Wall clock time and date at job start Tue Mar 31 2020 11:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34770 * 119.99991 * 2 1 4 4 O 1.21593 * 120.00173 * 179.97438 * 3 2 1 5 5 N 1.34777 * 120.00410 * 359.97438 * 3 2 1 6 6 C 1.46492 * 120.00419 * 184.98252 * 5 3 2 7 7 H 1.09004 * 109.47284 * 326.17438 * 6 5 3 8 8 C 1.53006 * 109.47154 * 206.17642 * 6 5 3 9 9 C 1.50701 * 109.47134 * 65.34475 * 8 6 5 10 10 H 1.07999 * 119.99886 * 355.24866 * 9 8 6 11 11 C 1.37877 * 119.99772 * 175.25021 * 9 8 6 12 12 N 1.31506 * 120.00137 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99799 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46990 * 59.99991 * 13 11 9 15 15 H 1.48495 * 109.46860 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47029 * 300.00272 * 13 11 9 17 17 C 1.50699 * 109.47461 * 86.17579 * 6 5 3 18 18 C 1.38230 * 119.99660 * 39.72617 * 17 6 5 19 19 C 1.38241 * 119.99864 * 179.81598 * 18 17 6 20 20 C 1.38230 * 119.99852 * 0.39519 * 19 18 17 21 21 C 1.38232 * 120.00245 * 359.85669 * 20 19 18 22 22 C 1.38235 * 119.99917 * 359.95853 * 21 20 19 23 23 C 1.46497 * 119.99743 * 179.97438 * 2 1 3 24 24 C 1.53786 * 113.61596 * 39.14323 * 23 2 1 25 25 C 1.53956 * 87.02055 * 220.04359 * 24 23 2 26 26 N 1.46900 * 113.66276 * 139.93294 * 25 24 23 27 27 C 1.53781 * 113.61705 * 301.53542 * 23 2 1 28 28 H 1.09000 * 109.46619 * 90.00620 * 1 2 3 29 29 H 1.09000 * 109.47484 * 209.99923 * 1 2 3 30 30 H 1.08995 * 109.47460 * 330.00480 * 1 2 3 31 31 H 0.97007 * 119.99429 * 4.98589 * 5 3 2 32 32 H 1.08998 * 109.47112 * 185.34157 * 8 6 5 33 33 H 1.08996 * 109.46957 * 305.34050 * 8 6 5 34 34 H 0.97007 * 120.00140 * 180.02562 * 12 11 9 35 35 H 1.08005 * 120.00516 * 359.97438 * 18 17 6 36 36 H 1.08004 * 119.99787 * 180.23485 * 19 18 17 37 37 H 1.08004 * 119.99748 * 179.83900 * 20 19 18 38 38 H 1.07996 * 120.00340 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.00422 * 179.97438 * 22 21 20 40 40 H 1.09007 * 112.84753 * 170.33611 * 23 2 1 41 41 H 1.08999 * 113.61223 * 334.56641 * 24 23 2 42 42 H 1.09000 * 113.61377 * 105.46629 * 24 23 2 43 43 H 1.08997 * 113.61287 * 270.80354 * 25 24 23 44 44 H 1.00893 * 111.00288 * 82.44593 * 26 25 24 45 45 H 1.00901 * 110.99344 * 206.39562 * 26 25 24 46 46 H 1.09007 * 113.61480 * 254.52787 * 27 23 2 47 47 H 1.08991 * 113.61618 * 25.35030 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3548 1.1672 0.0005 5 7 1.4651 2.3344 -0.0005 6 6 2.1934 3.6006 -0.1107 7 1 3.1549 3.5120 0.3952 8 6 1.3756 4.7178 0.5406 9 6 1.2616 4.4594 2.0209 10 1 1.6593 3.5480 2.4421 11 6 0.6495 5.3866 2.8374 12 7 0.1656 6.4966 2.3244 13 14 0.5076 5.0660 4.6722 14 1 1.8652 4.9156 5.2549 15 1 -0.1858 6.2072 5.3219 16 1 -0.2689 3.8205 4.8984 17 6 2.4190 3.9256 -1.5648 18 6 1.4220 3.6808 -2.4904 19 6 1.6275 3.9824 -3.8238 20 6 2.8331 4.5211 -4.2327 21 6 3.8321 4.7610 -3.3079 22 6 3.6252 4.4630 -1.9740 23 6 2.1975 -1.2687 0.0006 24 6 1.5590 -2.3491 -0.8884 25 6 1.9074 -3.3557 0.2231 26 7 0.8572 -4.3541 0.4647 27 6 1.8673 -2.1702 1.2019 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 0.4977 2.3360 0.0721 32 1 1.8714 5.6744 0.3759 33 1 0.3796 4.7439 0.0985 34 1 -0.2648 7.1491 2.8990 35 1 0.4814 3.2564 -2.1716 36 1 0.8471 3.7947 -4.5464 37 1 2.9946 4.7543 -5.2748 38 1 4.7741 5.1815 -3.6274 39 1 4.4057 4.6500 -1.2514 40 1 3.2667 -1.1403 -0.1681 41 1 0.4874 -2.2155 -1.0365 42 1 2.0977 -2.5223 -1.8201 43 1 2.8969 -3.7998 0.1156 44 1 0.9199 -5.1124 -0.1978 45 1 0.8963 -4.6978 1.4125 46 1 2.6544 -2.1993 1.9554 47 1 0.8807 -1.9867 1.6273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417913325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:16 Heat of formation + Delta-G solvation = 19.444031 kcal Electronic energy + Delta-G solvation = -26987.235188 eV Core-core repulsion = 23363.451375 eV Total energy + Delta-G solvation = -3623.783813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30771 -39.11664 -38.13823 -35.16841 -34.56459 -32.70592 -31.80569 -30.60578 -30.30409 -28.67540 -26.85043 -25.79490 -25.00597 -23.28639 -22.23400 -21.89916 -20.28542 -19.61402 -18.95897 -17.82400 -16.70582 -16.47972 -16.10585 -15.90141 -15.63744 -15.08094 -14.94582 -14.62651 -14.52585 -14.21222 -13.48362 -13.24949 -13.20096 -12.95265 -12.69802 -12.54213 -12.33495 -12.10095 -12.07340 -11.93627 -11.67345 -11.45206 -11.07739 -10.92735 -10.83571 -10.68590 -10.60402 -10.52511 -10.37015 -9.74280 -9.57004 -9.26655 -9.02536 -8.55008 -8.47800 -8.42531 -8.16917 -8.09538 -6.05782 -4.08714 1.82584 1.84897 3.04458 3.30622 3.35556 3.38909 3.68208 4.20977 4.33156 4.40443 4.42604 4.47097 4.62346 4.83780 4.85917 5.24404 5.30190 5.30842 5.31760 5.41120 5.44161 5.55400 5.61504 5.64298 5.70947 5.81771 5.87532 5.94869 5.95816 5.99598 6.14450 6.25222 6.40713 6.46884 6.64289 6.76316 6.89026 6.90051 6.91199 7.02509 7.12724 7.16986 7.35808 7.45385 7.55404 7.71959 7.91484 8.30182 8.50773 8.97298 9.13999 9.55995 11.04791 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008221 B = 0.004941 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.246069 B = 5665.263376 C = 8366.264766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.624 5.624 3 C 0.706 3.294 4 O -0.598 6.598 5 N -0.716 5.716 6 C 0.199 3.801 7 H 0.088 0.912 8 C 0.024 3.976 9 C -0.518 4.518 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.071 4.071 18 C -0.106 4.106 19 C -0.126 4.126 20 C -0.136 4.136 21 C -0.123 4.123 22 C -0.108 4.108 23 C 0.146 3.854 24 C -0.138 4.138 25 C 0.059 3.941 26 N -0.838 5.838 27 C -0.148 4.148 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.396 0.604 32 H 0.038 0.962 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.339 0.661 45 H 0.341 0.659 46 H 0.069 0.931 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 -15.692 -8.923 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.360 5.360 3 C 0.408 3.592 4 O -0.477 6.477 5 N -0.369 5.369 6 C 0.094 3.906 7 H 0.106 0.894 8 C -0.013 4.013 9 C -0.557 4.557 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.072 4.072 18 C -0.125 4.125 19 C -0.144 4.144 20 C -0.154 4.154 21 C -0.141 4.141 22 C -0.127 4.127 23 C 0.040 3.960 24 C -0.177 4.177 25 C -0.053 4.053 26 N -0.367 5.367 27 C -0.187 4.187 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.232 0.768 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.151 0.849 45 H 0.154 0.846 46 H 0.088 0.912 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.985 -14.873 -9.032 17.429 hybrid contribution 0.071 -0.755 1.260 1.470 sum 1.056 -15.628 -7.772 17.486 Atomic orbital electron populations 1.21674 0.80231 1.03201 1.01409 1.46882 1.05927 1.04478 1.78755 1.15954 0.85357 0.80485 0.77427 1.90849 1.11752 1.86293 1.58785 1.45281 1.10190 1.04235 1.77233 1.20143 0.97756 0.83381 0.89320 0.89377 1.19387 0.94635 0.92127 0.95138 1.21107 1.37703 1.04707 0.92140 0.92431 1.24977 0.95492 0.95033 0.98594 1.69947 1.38727 1.08923 1.35581 0.86663 0.78313 0.77588 0.85469 1.20233 1.21332 1.20325 1.20625 0.93337 0.96293 0.96965 1.20884 0.98791 1.00039 0.92745 1.21031 0.97224 1.00242 0.95885 1.20979 0.94207 1.01270 0.98949 1.21035 0.98879 1.00794 0.93426 1.21029 0.96927 0.98998 0.95721 1.22130 0.97715 0.80683 0.95451 1.23539 1.02412 0.94653 0.97124 1.22633 0.93000 0.91513 0.98111 1.58816 1.50496 1.18919 1.08502 1.23571 1.03003 0.94681 0.97421 0.93011 0.90824 0.90974 0.76802 0.94381 0.96183 0.92855 0.86726 0.86836 0.86916 0.86657 0.86163 0.86418 0.88705 0.91428 0.91968 0.84867 0.84575 0.91245 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 8.84 59.85 0.53 1.45 16 2 N -0.62 -9.25 3.08 -178.73 -0.55 -9.80 16 3 C 0.71 13.42 8.25 -86.92 -0.72 12.70 16 4 O -0.60 -13.41 15.43 5.28 0.08 -13.33 16 5 N -0.72 -13.51 3.89 -59.81 -0.23 -13.74 16 6 C 0.20 4.19 2.17 -69.08 -0.15 4.04 16 7 H 0.09 2.05 7.34 -51.93 -0.38 1.67 16 8 C 0.02 0.60 4.50 -27.88 -0.13 0.47 16 9 C -0.52 -13.92 8.84 -34.44 -0.30 -14.23 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 13 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.07 -1.35 4.93 -104.63 -0.52 -1.87 16 18 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 19 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 20 C -0.14 -1.98 10.05 -39.59 -0.40 -2.38 16 21 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 22 C -0.11 -1.94 9.67 -39.58 -0.38 -2.32 16 23 C 0.15 1.89 4.21 -67.12 -0.28 1.60 16 24 C -0.14 -1.42 7.35 -25.82 -0.19 -1.61 16 25 C 0.06 0.54 4.96 -66.80 -0.33 0.20 16 26 N -0.84 -6.44 9.58 -3.90 -0.04 -6.48 16 27 C -0.15 -1.62 7.40 -25.92 -0.19 -1.81 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.76 6.33 -51.93 -0.33 0.43 16 30 H 0.07 0.89 6.30 -51.93 -0.33 0.56 16 31 H 0.40 6.88 6.31 -40.82 -0.26 6.62 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.11 1.85 7.71 -52.48 -0.40 1.45 16 36 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.12 2.08 8.04 -52.49 -0.42 1.66 16 40 H 0.12 1.73 7.21 -51.93 -0.37 1.36 16 41 H 0.09 0.99 6.81 -51.93 -0.35 0.64 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.34 2.09 9.08 -39.30 -0.36 1.73 16 45 H 0.34 2.26 9.07 -39.29 -0.36 1.90 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 1.06 6.82 -51.93 -0.35 0.71 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -32.07 382.26 -10.85 -42.91 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -7.26 Total: 12.44 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -4.32 Total: -8.98 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.08 Total: -55.09 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.07 -10.85 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417913325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.357 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds