Wall clock time and date at job start Tue Mar 31 2020 11:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36346 * 125.63108 * 2 1 4 4 C 1.34850 * 108.21388 * 180.26336 * 3 2 1 5 5 C 1.40889 * 107.41989 * 359.73420 * 4 3 2 6 6 C 1.34850 * 107.41699 * 0.02562 * 5 4 3 7 7 C 1.50702 * 125.89161 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.99626 * 155.27803 * 7 6 5 9 9 C 1.54317 * 109.76976 * 276.43101 * 7 6 5 10 10 C 1.55161 * 102.86071 * 141.88613 * 9 7 6 11 11 C 1.54914 * 101.57994 * 324.30503 * 10 9 7 12 12 N 1.47022 * 109.88239 * 34.18168 * 7 6 5 13 13 C 1.34780 * 125.64868 * 61.67959 * 12 7 6 14 14 O 1.21578 * 119.99905 * 4.17328 * 13 12 7 15 15 N 1.34775 * 119.99581 * 184.17916 * 13 12 7 16 16 C 1.46505 * 119.99515 * 175.32313 * 15 13 12 17 17 C 1.53001 * 109.46821 * 184.60055 * 16 15 13 18 18 C 1.50698 * 115.55481 * 304.43703 * 17 16 15 19 19 H 1.08001 * 119.99834 * 144.28030 * 18 17 16 20 20 C 1.37876 * 119.99642 * 324.28320 * 18 17 16 21 21 N 1.31515 * 120.00350 * 3.32695 * 20 18 17 22 22 Si 1.86805 * 119.99635 * 183.33309 * 20 18 17 23 23 H 1.48497 * 109.47174 * 89.99964 * 22 20 18 24 24 H 1.48504 * 109.46839 * 209.99914 * 22 20 18 25 25 H 1.48498 * 109.47260 * 329.99456 * 22 20 18 26 26 C 1.53007 * 117.49342 * 158.76340 * 17 16 15 27 27 C 1.53003 * 117.49336 * 90.10781 * 17 16 15 28 28 H 1.08998 * 109.47247 * 275.04253 * 1 2 3 29 29 H 1.08994 * 109.46895 * 35.05129 * 1 2 3 30 30 H 1.09001 * 109.46683 * 155.04801 * 1 2 3 31 31 H 1.07999 * 125.89156 * 359.97438 * 3 2 1 32 32 H 1.07999 * 126.28948 * 179.71308 * 4 3 2 33 33 H 1.07998 * 126.29083 * 180.02562 * 5 4 3 34 34 H 1.08996 * 110.92712 * 23.47371 * 9 7 6 35 35 H 1.08996 * 110.74312 * 260.21201 * 9 7 6 36 36 H 1.08996 * 111.00521 * 206.22675 * 10 9 7 37 37 H 1.08996 * 111.03696 * 82.38714 * 10 9 7 38 38 H 1.09003 * 110.36294 * 278.16698 * 11 10 9 39 39 H 1.08997 * 110.45869 * 155.89796 * 11 10 9 40 40 H 0.97002 * 120.00273 * 355.04189 * 15 13 12 41 41 H 1.08998 * 109.46985 * 304.60492 * 16 15 13 42 42 H 1.09003 * 109.46839 * 64.60701 * 16 15 13 43 43 H 0.97003 * 120.00134 * 185.00951 * 21 20 18 44 44 H 1.09002 * 117.49929 * 0.02562 * 26 17 16 45 45 H 1.09000 * 117.49395 * 145.02429 * 26 17 16 46 46 H 1.08997 * 117.49634 * 214.97626 * 27 17 16 47 47 H 1.08994 * 117.50198 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1082 0.0000 4 6 3.5460 0.7046 -0.0059 5 6 3.5461 -0.7043 -0.0034 6 6 2.2595 -1.1080 0.0033 7 6 1.7820 -2.5374 0.0086 8 1 0.7834 -2.5952 0.4416 9 6 1.7644 -3.0871 -1.4332 10 6 2.2451 -4.5511 -1.2506 11 6 3.2818 -4.3979 -0.1097 12 7 2.7120 -3.3723 0.7829 13 6 2.9926 -3.2277 2.0932 14 8 2.4012 -2.3955 2.7533 15 7 3.9289 -4.0057 2.6716 16 6 4.3071 -3.7804 4.0690 17 6 5.4602 -4.7143 4.4420 18 6 5.2075 -6.1824 4.2143 19 1 6.0119 -6.8242 3.8864 20 6 3.9495 -6.7060 4.4244 21 7 2.9550 -5.9136 4.7601 22 14 3.6578 -8.5411 4.2324 23 1 3.8856 -9.2175 5.5346 24 1 2.2597 -8.7764 3.7902 25 1 4.5959 -9.0882 3.2195 26 6 6.3250 -4.3241 5.6424 27 6 6.8846 -4.2002 4.2230 28 1 -0.3633 0.0903 1.0237 29 1 -0.3633 0.8412 -0.5902 30 1 -0.3633 -0.9318 -0.4335 31 1 1.9171 2.1325 -0.0004 32 1 4.4165 1.3438 -0.0118 33 1 4.4166 -1.3435 -0.0064 34 1 2.4529 -2.5318 -2.0701 35 1 0.7551 -3.0611 -1.8440 36 1 2.7168 -4.9237 -2.1598 37 1 1.4223 -5.1980 -0.9464 38 1 4.2391 -4.0634 -0.5095 39 1 3.4030 -5.3405 0.4240 40 1 4.3494 -4.7173 2.1640 41 1 4.6219 -2.7449 4.1978 42 1 3.4521 -3.9833 4.7140 43 1 2.0879 -6.2895 4.9787 44 1 6.0722 -3.4025 6.1666 45 1 6.7115 -5.1294 6.2672 46 1 7.6389 -4.9240 3.9145 47 1 7.0001 -3.1971 3.8128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366807326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:21 Heat of formation + Delta-G solvation = 42.703403 kcal Electronic energy + Delta-G solvation = -27842.412069 eV Core-core repulsion = 24219.636859 eV Total energy + Delta-G solvation = -3622.775210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.29173 -40.83889 -38.90783 -38.00199 -34.77826 -34.12561 -33.68762 -32.27788 -31.62581 -27.93715 -27.81355 -27.15820 -27.06709 -24.21075 -22.96742 -22.25580 -21.59209 -21.10205 -20.96972 -19.82935 -18.98275 -18.10536 -17.88126 -17.15057 -16.74391 -16.24891 -16.07473 -15.71975 -15.63897 -15.04529 -14.92306 -14.50216 -14.28160 -14.10609 -13.90138 -13.76313 -13.66207 -13.32132 -13.24809 -13.16014 -12.93127 -12.88405 -12.78451 -12.53864 -12.29950 -12.28404 -12.13796 -12.04244 -11.65125 -11.51140 -11.07068 -10.84278 -10.68799 -10.16023 -9.89192 -9.45122 -9.33244 -8.82523 -7.91260 -6.19138 1.29006 1.43339 1.46891 1.55148 1.81410 2.15359 2.20880 2.42029 2.46278 3.02212 3.38139 3.61080 3.66430 3.75807 3.87046 4.04154 4.14996 4.20713 4.27499 4.34354 4.41304 4.53738 4.56680 4.66734 4.70710 4.76459 4.76648 4.79934 4.80635 4.90089 4.94820 4.98474 5.07630 5.10962 5.24537 5.31174 5.41553 5.42594 5.52384 5.55126 5.60958 5.98927 6.00322 6.11055 6.26177 6.37055 6.40146 6.58045 6.83137 7.32606 7.46320 7.87012 8.94082 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.004355 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.165318 B = 6428.218732 C = 7293.521290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.449 5.449 3 C -0.016 4.016 4 C -0.227 4.227 5 C -0.209 4.209 6 C 0.012 3.988 7 C 0.221 3.779 8 H 0.058 0.942 9 C -0.107 4.107 10 C -0.117 4.117 11 C 0.090 3.910 12 N -0.630 5.630 13 C 0.716 3.284 14 O -0.644 6.644 15 N -0.696 5.696 16 C 0.197 3.803 17 C 0.009 3.991 18 C -0.502 4.502 19 H 0.060 0.940 20 C 0.035 3.965 21 N -0.891 5.891 22 Si 0.952 3.048 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.262 1.262 26 C -0.198 4.198 27 C -0.186 4.186 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.192 0.808 32 H 0.141 0.859 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.003 0.997 42 H 0.076 0.924 43 H 0.255 0.745 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 6.824 -16.638 18.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.125 5.125 3 C -0.146 4.146 4 C -0.251 4.251 5 C -0.233 4.233 6 C -0.101 4.101 7 C 0.115 3.885 8 H 0.076 0.924 9 C -0.145 4.145 10 C -0.155 4.155 11 C -0.032 4.032 12 N -0.369 5.369 13 C 0.418 3.582 14 O -0.527 6.527 15 N -0.347 5.347 16 C 0.072 3.928 17 C 0.008 3.992 18 C -0.539 4.539 19 H 0.079 0.921 20 C -0.167 4.167 21 N -0.528 5.528 22 Si 0.778 3.222 23 H -0.208 1.208 24 H -0.217 1.217 25 H -0.186 1.186 26 C -0.237 4.237 27 C -0.223 4.223 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.209 0.791 32 H 0.158 0.842 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.233 0.767 41 H 0.022 0.978 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.579 7.423 -16.072 18.562 hybrid contribution 0.245 -1.056 0.722 1.302 sum -5.334 6.367 -15.350 17.454 Atomic orbital electron populations 1.22235 0.75675 1.05947 1.03538 1.44058 1.07248 1.05177 1.55985 1.22195 0.90110 0.92352 1.09962 1.21073 0.97208 0.94705 1.12124 1.20538 0.95344 0.95578 1.11887 1.20603 0.90815 0.89179 1.09551 1.19751 0.91310 0.84222 0.93200 0.92361 1.22681 1.04271 0.95894 0.91652 1.22765 0.98245 0.96232 0.98223 1.22508 0.98223 0.90757 0.91693 1.47480 1.48104 1.34805 1.06464 1.15623 0.80372 0.81473 0.80761 1.90780 1.56392 1.41914 1.63594 1.44670 1.40988 1.35350 1.13713 1.20581 0.98065 0.92474 0.81633 1.19285 0.87373 0.94416 0.98080 1.20684 0.95116 0.91738 1.46379 0.92143 1.25634 0.95447 1.01232 0.94369 1.70093 1.02114 1.34875 1.45743 0.85654 0.77052 0.81053 0.78464 1.20799 1.21667 1.18591 1.22961 1.07987 1.01362 0.91341 1.22909 0.99163 1.00752 0.99513 0.91872 0.86834 0.88866 0.79122 0.84160 0.87193 0.89536 0.87427 0.86567 0.90316 0.90737 0.91480 0.76727 0.97841 0.90629 0.93479 0.90963 0.90042 0.89470 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.21 10.81 127.77 1.38 2.59 16 2 N -0.45 -12.22 3.15 -533.24 -1.68 -13.90 16 3 C -0.02 -0.42 11.44 83.21 0.95 0.53 16 4 C -0.23 -6.95 10.86 22.14 0.24 -6.71 16 5 C -0.21 -7.25 10.22 22.14 0.23 -7.02 16 6 C 0.01 0.38 5.15 41.08 0.21 0.59 16 7 C 0.22 6.56 2.86 44.59 0.13 6.69 16 8 H 0.06 1.85 7.39 -2.39 -0.02 1.83 16 9 C -0.11 -2.02 6.46 31.78 0.21 -1.82 16 10 C -0.12 -2.12 7.08 31.99 0.23 -1.89 16 11 C 0.09 2.44 6.53 86.86 0.57 3.00 16 12 N -0.63 -22.52 2.74 -810.05 -2.22 -24.74 16 13 C 0.72 33.48 8.11 179.05 1.45 34.93 16 14 O -0.64 -35.55 16.30 -3.96 -0.06 -35.62 16 15 N -0.70 -32.79 5.23 -478.53 -2.50 -35.29 16 16 C 0.20 10.20 4.61 86.38 0.40 10.60 16 17 C 0.01 0.45 2.05 -52.92 -0.11 0.34 16 18 C -0.50 -25.62 8.35 25.60 0.21 -25.41 16 19 H 0.06 3.03 7.82 -2.91 -0.02 3.01 16 20 C 0.03 1.78 5.35 84.65 0.45 2.24 16 21 N -0.89 -49.42 10.22 21.45 0.22 -49.20 16 22 Si 0.95 41.17 29.54 68.60 2.03 43.19 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 26 C -0.20 -8.83 9.96 30.62 0.30 -8.53 16 27 C -0.19 -7.82 9.93 30.62 0.30 -7.52 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.43 7.30 -2.39 -0.02 1.42 16 31 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.09 1.60 7.85 -2.39 -0.02 1.58 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 1.95 7.39 -2.39 -0.02 1.94 16 40 H 0.40 17.72 6.52 -92.71 -0.60 17.11 16 41 H 0.00 0.18 8.10 -2.39 -0.02 0.16 16 42 H 0.08 4.50 5.83 -2.39 -0.01 4.49 16 43 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 44 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 46 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 47 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -72.17 380.36 3.29 -68.88 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: 0.35 Total: 44.06 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 7.16 Total: 2.61 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -6.18 Total: -123.13 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.06 Total: -35.62 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -72.17 3.29 -68.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366807326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.581 kcal (2) G-P(sol) polarization free energy of solvation -72.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds