Wall clock time and date at job start Tue Mar 31 2020 11:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99935 * 2 1 4 4 C 1.50704 * 109.47032 * 180.02562 * 3 2 1 5 5 C 1.38300 * 119.96183 * 269.97627 * 4 3 2 6 6 C 1.38261 * 120.14144 * 180.02562 * 5 4 3 7 7 C 1.38132 * 120.06578 * 359.67836 * 6 5 4 8 8 C 1.38849 * 119.93350 * 0.61908 * 7 6 5 9 9 N 1.39945 * 120.07335 * 179.67687 * 8 7 6 10 10 C 1.34771 * 119.99770 * 326.56275 * 9 8 7 11 11 O 1.21589 * 120.00596 * 354.70420 * 10 9 8 12 12 N 1.34777 * 119.99959 * 174.70259 * 10 9 8 13 13 C 1.46503 * 120.00220 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47107 * 270.00412 * 13 12 10 15 15 H 1.07994 * 120.00401 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99796 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00049 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99946 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47274 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47036 * 120.00031 * 18 16 14 21 21 H 1.48510 * 109.46947 * 239.99478 * 18 16 14 22 22 C 1.46501 * 120.00148 * 0.02562 * 12 10 9 23 23 C 1.53002 * 109.46887 * 270.00083 * 22 12 10 24 24 C 1.52998 * 117.49234 * 243.61787 * 23 22 12 25 25 C 1.52999 * 117.49695 * 174.99809 * 23 22 12 26 26 C 1.38096 * 119.96885 * 89.99699 * 4 3 2 27 27 H 1.08999 * 109.47313 * 59.99694 * 1 2 3 28 28 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47097 * 300.00130 * 1 2 3 30 30 H 1.00895 * 110.99932 * 123.95330 * 2 1 3 31 31 H 1.08997 * 109.47084 * 60.00514 * 3 2 1 32 32 H 1.09007 * 109.47524 * 299.99853 * 3 2 1 33 33 H 1.08006 * 119.93320 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.96981 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.03569 * 180.30146 * 7 6 5 36 36 H 0.96991 * 119.99974 * 146.56350 * 9 8 7 37 37 H 1.08998 * 109.47098 * 30.00488 * 13 12 10 38 38 H 1.08999 * 109.47105 * 150.00486 * 13 12 10 39 39 H 0.96999 * 119.99766 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47582 * 149.99580 * 22 12 10 41 41 H 1.09004 * 109.46634 * 29.99335 * 22 12 10 42 42 H 1.09000 * 115.54803 * 29.32717 * 23 22 12 43 43 H 1.09000 * 117.50235 * 359.97438 * 24 23 22 44 44 H 1.09007 * 117.49314 * 145.02215 * 24 23 22 45 45 H 1.09001 * 117.49789 * 214.97792 * 25 23 22 46 46 H 1.09003 * 117.50059 * 359.97438 * 25 23 22 47 47 H 1.07998 * 120.03288 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.1929 1.3131 1.1972 6 6 5.5750 1.2767 1.2010 7 6 6.2699 1.2517 0.0074 8 6 5.5793 1.2761 -1.1969 9 7 6.2806 1.2576 -2.4079 10 6 7.4804 1.8644 -2.5010 11 8 7.9100 2.5092 -1.5640 12 7 8.2040 1.7565 -3.6329 13 6 9.5080 2.4165 -3.7344 14 6 9.3252 3.8082 -4.2829 15 1 8.3368 4.1652 -4.5315 16 6 10.4202 4.6254 -4.4684 17 7 11.6240 4.1904 -4.1662 18 14 10.1936 6.3507 -5.1477 19 1 8.7518 6.5961 -5.4046 20 1 10.6968 7.3407 -4.1619 21 1 10.9524 6.4865 -6.4170 22 6 7.6862 0.9801 -4.7622 23 6 8.1445 -0.4740 -4.6342 24 6 9.0681 -1.0220 -5.7239 25 6 7.6086 -1.4764 -5.6583 26 6 4.1910 1.3129 -1.1972 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8305 -0.5261 0.7813 31 1 1.6460 1.8947 0.8900 32 1 1.6459 1.8949 -0.8900 33 1 3.6517 1.3274 2.1318 34 1 6.1118 1.2622 2.1381 35 1 7.3493 1.2184 0.0110 36 1 5.9031 0.8082 -3.1800 37 1 9.9648 2.4725 -2.7464 38 1 10.1535 1.8450 -4.4013 39 1 12.3942 4.7655 -4.2964 40 1 8.0636 1.3993 -5.6949 41 1 6.5968 1.0192 -4.7608 42 1 8.3006 -0.8298 -3.6157 43 1 9.3488 -0.3468 -6.5322 44 1 9.8322 -1.7386 -5.4224 45 1 7.4124 -2.4918 -5.3138 46 1 6.9291 -1.1000 -6.4231 47 1 3.6508 1.3279 -2.1323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415944279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:00 Heat of formation + Delta-G solvation = 11.908989 kcal Electronic energy + Delta-G solvation = -26276.974650 eV Core-core repulsion = 22652.864093 eV Total energy + Delta-G solvation = -3624.110556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74373 -40.03612 -38.47079 -37.07642 -36.14335 -35.60662 -34.52237 -32.29656 -30.87138 -29.46632 -27.64550 -27.49235 -25.23397 -24.48570 -23.31143 -23.17104 -22.59241 -21.81258 -20.57078 -19.26949 -18.59700 -18.24643 -17.34763 -16.93848 -16.72236 -16.37413 -16.23506 -15.95997 -15.59623 -15.49865 -15.05920 -14.82367 -14.62470 -14.52596 -14.27095 -13.78589 -13.63314 -13.39528 -13.32720 -12.97439 -12.95158 -12.67570 -12.62778 -12.59216 -12.40204 -12.30534 -12.23152 -11.97433 -11.73176 -11.35307 -11.29562 -11.01880 -10.78604 -10.63967 -9.75316 -9.58065 -9.34157 -8.93368 -8.21692 -6.36356 0.40154 0.46416 1.35451 1.38149 1.49484 1.71654 2.15414 2.38679 2.84948 2.87785 3.01912 3.08328 3.51841 3.84347 3.85926 3.98412 4.01193 4.13127 4.22480 4.32993 4.36694 4.44515 4.48493 4.58916 4.60213 4.65500 4.75652 4.76703 4.84116 4.85743 4.94126 5.05481 5.09105 5.10381 5.20672 5.26403 5.31654 5.41634 5.46570 5.56214 5.63600 5.68740 5.79867 6.02581 6.06329 6.09624 6.16823 6.47164 6.72521 7.03688 7.30557 7.62503 8.85113 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011982 B = 0.003339 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.260859 B = 8382.529517 C = 9614.311198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.701 5.701 3 C 0.106 3.894 4 C -0.065 4.065 5 C -0.131 4.131 6 C -0.103 4.103 7 C -0.148 4.148 8 C 0.156 3.844 9 N -0.676 5.676 10 C 0.695 3.305 11 O -0.619 6.619 12 N -0.607 5.607 13 C 0.282 3.718 14 C -0.541 4.541 15 H 0.051 0.949 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.268 1.268 22 C 0.142 3.858 23 C -0.188 4.188 24 C -0.185 4.185 25 C -0.143 4.143 26 C -0.131 4.131 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.347 0.653 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.417 0.583 37 H -0.003 1.003 38 H 0.027 0.973 39 H 0.267 0.733 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.063 -12.545 3.841 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.332 5.332 3 C -0.023 4.023 4 C -0.066 4.066 5 C -0.151 4.151 6 C -0.122 4.122 7 C -0.170 4.170 8 C 0.061 3.939 9 N -0.327 5.327 10 C 0.397 3.603 11 O -0.499 6.499 12 N -0.341 5.341 13 C 0.161 3.839 14 C -0.580 4.580 15 H 0.069 0.931 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.791 3.209 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.193 1.193 22 C 0.019 3.981 23 C -0.207 4.207 24 C -0.222 4.222 25 C -0.180 4.180 26 C -0.152 4.152 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.165 0.835 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.118 0.882 36 H 0.256 0.744 37 H 0.015 0.985 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.457 -12.108 3.719 24.061 hybrid contribution 0.662 1.122 0.319 1.341 sum -19.795 -10.986 4.039 22.997 Atomic orbital electron populations 1.22247 0.86510 1.02659 1.00804 1.60409 1.08674 1.13342 1.50796 1.20843 0.88781 0.90529 1.02118 1.19717 0.95871 0.98921 0.92123 1.21215 0.93465 1.01947 0.98424 1.21170 0.94959 0.98884 0.97174 1.21184 0.99952 1.03093 0.92727 1.17781 0.91437 0.99795 0.84916 1.42650 1.18759 1.57927 1.13324 1.16091 0.80989 0.79763 0.83442 1.90866 1.71987 1.47148 1.39899 1.47382 1.20707 1.52615 1.13359 1.18627 0.78693 0.91238 0.95374 1.21733 0.93314 0.99998 1.42908 0.93074 1.25822 0.94663 1.02742 0.95769 1.70059 0.99072 1.38498 1.49085 0.85388 0.78412 0.78924 0.78191 1.19273 1.20835 1.19276 1.21206 0.98747 0.88689 0.89451 1.22696 1.07518 0.94553 0.95954 1.23062 0.94514 1.03845 1.00789 1.23046 0.95848 0.98852 1.00262 1.20830 0.90575 1.04063 0.99729 0.91673 0.90507 0.95228 0.83470 0.92867 0.89969 0.83473 0.84469 0.88193 0.74384 0.98519 0.95481 0.92409 0.90148 0.88939 0.89451 0.88992 0.88860 0.87210 0.86845 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.70 127.69 1.37 1.65 16 2 N -0.70 -10.20 6.84 -541.22 -3.70 -13.91 16 3 C 0.11 1.67 5.81 85.56 0.50 2.17 16 4 C -0.07 -1.40 5.39 -19.88 -0.11 -1.51 16 5 C -0.13 -2.80 9.70 22.29 0.22 -2.58 16 6 C -0.10 -2.77 10.04 22.25 0.22 -2.55 16 7 C -0.15 -5.17 8.65 22.39 0.19 -4.98 16 8 C 0.16 5.08 6.28 38.15 0.24 5.32 16 9 N -0.68 -22.96 5.22 -317.18 -1.66 -24.61 16 10 C 0.70 31.29 8.02 179.06 1.44 32.72 16 11 O -0.62 -34.05 13.62 -4.00 -0.05 -34.10 16 12 N -0.61 -26.80 2.46 -844.19 -2.07 -28.87 16 13 C 0.28 15.57 5.16 85.63 0.44 16.02 16 14 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 15 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 16 C 0.01 0.53 5.46 84.65 0.46 0.99 16 17 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 18 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 C 0.14 4.55 5.50 86.38 0.48 5.03 16 23 C -0.19 -5.17 6.01 -10.79 -0.06 -5.24 16 24 C -0.19 -4.67 10.18 30.59 0.31 -4.36 16 25 C -0.14 -2.76 10.25 30.59 0.31 -2.45 16 26 C -0.13 -3.34 9.61 22.39 0.22 -3.12 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.03 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.35 4.54 8.81 -89.70 -0.79 3.75 16 31 H 0.05 0.71 8.08 -2.39 -0.02 0.69 16 32 H 0.08 1.29 8.08 -2.38 -0.02 1.27 16 33 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.10 4.19 6.42 -2.91 -0.02 4.17 16 36 H 0.42 11.09 6.51 -92.72 -0.60 10.48 16 37 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 38 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.08 2.70 7.80 -2.39 -0.02 2.68 16 41 H 0.09 2.34 6.29 -2.39 -0.02 2.33 16 42 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.09 2.42 8.03 -2.39 -0.02 2.40 16 44 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -76.11 391.24 0.86 -75.25 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -0.42 Total: 29.38 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.46 Total: 5.61 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -7.15 Total: -123.84 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.05 Total: -34.10 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -76.11 0.86 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415944279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.159 kcal (2) G-P(sol) polarization free energy of solvation -76.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds