Wall clock time and date at job start Tue Mar 31 2020 11:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46899 * 111.00025 * 2 1 4 4 H 1.09001 * 110.78329 * 328.24617 * 3 2 1 5 5 C 1.55164 * 110.72257 * 205.00077 * 3 2 1 6 6 C 1.54912 * 101.61742 * 206.15435 * 5 3 2 7 7 N 1.47433 * 104.83092 * 36.99356 * 6 5 3 8 8 C 1.34776 * 125.64979 * 155.91016 * 7 6 5 9 9 O 1.21581 * 120.00307 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99533 * 359.96924 * 8 7 6 11 11 C 1.46502 * 119.99339 * 175.09136 * 10 8 7 12 12 H 1.08990 * 109.47605 * 326.58636 * 11 10 8 13 13 C 1.53002 * 109.47118 * 86.58689 * 11 10 8 14 14 C 1.50698 * 109.47074 * 185.71324 * 13 11 10 15 15 H 1.08000 * 120.00209 * 355.55728 * 14 13 11 16 16 C 1.37875 * 119.99825 * 175.55349 * 14 13 11 17 17 N 1.31516 * 119.99937 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00222 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47218 * 89.99863 * 18 16 14 20 20 H 1.48498 * 109.47260 * 210.00293 * 18 16 14 21 21 H 1.48508 * 109.46687 * 330.00111 * 18 16 14 22 22 C 1.50708 * 109.46668 * 206.58342 * 11 10 8 23 23 C 1.38235 * 120.00131 * 319.72632 * 22 11 10 24 24 C 1.38230 * 119.99937 * 179.78594 * 23 22 11 25 25 C 1.38242 * 119.99717 * 0.44824 * 24 23 22 26 26 C 1.38231 * 120.00154 * 359.80477 * 25 24 23 27 27 C 1.38230 * 119.99463 * 140.00503 * 22 11 10 28 28 C 1.47020 * 108.70214 * 335.86723 * 7 6 5 29 29 H 1.09003 * 109.47424 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47151 * 299.99554 * 1 2 3 31 31 H 1.08996 * 109.47612 * 59.99869 * 1 2 3 32 32 H 1.00900 * 110.99936 * 236.05176 * 2 1 3 33 33 H 1.08995 * 110.99756 * 88.06285 * 5 3 2 34 34 H 1.08994 * 111.00418 * 324.25007 * 5 3 2 35 35 H 1.08997 * 110.36953 * 155.82641 * 6 5 3 36 36 H 1.08998 * 110.36703 * 278.04327 * 6 5 3 37 37 H 0.96995 * 120.00480 * 355.09211 * 10 8 7 38 38 H 1.09001 * 109.47051 * 305.71991 * 13 11 10 39 39 H 1.09005 * 109.47248 * 65.71296 * 13 11 10 40 40 H 0.97012 * 119.99713 * 179.97438 * 17 16 14 41 41 H 1.07994 * 119.99860 * 0.02562 * 23 22 11 42 42 H 1.07996 * 120.00526 * 180.27502 * 24 23 22 43 43 H 1.07997 * 119.99999 * 179.83393 * 25 24 23 44 44 H 1.08000 * 120.00144 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.00616 * 359.97438 * 27 22 11 46 46 H 1.09001 * 109.88008 * 120.47800 * 28 7 6 47 47 H 1.09002 * 109.88263 * 241.48933 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3250 2.0430 -0.5363 5 6 3.4200 1.4126 -0.6133 6 6 4.0191 2.6654 0.0732 7 7 3.4787 2.6389 1.4447 8 6 4.0394 3.2245 2.5213 9 8 3.5030 3.1376 3.6090 10 7 5.1948 3.9063 2.3923 11 6 5.7484 4.6327 3.5378 12 1 4.9344 5.0189 4.1510 13 6 6.6114 3.6854 4.3737 14 6 7.0662 4.3921 5.6246 15 1 6.8299 5.4357 5.7715 16 6 7.7838 3.7064 6.5816 17 7 8.0718 2.4358 6.4025 18 14 8.3469 4.5822 8.1325 19 1 7.3026 4.4540 9.1803 20 1 9.6107 3.9700 8.6156 21 1 8.5752 6.0190 7.8344 22 6 6.5935 5.7790 3.0448 23 6 7.4174 5.6086 1.9480 24 6 8.1892 6.6613 1.4931 25 6 8.1442 7.8818 2.1409 26 6 7.3243 8.0506 3.2409 27 6 6.5491 6.9991 3.6931 28 6 2.2264 1.8687 1.4431 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8305 -0.5260 -0.7814 33 1 3.3761 1.5430 -1.6946 34 1 3.9837 0.5170 -0.3525 35 1 5.1071 2.6034 0.0930 36 1 3.7008 3.5703 -0.4443 37 1 5.6598 3.9161 1.5411 38 1 6.0274 2.8059 4.6450 39 1 7.4814 3.3786 3.7930 40 1 8.5771 1.9534 7.0757 41 1 7.4551 4.6542 1.4441 42 1 8.8296 6.5296 0.6335 43 1 8.7492 8.7035 1.7872 44 1 7.2894 9.0039 3.7472 45 1 5.9086 7.1310 4.5525 46 1 2.3139 1.0175 2.1183 47 1 1.3990 2.5059 1.7554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417925430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:07 Heat of formation + Delta-G solvation = 4.841930 kcal Electronic energy + Delta-G solvation = -26689.896047 eV Core-core repulsion = 23065.479040 eV Total energy + Delta-G solvation = -3624.417007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.11957 -38.97988 -37.81889 -35.17605 -34.82801 -32.73798 -31.30910 -30.50583 -30.23340 -28.70931 -28.23314 -25.52460 -24.48366 -22.94666 -22.32270 -21.99230 -21.02333 -20.01001 -19.28450 -18.17213 -16.79163 -16.63053 -16.01606 -15.44143 -15.34382 -14.81879 -14.80000 -14.46591 -14.41416 -14.24228 -13.86172 -13.46004 -13.17505 -12.93955 -12.82480 -12.67460 -12.49728 -12.40494 -12.13066 -12.05905 -11.61395 -11.45768 -11.41041 -11.07322 -11.01394 -10.80850 -10.67525 -10.60647 -10.02154 -9.81466 -9.67692 -9.06959 -8.81899 -8.59456 -8.45557 -8.32696 -8.24938 -7.93329 -5.92335 -3.93602 1.83326 1.86597 2.89584 3.38262 3.43879 3.46686 3.69630 3.92098 4.17684 4.26679 4.36295 4.50889 4.60811 4.85710 5.05980 5.09909 5.13835 5.27857 5.28921 5.29880 5.38724 5.42755 5.45249 5.53181 5.54628 5.63267 5.75963 5.84219 5.92996 5.96489 6.01128 6.20455 6.38602 6.43831 6.54856 6.70132 6.80962 6.86499 6.91575 6.97509 7.01676 7.20823 7.33246 7.45698 7.74718 7.84777 8.07337 8.41702 8.44599 9.07369 9.14397 9.68927 11.19389 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.003683 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.265394 B = 7599.827286 C = 9223.682913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.684 5.684 3 C 0.073 3.927 4 H 0.063 0.937 5 C -0.135 4.135 6 C 0.104 3.896 7 N -0.641 5.641 8 C 0.722 3.278 9 O -0.577 6.577 10 N -0.735 5.735 11 C 0.198 3.802 12 H 0.087 0.913 13 C 0.025 3.975 14 C -0.511 4.511 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.273 1.273 22 C -0.047 4.047 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.135 4.135 26 C -0.121 4.121 27 C -0.099 4.099 28 C 0.138 3.862 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.022 0.978 32 H 0.345 0.655 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.386 0.614 38 H 0.033 0.967 39 H 0.014 0.986 40 H 0.259 0.741 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.078 0.922 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.887 1.884 -19.217 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.315 5.315 3 C -0.038 4.038 4 H 0.080 0.920 5 C -0.173 4.173 6 C -0.021 4.021 7 N -0.382 5.382 8 C 0.424 3.576 9 O -0.453 6.453 10 N -0.390 5.390 11 C 0.095 3.905 12 H 0.105 0.895 13 C -0.013 4.013 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.048 4.048 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.154 4.154 26 C -0.139 4.139 27 C -0.117 4.117 28 C 0.013 3.987 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.164 0.836 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.220 0.780 38 H 0.051 0.949 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.140 0.860 46 H 0.096 0.904 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.129 1.662 -17.533 19.837 hybrid contribution 0.578 0.581 -0.414 0.918 sum -8.551 2.243 -17.947 20.006 Atomic orbital electron populations 1.22274 0.87380 1.02073 1.00597 1.60264 1.08069 1.13063 1.50097 1.22597 0.95495 0.89811 0.95857 0.91958 1.22981 0.95527 0.99147 0.99694 1.22146 0.99075 0.97672 0.83166 1.47491 1.26048 1.57596 1.07061 1.15393 0.80924 0.78617 0.82706 1.90954 1.64786 1.65228 1.24375 1.45439 1.23565 1.54859 1.15126 1.20200 0.95442 0.89995 0.84884 0.89471 1.19437 0.93818 0.94422 0.93670 1.21086 1.34188 0.96748 1.03008 0.92336 1.24954 0.96217 0.94779 0.98224 1.69979 1.39851 1.08480 1.34974 0.86626 0.78074 0.79820 0.83714 1.20655 1.21349 1.19834 1.19979 0.96476 0.94277 0.94044 1.20810 0.97205 0.98292 0.97405 1.20968 0.99480 0.93455 1.00101 1.20972 0.99992 0.97366 0.97036 1.21043 0.97205 0.98704 0.96930 1.20993 0.99497 0.92184 0.99046 1.21664 0.85453 0.95374 0.96181 0.91246 0.91361 0.95952 0.83613 0.90051 0.89395 0.90793 0.91680 0.77983 0.94862 0.96778 0.93107 0.86886 0.86756 0.86895 0.86616 0.85978 0.90376 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.57 60.06 0.63 0.82 16 2 N -0.68 -5.85 6.68 -112.03 -0.75 -6.60 16 3 C 0.07 0.67 3.28 -65.85 -0.22 0.45 16 4 H 0.06 0.52 7.83 -51.93 -0.41 0.11 16 5 C -0.14 -1.08 6.46 -24.58 -0.16 -1.24 16 6 C 0.10 1.06 6.62 -2.52 -0.02 1.05 16 7 N -0.64 -9.61 3.33 -176.20 -0.59 -10.19 16 8 C 0.72 14.25 8.46 -86.92 -0.74 13.51 16 9 O -0.58 -14.18 16.36 5.29 0.09 -14.09 16 10 N -0.74 -13.56 4.97 -59.81 -0.30 -13.86 16 11 C 0.20 4.27 2.19 -69.08 -0.15 4.12 16 12 H 0.09 2.05 7.46 -51.93 -0.39 1.66 16 13 C 0.02 0.65 4.73 -27.88 -0.13 0.52 16 14 C -0.51 -14.60 8.64 -34.44 -0.30 -14.89 16 15 H 0.06 1.60 6.44 -52.49 -0.34 1.26 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 18 Si 0.89 22.31 29.54 -169.99 -5.02 17.28 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.05 -0.89 4.49 -104.62 -0.47 -1.36 16 23 C -0.12 -1.98 9.06 -39.59 -0.36 -2.33 16 24 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 25 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 26 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 27 C -0.10 -1.79 8.63 -39.58 -0.34 -2.13 16 28 C 0.14 1.85 6.63 -3.04 -0.02 1.83 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.02 0.14 8.08 -51.93 -0.42 -0.28 16 32 H 0.35 2.31 8.51 -39.29 -0.33 1.97 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.72 7.23 -51.93 -0.38 0.35 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.39 5.87 5.34 -40.82 -0.22 5.65 16 38 H 0.03 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.01 0.39 8.13 -51.93 -0.42 -0.03 16 40 H 0.26 7.59 8.31 -40.81 -0.34 7.25 16 41 H 0.11 1.70 6.91 -52.49 -0.36 1.34 16 42 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 45 H 0.12 2.19 7.83 -52.49 -0.41 1.78 16 46 H 0.08 1.22 8.03 -51.93 -0.42 0.81 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -35.49 382.09 -11.08 -46.57 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.45 Total: 6.84 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -3.55 Total: -4.83 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.89 Total: -57.53 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.09 Total: -14.09 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.49 -11.08 -46.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417925430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.414 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds