.58 15.60 16 44 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 45 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 47 H 0.07 3.38 8.14 -2.38 -0.02 3.36 16 Total: -1.00 -78.01 382.12 3.62 -74.39 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: 0.53 Total: 40.21 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 7.29 Total: -9.41 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -6.19 Total: -124.59 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.06 Total: -32.06 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.05 Total: 51.46 kcal Total: -78.01 3.62 -74.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366807325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.736 kcal (2) G-P(sol) polarization free energy of solvation -78.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds