Wall clock time and date at job start Tue Mar 31 2020 11:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36346 * 125.63108 * 2 1 4 4 C 1.34850 * 108.21388 * 180.26336 * 3 2 1 5 5 C 1.40889 * 107.41989 * 359.73420 * 4 3 2 6 6 C 1.34850 * 107.41699 * 0.02562 * 5 4 3 7 7 C 1.50702 * 125.89161 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.99626 * 155.27803 * 7 6 5 9 9 C 1.54317 * 109.76976 * 276.43101 * 7 6 5 10 10 C 1.55161 * 102.86071 * 141.88613 * 9 7 6 11 11 C 1.54914 * 101.57994 * 324.30503 * 10 9 7 12 12 N 1.47022 * 109.88239 * 34.18168 * 7 6 5 13 13 C 1.34780 * 125.64868 * 61.67959 * 12 7 6 14 14 O 1.21578 * 119.99905 * 4.17328 * 13 12 7 15 15 N 1.34775 * 119.99581 * 184.17916 * 13 12 7 16 16 C 1.46505 * 119.99515 * 175.32313 * 15 13 12 17 17 C 1.53001 * 109.46821 * 184.60055 * 16 15 13 18 18 C 1.50698 * 115.55481 * 304.43703 * 17 16 15 19 19 H 1.08001 * 119.99834 * 144.28030 * 18 17 16 20 20 C 1.37876 * 119.99642 * 324.28320 * 18 17 16 21 21 N 1.31515 * 120.00350 * 3.32695 * 20 18 17 22 22 Si 1.86805 * 119.99635 * 183.33309 * 20 18 17 23 23 H 1.48497 * 109.47174 * 89.99964 * 22 20 18 24 24 H 1.48504 * 109.46839 * 209.99914 * 22 20 18 25 25 H 1.48498 * 109.47260 * 329.99456 * 22 20 18 26 26 C 1.53007 * 117.49342 * 158.76340 * 17 16 15 27 27 C 1.53003 * 117.49336 * 90.10781 * 17 16 15 28 28 H 1.08998 * 109.47247 * 275.04253 * 1 2 3 29 29 H 1.08994 * 109.46895 * 35.05129 * 1 2 3 30 30 H 1.09001 * 109.46683 * 155.04801 * 1 2 3 31 31 H 1.07999 * 125.89156 * 359.97438 * 3 2 1 32 32 H 1.07999 * 126.28948 * 179.71308 * 4 3 2 33 33 H 1.07998 * 126.29083 * 180.02562 * 5 4 3 34 34 H 1.08996 * 110.92712 * 23.47371 * 9 7 6 35 35 H 1.08996 * 110.74312 * 260.21201 * 9 7 6 36 36 H 1.08996 * 111.00521 * 206.22675 * 10 9 7 37 37 H 1.08996 * 111.03696 * 82.38714 * 10 9 7 38 38 H 1.09003 * 110.36294 * 278.16698 * 11 10 9 39 39 H 1.08997 * 110.45869 * 155.89796 * 11 10 9 40 40 H 0.97002 * 120.00273 * 355.04189 * 15 13 12 41 41 H 1.08998 * 109.46985 * 304.60492 * 16 15 13 42 42 H 1.09003 * 109.46839 * 64.60701 * 16 15 13 43 43 H 0.97003 * 120.00134 * 185.00951 * 21 20 18 44 44 H 1.09002 * 117.49929 * 0.02562 * 26 17 16 45 45 H 1.09000 * 117.49395 * 145.02429 * 26 17 16 46 46 H 1.08997 * 117.49634 * 214.97626 * 27 17 16 47 47 H 1.08994 * 117.50198 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1082 0.0000 4 6 3.5460 0.7046 -0.0059 5 6 3.5461 -0.7043 -0.0034 6 6 2.2595 -1.1080 0.0033 7 6 1.7820 -2.5374 0.0086 8 1 0.7834 -2.5952 0.4416 9 6 1.7644 -3.0871 -1.4332 10 6 2.2451 -4.5511 -1.2506 11 6 3.2818 -4.3979 -0.1097 12 7 2.7120 -3.3723 0.7829 13 6 2.9926 -3.2277 2.0932 14 8 2.4012 -2.3955 2.7533 15 7 3.9289 -4.0057 2.6716 16 6 4.3071 -3.7804 4.0690 17 6 5.4602 -4.7143 4.4420 18 6 5.2075 -6.1824 4.2143 19 1 6.0119 -6.8242 3.8864 20 6 3.9495 -6.7060 4.4244 21 7 2.9550 -5.9136 4.7601 22 14 3.6578 -8.5411 4.2324 23 1 3.8856 -9.2175 5.5346 24 1 2.2597 -8.7764 3.7902 25 1 4.5959 -9.0882 3.2195 26 6 6.3250 -4.3241 5.6424 27 6 6.8846 -4.2002 4.2230 28 1 -0.3633 0.0903 1.0237 29 1 -0.3633 0.8412 -0.5902 30 1 -0.3633 -0.9318 -0.4335 31 1 1.9171 2.1325 -0.0004 32 1 4.4165 1.3438 -0.0118 33 1 4.4166 -1.3435 -0.0064 34 1 2.4529 -2.5318 -2.0701 35 1 0.7551 -3.0611 -1.8440 36 1 2.7168 -4.9237 -2.1598 37 1 1.4223 -5.1980 -0.9464 38 1 4.2391 -4.0634 -0.5095 39 1 3.4030 -5.3405 0.4240 40 1 4.3494 -4.7173 2.1640 41 1 4.6219 -2.7449 4.1978 42 1 3.4521 -3.9833 4.7140 43 1 2.0879 -6.2895 4.9787 44 1 6.0722 -3.4025 6.1666 45 1 6.7115 -5.1294 6.2672 46 1 7.6389 -4.9240 3.9145 47 1 7.0001 -3.1971 3.8128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366807326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:22 Heat of formation + Delta-G solvation = 60.354002 kcal Electronic energy + Delta-G solvation = -27841.646682 eV Core-core repulsion = 24219.636859 eV Total energy + Delta-G solvation = -3622.009823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14630 -39.33050 -37.32231 -36.30652 -32.95401 -32.67151 -32.16069 -30.98635 -30.46379 -26.82222 -26.21423 -25.92348 -25.18170 -22.86752 -21.26401 -21.18224 -20.38683 -19.66583 -19.17863 -18.39363 -17.50599 -16.89135 -16.08589 -15.81353 -15.09020 -14.84354 -14.64273 -14.13144 -13.98438 -13.96437 -13.34751 -13.09790 -13.05760 -12.85727 -12.65534 -12.44009 -12.21301 -12.17045 -11.86991 -11.78455 -11.54548 -11.31389 -11.30618 -11.14826 -11.08297 -10.73367 -10.69238 -10.48160 -10.20845 -9.64150 -9.20180 -8.91593 -8.80661 -8.32219 -8.28844 -8.24079 -7.72906 -7.52949 -5.94640 -4.16418 2.44131 3.04093 3.22372 3.31148 3.31363 3.32197 3.48794 4.15647 4.31163 4.57087 4.67790 4.78824 4.87582 4.90328 5.09347 5.15579 5.25004 5.30088 5.33592 5.42028 5.52990 5.59356 5.71955 5.78751 5.86462 5.87017 5.92848 6.07562 6.09760 6.20463 6.38067 6.55754 6.59302 6.61789 6.68954 6.73156 6.82348 6.96354 7.15900 7.30768 7.32424 7.49012 7.61033 7.64189 7.81410 7.90975 8.07817 8.36979 8.80850 9.06300 9.46771 9.62787 10.92689 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.004355 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.165318 B = 6428.218732 C = 7293.521290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.445 5.445 3 C -0.023 4.023 4 C -0.200 4.200 5 C -0.179 4.179 6 C 0.025 3.975 7 C 0.229 3.771 8 H 0.070 0.930 9 C -0.122 4.122 10 C -0.130 4.130 11 C 0.101 3.899 12 N -0.632 5.632 13 C 0.721 3.279 14 O -0.597 6.597 15 N -0.698 5.698 16 C 0.182 3.818 17 C 0.037 3.963 18 C -0.495 4.495 19 H 0.060 0.940 20 C 0.074 3.926 21 N -0.864 5.864 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.273 1.273 26 C -0.198 4.198 27 C -0.211 4.211 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.394 0.606 41 H 0.017 0.983 42 H 0.112 0.888 43 H 0.261 0.739 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 7.186 -14.274 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.121 5.121 3 C -0.152 4.152 4 C -0.225 4.225 5 C -0.203 4.203 6 C -0.087 4.087 7 C 0.123 3.877 8 H 0.088 0.912 9 C -0.160 4.160 10 C -0.168 4.168 11 C -0.023 4.023 12 N -0.372 5.372 13 C 0.423 3.577 14 O -0.476 6.476 15 N -0.349 5.349 16 C 0.059 3.941 17 C 0.036 3.964 18 C -0.533 4.533 19 H 0.078 0.922 20 C -0.130 4.130 21 N -0.500 5.500 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.198 1.198 26 C -0.237 4.237 27 C -0.248 4.248 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.174 0.826 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.228 0.772 41 H 0.035 0.965 42 H 0.129 0.871 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.280 7.807 -13.648 16.586 hybrid contribution 0.139 -1.234 -0.029 1.243 sum -5.140 6.573 -13.677 16.021 Atomic orbital electron populations 1.21942 0.78028 1.03609 1.03216 1.43741 1.05685 1.05697 1.57008 1.21626 0.90594 0.90948 1.12048 1.20801 0.95716 0.95147 1.10844 1.20474 0.95208 0.94636 1.09999 1.20496 0.90630 0.88264 1.09354 1.19416 0.92757 0.84457 0.91075 0.91207 1.22693 1.02269 0.96268 0.94773 1.22758 0.99218 0.96291 0.98568 1.22214 0.96460 0.92372 0.91249 1.47473 1.48236 1.33836 1.07655 1.15432 0.80836 0.82153 0.79286 1.90835 1.54876 1.40149 1.61752 1.44825 1.40665 1.35031 1.14405 1.20961 0.99066 0.93130 0.80951 1.19245 0.86292 0.94860 0.95999 1.20506 0.95051 0.91119 1.46603 0.92178 1.25004 0.95710 0.97694 0.94595 1.69895 1.02058 1.33510 1.44575 0.86606 0.77390 0.85558 0.78571 1.20591 1.21265 1.19827 1.22934 1.08672 1.01101 0.91000 1.22932 1.01026 1.00192 1.00685 0.90992 0.90329 0.90150 0.82646 0.85214 0.85534 0.90069 0.90423 0.89923 0.90561 0.91828 0.90346 0.77212 0.96485 0.87070 0.92799 0.91494 0.90270 0.90733 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.81 59.85 0.65 1.39 16 2 N -0.44 -6.31 3.15 -119.90 -0.38 -6.69 16 3 C -0.02 -0.32 11.44 -16.75 -0.19 -0.51 16 4 C -0.20 -3.07 10.86 -39.78 -0.43 -3.51 16 5 C -0.18 -3.04 10.22 -39.78 -0.41 -3.44 16 6 C 0.02 0.40 5.15 -81.79 -0.42 -0.02 16 7 C 0.23 3.47 2.86 -68.11 -0.19 3.27 16 8 H 0.07 1.11 7.39 -51.93 -0.38 0.73 16 9 C -0.12 -1.31 6.46 -24.90 -0.16 -1.47 16 10 C -0.13 -1.37 7.08 -24.58 -0.17 -1.54 16 11 C 0.10 1.40 6.53 -2.53 -0.02 1.38 16 12 N -0.63 -11.15 2.74 -170.01 -0.47 -11.61 16 13 C 0.72 16.23 8.11 -86.92 -0.70 15.52 16 14 O -0.60 -15.72 16.30 5.30 0.09 -15.63 16 15 N -0.70 -15.88 5.23 -65.22 -0.34 -16.22 16 16 C 0.18 4.54 4.61 -4.04 -0.02 4.52 16 17 C 0.04 0.89 2.05 -155.66 -0.32 0.57 16 18 C -0.50 -12.66 8.35 -34.44 -0.29 -12.95 16 19 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 20 C 0.07 1.91 5.35 -17.82 -0.10 1.81 16 21 N -0.86 -23.33 10.22 55.43 0.57 -22.76 16 22 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.20 -4.45 9.96 -26.69 -0.27 -4.72 16 27 C -0.21 -4.53 9.93 -26.69 -0.27 -4.80 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.70 7.30 -51.93 -0.38 0.32 16 31 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 34 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.15 7.39 -51.93 -0.38 0.77 16 40 H 0.39 8.55 6.52 -40.82 -0.27 8.28 16 41 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 42 H 0.11 3.14 5.83 -51.93 -0.30 2.84 16 43 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 44 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 46 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 47 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -32.00 380.36 -10.71 -42.72 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -7.59 Total: 13.92 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -3.31 Total: -4.48 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.62 Total: -57.28 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.09 Total: -15.63 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.00 -10.71 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366807326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.070 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds