Wall clock time and date at job start Tue Mar 31 2020 11:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99935 * 2 1 4 4 C 1.50704 * 109.47032 * 180.02562 * 3 2 1 5 5 C 1.38300 * 119.96183 * 269.97627 * 4 3 2 6 6 C 1.38261 * 120.14144 * 180.02562 * 5 4 3 7 7 C 1.38132 * 120.06578 * 359.67836 * 6 5 4 8 8 C 1.38849 * 119.93350 * 0.61908 * 7 6 5 9 9 N 1.39945 * 120.07335 * 179.67687 * 8 7 6 10 10 C 1.34771 * 119.99770 * 326.56275 * 9 8 7 11 11 O 1.21589 * 120.00596 * 354.70420 * 10 9 8 12 12 N 1.34777 * 119.99959 * 174.70259 * 10 9 8 13 13 C 1.46503 * 120.00220 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47107 * 270.00412 * 13 12 10 15 15 H 1.07994 * 120.00401 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99796 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00049 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99946 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47274 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47036 * 120.00031 * 18 16 14 21 21 H 1.48510 * 109.46947 * 239.99478 * 18 16 14 22 22 C 1.46501 * 120.00148 * 0.02562 * 12 10 9 23 23 C 1.53002 * 109.46887 * 270.00083 * 22 12 10 24 24 C 1.52998 * 117.49234 * 243.61787 * 23 22 12 25 25 C 1.52999 * 117.49695 * 174.99809 * 23 22 12 26 26 C 1.38096 * 119.96885 * 89.99699 * 4 3 2 27 27 H 1.08999 * 109.47313 * 59.99694 * 1 2 3 28 28 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47097 * 300.00130 * 1 2 3 30 30 H 1.00895 * 110.99932 * 123.95330 * 2 1 3 31 31 H 1.08997 * 109.47084 * 60.00514 * 3 2 1 32 32 H 1.09007 * 109.47524 * 299.99853 * 3 2 1 33 33 H 1.08006 * 119.93320 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.96981 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.03569 * 180.30146 * 7 6 5 36 36 H 0.96991 * 119.99974 * 146.56350 * 9 8 7 37 37 H 1.08998 * 109.47098 * 30.00488 * 13 12 10 38 38 H 1.08999 * 109.47105 * 150.00486 * 13 12 10 39 39 H 0.96999 * 119.99766 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47582 * 149.99580 * 22 12 10 41 41 H 1.09004 * 109.46634 * 29.99335 * 22 12 10 42 42 H 1.09000 * 115.54803 * 29.32717 * 23 22 12 43 43 H 1.09000 * 117.50235 * 359.97438 * 24 23 22 44 44 H 1.09007 * 117.49314 * 145.02215 * 24 23 22 45 45 H 1.09001 * 117.49789 * 214.97792 * 25 23 22 46 46 H 1.09003 * 117.50059 * 359.97438 * 25 23 22 47 47 H 1.07998 * 120.03288 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.1929 1.3131 1.1972 6 6 5.5750 1.2767 1.2010 7 6 6.2699 1.2517 0.0074 8 6 5.5793 1.2761 -1.1969 9 7 6.2806 1.2576 -2.4079 10 6 7.4804 1.8644 -2.5010 11 8 7.9100 2.5092 -1.5640 12 7 8.2040 1.7565 -3.6329 13 6 9.5080 2.4165 -3.7344 14 6 9.3252 3.8082 -4.2829 15 1 8.3368 4.1652 -4.5315 16 6 10.4202 4.6254 -4.4684 17 7 11.6240 4.1904 -4.1662 18 14 10.1936 6.3507 -5.1477 19 1 8.7518 6.5961 -5.4046 20 1 10.6968 7.3407 -4.1619 21 1 10.9524 6.4865 -6.4170 22 6 7.6862 0.9801 -4.7622 23 6 8.1445 -0.4740 -4.6342 24 6 9.0681 -1.0220 -5.7239 25 6 7.6086 -1.4764 -5.6583 26 6 4.1910 1.3129 -1.1972 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8305 -0.5261 0.7813 31 1 1.6460 1.8947 0.8900 32 1 1.6459 1.8949 -0.8900 33 1 3.6517 1.3274 2.1318 34 1 6.1118 1.2622 2.1381 35 1 7.3493 1.2184 0.0110 36 1 5.9031 0.8082 -3.1800 37 1 9.9648 2.4725 -2.7464 38 1 10.1535 1.8450 -4.4013 39 1 12.3942 4.7655 -4.2964 40 1 8.0636 1.3993 -5.6949 41 1 6.5968 1.0192 -4.7608 42 1 8.3006 -0.8298 -3.6157 43 1 9.3488 -0.3468 -6.5322 44 1 9.8322 -1.7386 -5.4224 45 1 7.4124 -2.4918 -5.3138 46 1 6.9291 -1.1000 -6.4231 47 1 3.6508 1.3279 -2.1323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415944279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:01 Heat of formation + Delta-G solvation = 32.507379 kcal Electronic energy + Delta-G solvation = -26276.081436 eV Core-core repulsion = 22652.864093 eV Total energy + Delta-G solvation = -3623.217343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29745 -38.82356 -37.28910 -36.17660 -34.54927 -34.16581 -32.49189 -31.32544 -29.51385 -27.74440 -26.75364 -25.99913 -23.85223 -23.26324 -22.21307 -22.15189 -21.26086 -20.64602 -19.13722 -17.78951 -17.00787 -16.47874 -16.14428 -15.94832 -15.30245 -15.07356 -14.83215 -14.66461 -14.64773 -14.16850 -14.01148 -13.72555 -13.46049 -12.94838 -12.61963 -12.52365 -12.37493 -12.30129 -12.14602 -11.94643 -11.56149 -11.41625 -11.37277 -11.21658 -10.96000 -10.88394 -10.64865 -10.30844 -10.13866 -10.00073 -9.76789 -9.58180 -9.27524 -8.79438 -8.58310 -8.42284 -7.92321 -7.56946 -6.03203 -4.07500 1.51658 1.55520 3.20355 3.30462 3.38395 3.43077 3.65546 3.92059 4.01713 4.28195 4.34151 4.49164 4.72849 4.89728 4.96176 5.05755 5.07057 5.15029 5.17792 5.22700 5.31249 5.32632 5.43630 5.54879 5.57167 5.57952 5.68624 5.72160 5.75551 5.91385 5.97061 6.05050 6.10674 6.25171 6.43545 6.51454 6.55275 6.63745 6.71579 6.84234 6.89119 7.07370 7.33733 7.38257 7.51793 7.69364 7.95159 8.24462 8.58701 8.93596 9.24987 9.57889 11.04706 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011982 B = 0.003339 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.260859 B = 8382.529517 C = 9614.311198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.690 5.690 3 C 0.101 3.899 4 C -0.070 4.070 5 C -0.143 4.143 6 C -0.099 4.099 7 C -0.120 4.120 8 C 0.185 3.815 9 N -0.696 5.696 10 C 0.698 3.302 11 O -0.567 6.567 12 N -0.603 5.603 13 C 0.262 3.738 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.143 3.857 23 C -0.169 4.169 24 C -0.172 4.172 25 C -0.182 4.182 26 C -0.134 4.134 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.020 0.980 30 H 0.343 0.657 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.402 0.598 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.262 0.738 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.579 -12.078 4.401 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.320 5.320 3 C -0.027 4.027 4 C -0.072 4.072 5 C -0.163 4.163 6 C -0.118 4.118 7 C -0.140 4.140 8 C 0.088 3.912 9 N -0.345 5.345 10 C 0.400 3.600 11 O -0.443 6.443 12 N -0.336 5.336 13 C 0.143 3.857 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.210 1.210 22 C 0.018 3.982 23 C -0.189 4.189 24 C -0.209 4.209 25 C -0.219 4.219 26 C -0.156 4.156 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.161 0.839 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.155 0.845 36 H 0.239 0.761 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.909 -11.581 4.306 20.942 hybrid contribution -0.352 1.053 0.052 1.111 sum -17.261 -10.529 4.358 20.683 Atomic orbital electron populations 1.22212 0.87810 1.01885 1.00399 1.60431 1.07418 1.13880 1.50316 1.20874 0.90911 0.89755 1.01202 1.19350 0.94261 1.00793 0.92753 1.20855 0.94324 1.04209 0.96907 1.20953 0.93832 0.99340 0.97686 1.21285 1.01406 1.00536 0.90821 1.17543 0.90353 0.97637 0.85653 1.43028 1.20464 1.58758 1.12276 1.15938 0.79939 0.79899 0.84202 1.90910 1.70471 1.44756 1.38128 1.47562 1.22074 1.52248 1.11763 1.19235 0.76493 0.91398 0.98622 1.21497 0.93473 0.98830 1.42646 0.92485 1.24917 0.95046 0.98475 0.95620 1.69943 0.98233 1.36832 1.48349 0.86463 0.78150 0.84439 0.78483 1.19851 1.20884 1.21006 1.20969 0.97152 0.88233 0.91813 1.22917 1.04931 0.95124 0.95901 1.22991 0.92834 1.03582 1.01475 1.22933 0.97506 0.99087 1.02392 1.20634 0.91924 1.04915 0.98142 0.91658 0.91390 0.96108 0.83921 0.94363 0.90232 0.86829 0.86051 0.84503 0.76137 0.93792 0.94617 0.92798 0.89367 0.91987 0.87910 0.88389 0.89118 0.89121 0.88821 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.70 60.06 0.64 0.83 16 2 N -0.69 -6.15 6.84 -122.42 -0.84 -6.98 16 3 C 0.10 0.97 5.81 -4.97 -0.03 0.94 16 4 C -0.07 -0.85 5.39 -104.65 -0.56 -1.41 16 5 C -0.14 -1.70 9.70 -39.55 -0.38 -2.09 16 6 C -0.10 -1.35 10.04 -39.61 -0.40 -1.75 16 7 C -0.12 -1.98 8.65 -39.39 -0.34 -2.32 16 8 C 0.18 2.96 6.28 -83.69 -0.53 2.44 16 9 N -0.70 -11.55 5.22 -14.22 -0.07 -11.62 16 10 C 0.70 14.87 8.02 -86.92 -0.70 14.17 16 11 O -0.57 -14.46 13.62 5.29 0.07 -14.39 16 12 N -0.60 -12.64 2.46 -180.80 -0.44 -13.08 16 13 C 0.26 6.78 5.16 -5.19 -0.03 6.75 16 14 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 18 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.14 2.28 5.50 -4.04 -0.02 2.26 16 23 C -0.17 -2.34 6.01 -90.62 -0.54 -2.89 16 24 C -0.17 -2.21 10.18 -26.73 -0.27 -2.48 16 25 C -0.18 -1.98 10.25 -26.73 -0.27 -2.26 16 26 C -0.13 -1.82 9.61 -39.39 -0.38 -2.20 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.02 0.13 8.14 -51.92 -0.42 -0.29 16 30 H 0.34 2.80 8.81 -39.29 -0.35 2.46 16 31 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.11 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.14 2.58 6.42 -52.49 -0.34 2.25 16 36 H 0.40 5.47 6.51 -40.82 -0.27 5.20 16 37 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.09 1.47 7.80 -51.93 -0.41 1.06 16 41 H 0.06 0.83 6.29 -51.93 -0.33 0.50 16 42 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.10 1.29 8.03 -51.93 -0.42 0.87 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -32.91 391.24 -11.42 -44.33 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.51 Total: 8.20 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -4.23 Total: -3.53 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.62 Total: -57.47 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.07 Total: -14.39 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.91 -11.42 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415944279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.834 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds