Wall clock time and date at job start Tue Mar 31 2020 11:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 120.00196 * 2 1 4 4 O 1.21587 * 120.00149 * 0.02562 * 3 2 1 5 5 N 1.34783 * 120.00047 * 179.97438 * 3 2 1 6 6 C 1.46504 * 119.99784 * 179.97438 * 5 3 2 7 7 C 1.53123 * 109.51732 * 155.00076 * 6 5 3 8 8 C 1.53043 * 109.27447 * 177.55867 * 7 6 5 9 9 N 1.46840 * 109.52333 * 300.82666 * 8 7 6 10 10 C 1.46908 * 110.99974 * 185.84090 * 9 8 7 11 11 C 1.50695 * 109.47144 * 169.99558 * 10 9 8 12 12 C 1.38642 * 119.74679 * 90.00514 * 11 10 9 13 13 C 1.37614 * 120.24874 * 180.02562 * 12 11 10 14 14 C 1.40719 * 119.74423 * 359.97438 * 13 12 11 15 15 C 1.41395 * 120.24714 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99748 * 335.60207 * 15 14 13 17 17 C 1.39938 * 120.00091 * 155.87285 * 15 14 13 18 18 N 1.30819 * 120.00176 * 342.02811 * 17 15 14 19 19 Si 1.86802 * 120.00037 * 162.02561 * 17 15 14 20 20 H 1.48500 * 109.47127 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47287 * 120.00096 * 19 17 15 22 22 H 1.48498 * 109.47059 * 240.00299 * 19 17 15 23 23 C 1.40718 * 119.51234 * 0.28541 * 14 13 12 24 24 C 1.37623 * 119.74436 * 359.46344 * 23 14 13 25 25 C 1.46845 * 111.20316 * 61.74168 * 9 8 7 26 26 C 1.53032 * 109.52049 * 298.25632 * 25 9 8 27 27 H 1.09004 * 109.46751 * 60.00145 * 1 2 3 28 28 H 1.09004 * 109.47387 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47212 * 300.00119 * 1 2 3 30 30 H 0.97009 * 120.00146 * 179.97438 * 2 1 3 31 31 H 0.96997 * 119.99989 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.57521 * 34.85084 * 6 5 3 33 33 H 1.09005 * 109.49968 * 57.62463 * 7 6 5 34 34 H 1.08997 * 109.53659 * 297.52180 * 7 6 5 35 35 H 1.09000 * 109.45880 * 180.80545 * 8 7 6 36 36 H 1.09001 * 109.45026 * 60.83744 * 8 7 6 37 37 H 1.09005 * 109.46924 * 49.99290 * 10 9 8 38 38 H 1.09006 * 109.46790 * 289.99985 * 10 9 8 39 39 H 1.08003 * 119.87748 * 0.02562 * 12 11 10 40 40 H 1.07997 * 120.13310 * 179.97438 * 13 12 11 41 41 H 0.97005 * 120.00336 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.12906 * 179.69972 * 23 14 13 43 43 H 1.07998 * 119.87902 * 180.28054 * 24 23 14 44 44 H 1.09000 * 109.46221 * 58.26924 * 25 9 8 45 45 H 1.08998 * 109.46297 * 178.23983 * 25 9 8 46 46 H 1.08998 * 109.50829 * 299.23784 * 26 25 9 47 47 H 1.09004 * 109.50579 * 179.11722 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.2192 2.4358 0.0000 7 6 5.6076 2.2253 0.6106 8 6 6.3899 3.5393 0.5517 9 7 6.5108 3.9763 -0.8450 10 6 7.3736 5.1604 -0.9534 11 6 7.6733 5.4323 -2.4050 12 6 6.8360 6.2600 -3.1370 13 6 7.0997 6.5150 -4.4633 14 6 8.2245 5.9323 -5.0760 15 6 8.5059 6.1874 -6.4380 16 1 7.7104 6.4771 -7.1086 17 6 9.8139 6.0590 -6.9183 18 7 10.8201 6.0533 -6.0823 19 14 10.1234 5.8957 -8.7533 20 1 8.8282 5.9308 -9.4788 21 1 10.9783 7.0196 -9.2131 22 1 10.8098 4.6076 -9.0268 23 6 9.0643 5.0894 -4.3248 24 6 8.7842 4.8527 -2.9983 25 6 5.1916 4.2303 -1.4380 26 6 4.3736 2.9370 -1.4386 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.9501 -0.8401 0.0004 31 1 3.9717 0.3270 0.0005 32 1 3.6717 3.1739 0.5861 33 1 6.1403 1.4590 0.0474 34 1 5.5051 1.9089 1.6486 35 1 7.3841 3.3892 0.9726 36 1 5.8634 4.3013 1.1264 37 1 8.3055 4.9811 -0.4172 38 1 6.8648 6.0215 -0.5198 39 1 5.9735 6.7065 -2.6645 40 1 6.4460 7.1597 -5.0319 41 1 11.7269 5.9639 -6.4152 42 1 9.9276 4.6331 -4.7863 43 1 9.4298 4.2097 -2.4185 44 1 4.6709 4.9892 -0.8539 45 1 5.3155 4.5822 -2.4622 46 1 4.8869 2.1819 -2.0339 47 1 3.3888 3.1294 -1.8645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412055738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:12 Heat of formation + Delta-G solvation = -14.816742 kcal Electronic energy + Delta-G solvation = -26104.572137 eV Core-core repulsion = 22479.302666 eV Total energy + Delta-G solvation = -3625.269471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.29930 -38.83349 -37.37001 -35.28095 -34.63043 -33.67462 -31.79714 -30.76729 -29.76495 -29.15411 -27.16846 -26.14329 -24.00101 -23.09345 -22.19473 -20.94362 -20.92162 -19.98737 -19.64571 -18.58050 -17.26150 -16.80336 -15.67427 -15.50635 -15.29849 -14.94401 -14.75037 -14.59158 -14.30167 -13.93648 -13.75951 -13.48711 -13.36616 -13.02209 -12.87954 -12.51828 -12.48747 -12.07875 -11.91483 -11.72949 -11.50491 -11.18559 -11.11343 -11.03611 -10.89806 -10.77128 -10.53997 -10.36850 -10.30269 -10.21685 -9.55297 -9.45103 -9.33750 -9.10396 -8.94808 -7.92520 -7.39656 -7.24864 -6.73633 -4.31412 2.54846 2.75808 3.07855 3.08525 3.11320 3.14189 3.18816 3.95187 4.06133 4.27977 4.67055 4.74618 4.90516 4.94474 5.10574 5.26471 5.34332 5.42784 5.50397 5.59182 5.65462 5.71303 5.74021 5.84074 5.91006 5.97335 6.08022 6.13162 6.19311 6.24782 6.34247 6.39701 6.43887 6.48665 6.50639 6.74138 6.99733 7.10225 7.33156 7.37440 7.49067 7.49828 7.65847 7.83110 7.92224 8.09614 8.18747 8.34061 8.45740 8.68541 8.93297 9.01807 10.20990 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.002487 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.189914 B =11255.670084 C =12005.072582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.754 5.754 3 C 0.701 3.299 4 O -0.590 6.590 5 N -0.740 5.740 6 C 0.163 3.837 7 C -0.120 4.120 8 C 0.058 3.942 9 N -0.532 5.532 10 C 0.120 3.880 11 C -0.206 4.206 12 C -0.085 4.085 13 C -0.227 4.227 14 C 0.112 3.888 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.906 3.094 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.272 1.272 23 C -0.168 4.168 24 C -0.079 4.079 25 C 0.058 3.942 26 C -0.124 4.124 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.396 0.604 31 H 0.394 0.606 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.029 0.971 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.279 0.721 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.026 0.974 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 -12.594 12.407 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.410 5.410 3 C 0.401 3.599 4 O -0.467 6.467 5 N -0.394 5.394 6 C 0.058 3.942 7 C -0.159 4.159 8 C -0.071 4.071 9 N -0.256 5.256 10 C -0.006 4.006 11 C -0.208 4.208 12 C -0.104 4.104 13 C -0.246 4.246 14 C 0.109 3.891 15 C -0.492 4.492 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.419 5.419 19 Si 0.730 3.270 20 H -0.184 1.184 21 H -0.201 1.201 22 H -0.197 1.197 23 C -0.187 4.187 24 C -0.098 4.098 25 C -0.070 4.070 26 C -0.163 4.163 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.229 0.771 31 H 0.228 0.772 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.104 0.896 44 H 0.044 0.956 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.911 -11.976 12.171 20.263 hybrid contribution 0.307 -0.234 -0.410 0.563 sum -10.604 -12.209 11.761 19.996 Atomic orbital electron populations 1.21369 0.78296 1.01786 1.02277 1.44940 1.07729 1.07186 1.81149 1.16011 0.81959 0.84214 0.77746 1.90937 1.67876 1.30281 1.57620 1.45256 1.04432 1.09822 1.79879 1.20945 0.91427 0.84509 0.97315 1.21850 0.94427 0.99066 1.00538 1.21987 0.99710 0.95157 0.90240 1.62067 1.12650 1.35646 1.15273 1.20719 0.95244 0.89087 0.95513 1.18830 1.00122 1.07653 0.94155 1.20362 0.97265 0.98285 0.94475 1.20936 1.02671 1.06525 0.94503 1.17624 0.90249 0.88296 0.92905 1.19616 0.93780 1.41169 0.94672 0.90529 1.25900 0.95902 0.92269 1.00079 1.69838 1.00068 1.35281 1.36683 0.86309 0.79348 0.78601 0.82739 1.18434 1.20055 1.19726 1.21301 1.02349 1.01558 0.93498 1.20474 0.95864 0.98329 0.95130 1.22068 0.88070 0.95245 1.01635 1.21978 0.99981 0.98254 0.96088 0.92379 0.90811 0.92495 0.77091 0.77212 0.89884 0.90504 0.91417 0.90530 0.95263 0.91616 0.95867 0.89897 0.89210 0.91003 0.86595 0.89554 0.95587 0.88881 0.90989 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.75 10.70 59.85 0.64 1.39 16 2 N -0.75 -6.06 5.72 -72.07 -0.41 -6.47 16 3 C 0.70 8.41 8.54 -86.92 -0.74 7.66 16 4 O -0.59 -9.79 16.01 5.29 0.08 -9.71 16 5 N -0.74 -7.38 5.09 -58.55 -0.30 -7.67 16 6 C 0.16 1.94 2.52 -67.81 -0.17 1.76 16 7 C -0.12 -1.24 5.57 -26.65 -0.15 -1.39 16 8 C 0.06 0.71 5.46 -3.83 -0.02 0.69 16 9 N -0.53 -8.32 4.65 -236.11 -1.10 -9.42 16 10 C 0.12 2.10 5.11 -4.97 -0.03 2.07 16 11 C -0.21 -4.41 4.91 -104.33 -0.51 -4.92 16 12 C -0.09 -1.89 7.83 -39.66 -0.31 -2.20 16 13 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 14 C 0.11 3.00 5.57 -106.82 -0.60 2.40 16 15 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 17 C 0.08 1.92 5.14 -17.35 -0.09 1.83 16 18 N -0.79 -20.60 10.96 55.55 0.61 -19.99 16 19 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 20 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 24 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 25 C 0.06 0.92 5.15 -3.84 -0.02 0.90 16 26 C -0.12 -1.74 5.67 -26.66 -0.15 -1.89 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.40 1.88 8.84 -40.82 -0.36 1.52 16 31 H 0.39 2.73 8.62 -40.82 -0.35 2.38 16 32 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.87 8.02 -51.93 -0.42 0.46 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.08 7.93 -51.93 -0.41 0.67 16 38 H 0.02 0.39 8.06 -51.93 -0.42 -0.02 16 39 H 0.08 1.66 7.95 -52.48 -0.42 1.24 16 40 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 42 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 43 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 1.70 5.74 -51.93 -0.30 1.40 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -31.09 377.21 -11.64 -42.73 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.59 Total: 8.38 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -3.59 Total: -17.30 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -1.20 Total: -43.55 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.09 -11.64 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412055738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.916 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds