Wall clock time and date at job start Tue Mar 31 2020 11:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 120.00196 * 2 1 4 4 O 1.21587 * 120.00149 * 0.02562 * 3 2 1 5 5 N 1.34783 * 120.00047 * 179.97438 * 3 2 1 6 6 C 1.46504 * 119.99784 * 179.97438 * 5 3 2 7 7 C 1.53123 * 109.51732 * 155.00076 * 6 5 3 8 8 C 1.53043 * 109.27447 * 177.55867 * 7 6 5 9 9 N 1.46840 * 109.52333 * 300.82666 * 8 7 6 10 10 C 1.46908 * 110.99974 * 185.84090 * 9 8 7 11 11 C 1.50695 * 109.47144 * 169.99558 * 10 9 8 12 12 C 1.38642 * 119.74679 * 90.00514 * 11 10 9 13 13 C 1.37614 * 120.24874 * 180.02562 * 12 11 10 14 14 C 1.40719 * 119.74423 * 359.97438 * 13 12 11 15 15 C 1.41395 * 120.24714 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99748 * 335.60207 * 15 14 13 17 17 C 1.39938 * 120.00091 * 155.87285 * 15 14 13 18 18 N 1.30819 * 120.00176 * 342.02811 * 17 15 14 19 19 Si 1.86802 * 120.00037 * 162.02561 * 17 15 14 20 20 H 1.48500 * 109.47127 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47287 * 120.00096 * 19 17 15 22 22 H 1.48498 * 109.47059 * 240.00299 * 19 17 15 23 23 C 1.40718 * 119.51234 * 0.28541 * 14 13 12 24 24 C 1.37623 * 119.74436 * 359.46344 * 23 14 13 25 25 C 1.46845 * 111.20316 * 61.74168 * 9 8 7 26 26 C 1.53032 * 109.52049 * 298.25632 * 25 9 8 27 27 H 1.09004 * 109.46751 * 60.00145 * 1 2 3 28 28 H 1.09004 * 109.47387 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47212 * 300.00119 * 1 2 3 30 30 H 0.97009 * 120.00146 * 179.97438 * 2 1 3 31 31 H 0.96997 * 119.99989 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.57521 * 34.85084 * 6 5 3 33 33 H 1.09005 * 109.49968 * 57.62463 * 7 6 5 34 34 H 1.08997 * 109.53659 * 297.52180 * 7 6 5 35 35 H 1.09000 * 109.45880 * 180.80545 * 8 7 6 36 36 H 1.09001 * 109.45026 * 60.83744 * 8 7 6 37 37 H 1.09005 * 109.46924 * 49.99290 * 10 9 8 38 38 H 1.09006 * 109.46790 * 289.99985 * 10 9 8 39 39 H 1.08003 * 119.87748 * 0.02562 * 12 11 10 40 40 H 1.07997 * 120.13310 * 179.97438 * 13 12 11 41 41 H 0.97005 * 120.00336 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.12906 * 179.69972 * 23 14 13 43 43 H 1.07998 * 119.87902 * 180.28054 * 24 23 14 44 44 H 1.09000 * 109.46221 * 58.26924 * 25 9 8 45 45 H 1.08998 * 109.46297 * 178.23983 * 25 9 8 46 46 H 1.08998 * 109.50829 * 299.23784 * 26 25 9 47 47 H 1.09004 * 109.50579 * 179.11722 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.2192 2.4358 0.0000 7 6 5.6076 2.2253 0.6106 8 6 6.3899 3.5393 0.5517 9 7 6.5108 3.9763 -0.8450 10 6 7.3736 5.1604 -0.9534 11 6 7.6733 5.4323 -2.4050 12 6 6.8360 6.2600 -3.1370 13 6 7.0997 6.5150 -4.4633 14 6 8.2245 5.9323 -5.0760 15 6 8.5059 6.1874 -6.4380 16 1 7.7104 6.4771 -7.1086 17 6 9.8139 6.0590 -6.9183 18 7 10.8201 6.0533 -6.0823 19 14 10.1234 5.8957 -8.7533 20 1 8.8282 5.9308 -9.4788 21 1 10.9783 7.0196 -9.2131 22 1 10.8098 4.6076 -9.0268 23 6 9.0643 5.0894 -4.3248 24 6 8.7842 4.8527 -2.9983 25 6 5.1916 4.2303 -1.4380 26 6 4.3736 2.9370 -1.4386 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.9501 -0.8401 0.0004 31 1 3.9717 0.3270 0.0005 32 1 3.6717 3.1739 0.5861 33 1 6.1403 1.4590 0.0474 34 1 5.5051 1.9089 1.6486 35 1 7.3841 3.3892 0.9726 36 1 5.8634 4.3013 1.1264 37 1 8.3055 4.9811 -0.4172 38 1 6.8648 6.0215 -0.5198 39 1 5.9735 6.7065 -2.6645 40 1 6.4460 7.1597 -5.0319 41 1 11.7269 5.9639 -6.4152 42 1 9.9276 4.6331 -4.7863 43 1 9.4298 4.2097 -2.4185 44 1 4.6709 4.9892 -0.8539 45 1 5.3155 4.5822 -2.4622 46 1 4.8869 2.1819 -2.0339 47 1 3.3888 3.1294 -1.8645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412055738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:12 Heat of formation + Delta-G solvation = -36.027807 kcal Electronic energy + Delta-G solvation = -26105.491918 eV Core-core repulsion = 22479.302666 eV Total energy + Delta-G solvation = -3626.189252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25121 -40.11974 -38.99340 -36.46358 -35.53475 -35.37837 -33.10492 -31.88245 -31.39220 -30.95181 -28.44088 -27.26864 -25.47522 -24.18104 -23.49203 -22.78389 -21.84585 -21.50559 -20.93691 -19.43689 -19.19143 -17.72849 -17.18240 -16.70363 -16.45378 -16.32227 -15.90947 -15.67942 -15.52027 -15.39242 -15.14390 -14.84597 -14.65302 -14.26379 -14.02142 -13.86943 -13.76569 -13.31346 -13.20633 -13.13650 -13.01910 -12.71449 -12.64638 -12.43695 -12.23458 -12.14240 -11.99254 -11.74552 -11.56364 -11.35088 -11.28731 -11.19001 -10.98480 -10.35846 -9.76523 -9.30517 -9.27539 -9.04533 -8.62100 -6.30661 0.97068 1.17877 1.37712 1.49805 1.53014 1.76698 2.15389 2.21559 2.68667 3.16523 3.36693 3.74832 3.83647 3.90044 4.13275 4.18331 4.34903 4.35313 4.45866 4.47609 4.55000 4.58826 4.63012 4.66676 4.69902 4.79688 4.84651 4.94962 4.97916 5.00918 5.08765 5.12440 5.15246 5.18594 5.31537 5.42137 5.50040 5.50899 5.57317 5.74101 5.98186 6.03222 6.12410 6.16388 6.32561 6.36381 6.42673 6.74245 6.97182 7.07421 7.13499 7.60772 8.35220 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.002487 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.189914 B =11255.670084 C =12005.072582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.739 5.739 3 C 0.693 3.307 4 O -0.641 6.641 5 N -0.727 5.727 6 C 0.170 3.830 7 C -0.109 4.109 8 C 0.055 3.945 9 N -0.539 5.539 10 C 0.125 3.875 11 C -0.191 4.191 12 C -0.084 4.084 13 C -0.245 4.245 14 C 0.079 3.921 15 C -0.503 4.503 16 H 0.070 0.930 17 C 0.035 3.965 18 N -0.825 5.825 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.263 1.263 23 C -0.191 4.191 24 C -0.083 4.083 25 C 0.062 3.938 26 C -0.115 4.115 27 H 0.041 0.959 28 H 0.114 0.886 29 H 0.046 0.954 30 H 0.415 0.585 31 H 0.413 0.587 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.033 0.967 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.287 0.713 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.026 0.974 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.792 -14.645 14.083 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.395 5.395 3 C 0.392 3.608 4 O -0.523 6.523 5 N -0.382 5.382 6 C 0.065 3.935 7 C -0.147 4.147 8 C -0.073 4.073 9 N -0.264 5.264 10 C -0.002 4.002 11 C -0.192 4.192 12 C -0.103 4.103 13 C -0.265 4.265 14 C 0.077 3.923 15 C -0.533 4.533 16 H 0.088 0.912 17 C -0.179 4.179 18 N -0.451 5.451 19 Si 0.801 3.199 20 H -0.185 1.185 21 H -0.190 1.190 22 H -0.187 1.187 23 C -0.210 4.210 24 C -0.102 4.102 25 C -0.066 4.066 26 C -0.155 4.155 27 H 0.060 0.940 28 H 0.132 0.868 29 H 0.065 0.935 30 H 0.251 0.749 31 H 0.249 0.751 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.900 -14.097 13.871 22.582 hybrid contribution 0.204 0.374 -0.774 0.884 sum -10.696 -13.723 13.097 21.777 Atomic orbital electron populations 1.21513 0.77537 1.04024 1.00999 1.44846 1.08228 1.06844 1.79598 1.16307 0.82410 0.84497 0.77547 1.90905 1.68980 1.32447 1.59959 1.45018 1.03894 1.10060 1.79192 1.20737 0.92511 0.84940 0.95356 1.21787 0.92583 0.98166 1.02146 1.22138 1.01184 0.96086 0.87908 1.61974 1.12069 1.34463 1.17860 1.20656 0.96654 0.90384 0.92501 1.19270 0.98421 1.05285 0.96248 1.20624 0.97942 0.98066 0.93645 1.21120 1.02562 1.07015 0.95808 1.17954 0.91436 0.89333 0.93624 1.19820 0.94714 1.43619 0.95129 0.91173 1.26726 0.95060 0.91285 1.04874 1.69881 1.00666 1.35768 1.38817 0.85194 0.79137 0.79043 0.76517 1.18470 1.18975 1.18720 1.21270 1.02323 1.02516 0.94897 1.20725 0.96679 0.98469 0.94288 1.21946 0.88661 0.96112 0.99915 1.21859 0.98483 0.97392 0.97728 0.94002 0.86777 0.93515 0.74855 0.75069 0.91773 0.89765 0.88638 0.88809 0.94843 0.89920 0.95037 0.87661 0.89171 0.90188 0.88325 0.87513 0.95594 0.91881 0.91313 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.28 10.70 127.77 1.37 2.65 16 2 N -0.74 -10.36 5.72 -500.20 -2.86 -13.22 16 3 C 0.69 15.79 8.54 179.06 1.53 17.32 16 4 O -0.64 -21.40 16.01 -3.99 -0.06 -21.46 16 5 N -0.73 -12.97 5.09 -457.42 -2.33 -15.30 16 6 C 0.17 3.75 2.52 45.07 0.11 3.86 16 7 C -0.11 -1.85 5.57 30.65 0.17 -1.68 16 8 C 0.05 1.16 5.46 86.33 0.47 1.64 16 9 N -0.54 -15.68 4.65 -900.92 -4.19 -19.86 16 10 C 0.12 4.05 5.11 85.55 0.44 4.49 16 11 C -0.19 -8.01 4.91 -19.67 -0.10 -8.10 16 12 C -0.08 -3.75 7.83 22.22 0.17 -3.58 16 13 C -0.25 -12.54 9.80 22.73 0.22 -12.32 16 14 C 0.08 4.40 5.57 -21.29 -0.12 4.29 16 15 C -0.50 -28.19 9.05 23.46 0.21 -27.97 16 16 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 17 C 0.04 1.82 5.14 85.26 0.44 2.26 16 18 N -0.83 -44.08 10.96 21.82 0.24 -43.84 16 19 Si 0.98 39.28 29.59 68.60 2.03 41.31 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 C -0.19 -10.24 8.70 22.73 0.20 -10.05 16 24 C -0.08 -3.84 9.67 22.22 0.21 -3.63 16 25 C 0.06 1.93 5.15 86.32 0.44 2.37 16 26 C -0.12 -3.17 5.67 30.64 0.17 -3.00 16 27 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.42 2.66 8.84 -92.70 -0.82 1.84 16 31 H 0.41 4.40 8.62 -92.71 -0.80 3.60 16 32 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 33 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.09 1.73 8.02 -2.39 -0.02 1.71 16 36 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 2.44 7.93 -2.38 -0.02 2.43 16 38 H 0.03 0.99 8.06 -2.38 -0.02 0.97 16 39 H 0.11 4.16 7.95 -2.91 -0.02 4.14 16 40 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 41 H 0.29 13.79 8.30 -92.70 -0.77 13.02 16 42 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 43 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 44 H 0.03 0.79 8.14 -2.39 -0.02 0.78 16 45 H 0.06 2.32 5.74 -2.39 -0.01 2.31 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -71.28 377.21 -1.86 -73.13 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.64 Total: 30.68 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 5.95 Total: -31.45 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -9.13 Total: -92.22 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.06 Total: -21.46 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -71.28 -1.86 -73.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412055738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.107 kcal (2) G-P(sol) polarization free energy of solvation -71.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds