Wall clock time and date at job start Tue Mar 31 2020 11:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34770 * 119.99991 * 2 1 4 4 O 1.21593 * 120.00173 * 179.97438 * 3 2 1 5 5 N 1.34777 * 120.00410 * 359.97438 * 3 2 1 6 6 C 1.46492 * 120.00419 * 184.98252 * 5 3 2 7 7 H 1.09004 * 109.47284 * 326.17438 * 6 5 3 8 8 C 1.53006 * 109.47154 * 206.17642 * 6 5 3 9 9 C 1.50701 * 109.47134 * 65.34475 * 8 6 5 10 10 H 1.07999 * 119.99886 * 355.24866 * 9 8 6 11 11 C 1.37877 * 119.99772 * 175.25021 * 9 8 6 12 12 N 1.31506 * 120.00137 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99799 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46990 * 59.99991 * 13 11 9 15 15 H 1.48495 * 109.46860 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47029 * 300.00272 * 13 11 9 17 17 C 1.50699 * 109.47461 * 86.17579 * 6 5 3 18 18 C 1.38230 * 119.99660 * 39.72617 * 17 6 5 19 19 C 1.38241 * 119.99864 * 179.81598 * 18 17 6 20 20 C 1.38230 * 119.99852 * 0.39519 * 19 18 17 21 21 C 1.38232 * 120.00245 * 359.85669 * 20 19 18 22 22 C 1.38235 * 119.99917 * 359.95853 * 21 20 19 23 23 C 1.46497 * 119.99743 * 179.97438 * 2 1 3 24 24 C 1.53786 * 113.61596 * 39.14323 * 23 2 1 25 25 C 1.53956 * 87.02055 * 220.04359 * 24 23 2 26 26 N 1.46900 * 113.66276 * 139.93294 * 25 24 23 27 27 C 1.53781 * 113.61705 * 301.53542 * 23 2 1 28 28 H 1.09000 * 109.46619 * 90.00620 * 1 2 3 29 29 H 1.09000 * 109.47484 * 209.99923 * 1 2 3 30 30 H 1.08995 * 109.47460 * 330.00480 * 1 2 3 31 31 H 0.97007 * 119.99429 * 4.98589 * 5 3 2 32 32 H 1.08998 * 109.47112 * 185.34157 * 8 6 5 33 33 H 1.08996 * 109.46957 * 305.34050 * 8 6 5 34 34 H 0.97007 * 120.00140 * 180.02562 * 12 11 9 35 35 H 1.08005 * 120.00516 * 359.97438 * 18 17 6 36 36 H 1.08004 * 119.99787 * 180.23485 * 19 18 17 37 37 H 1.08004 * 119.99748 * 179.83900 * 20 19 18 38 38 H 1.07996 * 120.00340 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.00422 * 179.97438 * 22 21 20 40 40 H 1.09007 * 112.84753 * 170.33611 * 23 2 1 41 41 H 1.08999 * 113.61223 * 334.56641 * 24 23 2 42 42 H 1.09000 * 113.61377 * 105.46629 * 24 23 2 43 43 H 1.08997 * 113.61287 * 270.80354 * 25 24 23 44 44 H 1.00893 * 111.00288 * 82.44593 * 26 25 24 45 45 H 1.00901 * 110.99344 * 206.39562 * 26 25 24 46 46 H 1.09007 * 113.61480 * 254.52787 * 27 23 2 47 47 H 1.08991 * 113.61618 * 25.35030 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3548 1.1672 0.0005 5 7 1.4651 2.3344 -0.0005 6 6 2.1934 3.6006 -0.1107 7 1 3.1549 3.5120 0.3952 8 6 1.3756 4.7178 0.5406 9 6 1.2616 4.4594 2.0209 10 1 1.6593 3.5480 2.4421 11 6 0.6495 5.3866 2.8374 12 7 0.1656 6.4966 2.3244 13 14 0.5076 5.0660 4.6722 14 1 1.8652 4.9156 5.2549 15 1 -0.1858 6.2072 5.3219 16 1 -0.2689 3.8205 4.8984 17 6 2.4190 3.9256 -1.5648 18 6 1.4220 3.6808 -2.4904 19 6 1.6275 3.9824 -3.8238 20 6 2.8331 4.5211 -4.2327 21 6 3.8321 4.7610 -3.3079 22 6 3.6252 4.4630 -1.9740 23 6 2.1975 -1.2687 0.0006 24 6 1.5590 -2.3491 -0.8884 25 6 1.9074 -3.3557 0.2231 26 7 0.8572 -4.3541 0.4647 27 6 1.8673 -2.1702 1.2019 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 0.4977 2.3360 0.0721 32 1 1.8714 5.6744 0.3759 33 1 0.3796 4.7439 0.0985 34 1 -0.2648 7.1491 2.8990 35 1 0.4814 3.2564 -2.1716 36 1 0.8471 3.7947 -4.5464 37 1 2.9946 4.7543 -5.2748 38 1 4.7741 5.1815 -3.6274 39 1 4.4057 4.6500 -1.2514 40 1 3.2667 -1.1403 -0.1681 41 1 0.4874 -2.2155 -1.0365 42 1 2.0977 -2.5223 -1.8201 43 1 2.8969 -3.7998 0.1156 44 1 0.9199 -5.1124 -0.1978 45 1 0.8963 -4.6978 1.4125 46 1 2.6544 -2.1993 1.9554 47 1 0.8807 -1.9867 1.6273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417913325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:15 Heat of formation + Delta-G solvation = -0.874479 kcal Electronic energy + Delta-G solvation = -26988.116264 eV Core-core repulsion = 23363.451375 eV Total energy + Delta-G solvation = -3624.664889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59293 -40.33310 -39.36022 -36.78054 -35.81042 -34.68630 -32.82919 -31.82938 -31.55735 -30.48105 -27.92796 -26.77948 -26.66131 -24.46480 -23.77751 -23.30524 -21.63275 -20.97325 -19.99185 -19.17724 -18.53078 -17.80778 -17.51677 -16.86486 -16.66253 -16.47460 -16.19889 -16.15426 -15.83633 -15.42562 -14.91519 -14.57017 -14.42003 -14.23982 -14.18043 -13.94228 -13.65942 -13.47511 -13.36599 -13.20865 -12.89013 -12.79710 -12.64568 -12.48659 -12.40295 -12.14120 -11.86256 -11.81246 -11.58833 -11.38620 -11.33813 -11.14992 -10.58482 -10.06804 -9.74775 -9.64525 -9.53124 -9.37712 -8.20079 -6.30024 0.52219 0.57100 1.38622 1.40699 1.48709 1.75665 2.20632 2.39680 2.92618 3.09832 3.18701 3.55453 3.65141 3.71154 3.91407 4.01243 4.04071 4.04824 4.21857 4.25791 4.32966 4.43615 4.56166 4.63968 4.66525 4.76644 4.77237 4.80284 4.83674 4.90860 5.01197 5.06722 5.13705 5.20895 5.26774 5.30806 5.43195 5.61772 5.62917 5.64078 5.65563 5.78106 5.93714 6.08513 6.17268 6.21945 6.29394 6.63253 6.81944 7.07192 7.38569 7.65781 8.90482 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008221 B = 0.004941 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.246069 B = 5665.263376 C = 8366.264766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.617 5.617 3 C 0.700 3.300 4 O -0.640 6.640 5 N -0.712 5.712 6 C 0.216 3.784 7 H 0.054 0.946 8 C 0.040 3.960 9 C -0.529 4.529 10 H 0.050 0.950 11 C 0.013 3.987 12 N -0.925 5.925 13 Si 0.955 3.045 14 H -0.277 1.277 15 H -0.281 1.281 16 H -0.266 1.266 17 C -0.098 4.098 18 C -0.119 4.119 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.124 4.124 22 C -0.134 4.134 23 C 0.128 3.872 24 C -0.126 4.126 25 C 0.075 3.925 26 N -0.840 5.840 27 C -0.143 4.143 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.403 0.597 32 H 0.007 0.993 33 H 0.010 0.990 34 H 0.264 0.736 35 H 0.119 0.881 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.351 0.649 45 H 0.349 0.651 46 H 0.064 0.936 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -17.468 -10.235 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.352 5.352 3 C 0.402 3.598 4 O -0.522 6.522 5 N -0.366 5.366 6 C 0.110 3.890 7 H 0.072 0.928 8 C 0.002 3.998 9 C -0.567 4.567 10 H 0.068 0.932 11 C -0.186 4.186 12 N -0.565 5.565 13 Si 0.780 3.220 14 H -0.203 1.203 15 H -0.206 1.206 16 H -0.191 1.191 17 C -0.099 4.099 18 C -0.137 4.137 19 C -0.142 4.142 20 C -0.147 4.147 21 C -0.141 4.141 22 C -0.153 4.153 23 C 0.023 3.977 24 C -0.165 4.165 25 C -0.037 4.037 26 N -0.371 5.371 27 C -0.182 4.182 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.240 0.760 32 H 0.025 0.975 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.165 0.835 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.164 0.836 45 H 0.163 0.837 46 H 0.082 0.918 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.171 -16.703 -10.346 19.649 hybrid contribution 0.437 -0.213 1.604 1.676 sum 0.266 -16.916 -8.742 19.043 Atomic orbital electron populations 1.21867 0.78133 1.03834 1.02856 1.46959 1.07215 1.03657 1.77396 1.16132 0.84971 0.81365 0.77361 1.90809 1.13693 1.87006 1.60720 1.45076 1.10312 1.03752 1.77444 1.19592 0.95441 0.83238 0.90716 0.92773 1.19120 0.94158 0.92075 0.94433 1.21342 1.37440 1.04451 0.93502 0.93208 1.25751 0.95094 0.94746 1.03018 1.70057 1.39479 1.09747 1.37199 0.85658 0.78259 0.77965 0.80082 1.20273 1.20611 1.19131 1.20491 0.94939 0.98620 0.95898 1.21035 0.98481 1.00526 0.93684 1.21436 0.98424 0.98975 0.95328 1.21465 0.93264 0.99357 1.00605 1.21378 1.00507 0.99990 0.92262 1.21175 0.96652 1.00218 0.97268 1.22346 0.96747 0.80462 0.98156 1.23460 1.02345 0.93361 0.97293 1.22454 0.93881 0.91228 0.96154 1.58750 1.49680 1.19261 1.09452 1.23519 1.02682 0.95111 0.96922 0.91110 0.88784 0.91708 0.75996 0.97462 0.97145 0.92675 0.86298 0.83523 0.83039 0.83867 0.87139 0.88834 0.88252 0.90873 0.91047 0.83572 0.83664 0.91764 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.69 8.84 127.77 1.13 2.82 16 2 N -0.62 -18.34 3.08 -837.64 -2.58 -20.93 16 3 C 0.70 27.67 8.25 179.06 1.48 29.14 16 4 O -0.64 -30.36 15.43 -4.01 -0.06 -30.42 16 5 N -0.71 -28.10 3.89 -461.41 -1.80 -29.89 16 6 C 0.22 9.70 2.17 44.25 0.10 9.79 16 7 H 0.05 2.76 7.34 -2.38 -0.02 2.74 16 8 C 0.04 2.05 4.50 29.85 0.13 2.18 16 9 C -0.53 -29.53 8.84 25.60 0.23 -29.31 16 10 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 11 C 0.01 0.71 5.46 84.66 0.46 1.17 16 12 N -0.92 -54.63 13.29 21.45 0.28 -54.35 16 13 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 17 C -0.10 -3.91 4.93 -19.87 -0.10 -4.01 16 18 C -0.12 -4.09 9.33 22.27 0.21 -3.88 16 19 C -0.12 -3.47 10.05 22.27 0.22 -3.24 16 20 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 21 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 22 C -0.13 -5.01 9.67 22.27 0.22 -4.80 16 23 C 0.13 3.28 4.21 45.52 0.19 3.47 16 24 C -0.13 -2.35 7.35 31.18 0.23 -2.12 16 25 C 0.08 1.20 4.96 45.50 0.23 1.42 16 26 N -0.84 -10.62 9.58 -166.24 -1.59 -12.22 16 27 C -0.14 -3.00 7.40 31.12 0.23 -2.77 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.74 6.33 -2.39 -0.02 1.72 16 30 H 0.06 1.56 6.30 -2.39 -0.02 1.54 16 31 H 0.40 14.47 6.31 -92.70 -0.59 13.89 16 32 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 34 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 35 H 0.12 3.84 7.71 -2.91 -0.02 3.82 16 36 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 38 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 39 H 0.11 4.15 8.04 -2.91 -0.02 4.13 16 40 H 0.09 2.87 7.21 -2.38 -0.02 2.85 16 41 H 0.10 1.80 6.81 -2.39 -0.02 1.79 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.35 3.29 9.08 -89.70 -0.81 2.47 16 45 H 0.35 3.70 9.07 -89.69 -0.81 2.89 16 46 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 47 H 0.09 1.96 6.82 -2.39 -0.02 1.95 16 Total: -1.00 -72.13 382.26 0.46 -71.67 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -1.21 Total: 36.64 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 5.40 Total: -6.72 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -5.69 Total: -117.38 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.06 Total: -30.42 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -72.13 0.46 -71.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417913325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.798 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds