Wall clock time and date at job start Tue Mar 31 2020 11:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46899 * 111.00025 * 2 1 4 4 H 1.09001 * 110.78329 * 328.24617 * 3 2 1 5 5 C 1.55164 * 110.72257 * 205.00077 * 3 2 1 6 6 C 1.54912 * 101.61742 * 206.15435 * 5 3 2 7 7 N 1.47433 * 104.83092 * 36.99356 * 6 5 3 8 8 C 1.34776 * 125.64979 * 155.91016 * 7 6 5 9 9 O 1.21581 * 120.00307 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99533 * 359.96924 * 8 7 6 11 11 C 1.46502 * 119.99339 * 175.09136 * 10 8 7 12 12 H 1.08990 * 109.47605 * 326.58636 * 11 10 8 13 13 C 1.53002 * 109.47118 * 86.58689 * 11 10 8 14 14 C 1.50698 * 109.47074 * 185.71324 * 13 11 10 15 15 H 1.08000 * 120.00209 * 355.55728 * 14 13 11 16 16 C 1.37875 * 119.99825 * 175.55349 * 14 13 11 17 17 N 1.31516 * 119.99937 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00222 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47218 * 89.99863 * 18 16 14 20 20 H 1.48498 * 109.47260 * 210.00293 * 18 16 14 21 21 H 1.48508 * 109.46687 * 330.00111 * 18 16 14 22 22 C 1.50708 * 109.46668 * 206.58342 * 11 10 8 23 23 C 1.38235 * 120.00131 * 319.72632 * 22 11 10 24 24 C 1.38230 * 119.99937 * 179.78594 * 23 22 11 25 25 C 1.38242 * 119.99717 * 0.44824 * 24 23 22 26 26 C 1.38231 * 120.00154 * 359.80477 * 25 24 23 27 27 C 1.38230 * 119.99463 * 140.00503 * 22 11 10 28 28 C 1.47020 * 108.70214 * 335.86723 * 7 6 5 29 29 H 1.09003 * 109.47424 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47151 * 299.99554 * 1 2 3 31 31 H 1.08996 * 109.47612 * 59.99869 * 1 2 3 32 32 H 1.00900 * 110.99936 * 236.05176 * 2 1 3 33 33 H 1.08995 * 110.99756 * 88.06285 * 5 3 2 34 34 H 1.08994 * 111.00418 * 324.25007 * 5 3 2 35 35 H 1.08997 * 110.36953 * 155.82641 * 6 5 3 36 36 H 1.08998 * 110.36703 * 278.04327 * 6 5 3 37 37 H 0.96995 * 120.00480 * 355.09211 * 10 8 7 38 38 H 1.09001 * 109.47051 * 305.71991 * 13 11 10 39 39 H 1.09005 * 109.47248 * 65.71296 * 13 11 10 40 40 H 0.97012 * 119.99713 * 179.97438 * 17 16 14 41 41 H 1.07994 * 119.99860 * 0.02562 * 23 22 11 42 42 H 1.07996 * 120.00526 * 180.27502 * 24 23 22 43 43 H 1.07997 * 119.99999 * 179.83393 * 25 24 23 44 44 H 1.08000 * 120.00144 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.00616 * 359.97438 * 27 22 11 46 46 H 1.09001 * 109.88008 * 120.47800 * 28 7 6 47 47 H 1.09002 * 109.88263 * 241.48933 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3250 2.0430 -0.5363 5 6 3.4200 1.4126 -0.6133 6 6 4.0191 2.6654 0.0732 7 7 3.4787 2.6389 1.4447 8 6 4.0394 3.2245 2.5213 9 8 3.5030 3.1376 3.6090 10 7 5.1948 3.9063 2.3923 11 6 5.7484 4.6327 3.5378 12 1 4.9344 5.0189 4.1510 13 6 6.6114 3.6854 4.3737 14 6 7.0662 4.3921 5.6246 15 1 6.8299 5.4357 5.7715 16 6 7.7838 3.7064 6.5816 17 7 8.0718 2.4358 6.4025 18 14 8.3469 4.5822 8.1325 19 1 7.3026 4.4540 9.1803 20 1 9.6107 3.9700 8.6156 21 1 8.5752 6.0190 7.8344 22 6 6.5935 5.7790 3.0448 23 6 7.4174 5.6086 1.9480 24 6 8.1892 6.6613 1.4931 25 6 8.1442 7.8818 2.1409 26 6 7.3243 8.0506 3.2409 27 6 6.5491 6.9991 3.6931 28 6 2.2264 1.8687 1.4431 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8305 -0.5260 -0.7814 33 1 3.3761 1.5430 -1.6946 34 1 3.9837 0.5170 -0.3525 35 1 5.1071 2.6034 0.0930 36 1 3.7008 3.5703 -0.4443 37 1 5.6598 3.9161 1.5411 38 1 6.0274 2.8059 4.6450 39 1 7.4814 3.3786 3.7930 40 1 8.5771 1.9534 7.0757 41 1 7.4551 4.6542 1.4441 42 1 8.8296 6.5296 0.6335 43 1 8.7492 8.7035 1.7872 44 1 7.2894 9.0039 3.7472 45 1 5.9086 7.1310 4.5525 46 1 2.3139 1.0175 2.1183 47 1 1.3990 2.5059 1.7554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417925430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:06 Heat of formation + Delta-G solvation = -20.310903 kcal Electronic energy + Delta-G solvation = -26690.986756 eV Core-core repulsion = 23065.479040 eV Total energy + Delta-G solvation = -3625.507716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.50671 -40.22226 -39.01463 -36.69327 -35.94174 -34.83844 -32.78296 -31.71231 -31.32121 -30.34969 -29.40892 -26.87580 -25.82813 -24.07770 -23.87614 -23.34730 -21.99925 -21.32190 -20.82130 -19.46480 -18.60844 -17.74451 -17.42509 -16.96677 -16.64777 -16.25138 -16.02151 -15.84734 -15.70996 -15.24088 -14.88075 -14.79165 -14.65399 -14.23383 -14.17182 -14.14162 -13.88227 -13.60596 -13.39621 -13.14823 -12.97635 -12.91752 -12.63888 -12.52028 -12.29382 -12.21887 -12.02182 -11.86946 -11.77006 -11.61453 -11.46014 -11.18065 -10.56928 -10.19302 -9.69869 -9.57670 -9.47263 -9.39253 -8.18962 -6.28330 0.54855 0.61363 1.36722 1.39887 1.49612 1.57424 2.13033 2.40759 2.94812 3.08128 3.16282 3.23648 3.49743 3.62074 3.86933 4.04997 4.14334 4.25074 4.27535 4.35871 4.41438 4.48393 4.51722 4.59237 4.62742 4.73436 4.76296 4.80424 4.83718 4.87400 4.92303 5.07158 5.11677 5.15269 5.23101 5.30180 5.32681 5.47161 5.56394 5.66009 5.69794 5.75818 5.90722 6.00256 6.05572 6.22199 6.23586 6.48631 6.84674 6.98569 7.38880 7.57444 8.93835 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.003683 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.265394 B = 7599.827286 C = 9223.682913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.699 5.699 3 C 0.087 3.913 4 H 0.083 0.917 5 C -0.122 4.122 6 C 0.093 3.907 7 N -0.638 5.638 8 C 0.712 3.288 9 O -0.639 6.639 10 N -0.723 5.723 11 C 0.216 3.784 12 H 0.056 0.944 13 C 0.040 3.960 14 C -0.524 4.524 15 H 0.067 0.933 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.962 3.038 19 H -0.277 1.277 20 H -0.280 1.280 21 H -0.257 1.257 22 C -0.074 4.074 23 C -0.128 4.128 24 C -0.117 4.117 25 C -0.127 4.127 26 C -0.122 4.122 27 C -0.123 4.123 28 C 0.131 3.869 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.360 0.640 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.404 0.596 38 H -0.021 1.021 39 H -0.003 1.003 40 H 0.261 0.739 41 H 0.123 0.877 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.142 0.858 45 H 0.109 0.891 46 H 0.045 0.955 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.635 3.895 -22.259 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.332 5.332 3 C -0.023 4.023 4 H 0.101 0.899 5 C -0.160 4.160 6 C -0.029 4.029 7 N -0.376 5.376 8 C 0.413 3.587 9 O -0.520 6.520 10 N -0.378 5.378 11 C 0.111 3.889 12 H 0.074 0.926 13 C 0.001 3.999 14 C -0.563 4.563 15 H 0.085 0.915 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.786 3.214 19 H -0.203 1.203 20 H -0.206 1.206 21 H -0.181 1.181 22 C -0.074 4.074 23 C -0.146 4.146 24 C -0.134 4.134 25 C -0.145 4.145 26 C -0.140 4.140 27 C -0.142 4.142 28 C 0.006 3.994 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.180 0.820 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.241 0.759 38 H -0.003 1.003 39 H 0.015 0.985 40 H 0.070 0.930 41 H 0.141 0.859 42 H 0.169 0.831 43 H 0.170 0.830 44 H 0.160 0.840 45 H 0.127 0.873 46 H 0.064 0.936 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.878 3.662 -20.675 22.426 hybrid contribution 0.160 -0.064 0.463 0.494 sum -7.717 3.598 -20.212 21.933 Atomic orbital electron populations 1.22281 0.86569 1.02768 1.00623 1.60129 1.09019 1.12875 1.51220 1.22459 0.96881 0.90520 0.92483 0.89942 1.22983 0.93884 0.97444 1.01651 1.22572 0.99663 1.00215 0.80489 1.47509 1.26274 1.55988 1.07872 1.15701 0.81067 0.78809 0.83104 1.90896 1.66367 1.67430 1.27315 1.45129 1.23369 1.54272 1.15057 1.19591 0.93957 0.90075 0.85234 0.92591 1.19175 0.92952 0.93538 0.94191 1.21486 1.33785 0.97272 1.03746 0.91531 1.25939 0.96360 0.95525 1.01962 1.70131 1.40834 1.10238 1.36355 0.85496 0.77620 0.79281 0.79012 1.20334 1.20580 1.18109 1.19771 0.97906 0.93608 0.96148 1.21008 0.97105 0.99730 0.96746 1.21397 0.98647 0.92663 1.00733 1.21469 0.98959 0.98318 0.95733 1.21366 0.96425 0.98803 0.97416 1.21081 1.00741 0.93069 0.99305 1.21837 0.84489 0.93937 0.99098 0.90299 0.92930 0.94232 0.81986 0.85932 0.90139 0.90188 0.89171 0.75887 1.00307 0.98500 0.92987 0.85936 0.83096 0.83037 0.84033 0.87284 0.93601 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 127.69 1.35 1.70 16 2 N -0.70 -11.08 6.68 -508.34 -3.39 -14.47 16 3 C 0.09 1.47 3.28 46.12 0.15 1.62 16 4 H 0.08 1.12 7.83 -2.39 -0.02 1.11 16 5 C -0.12 -1.62 6.46 31.99 0.21 -1.41 16 6 C 0.09 1.75 6.62 86.85 0.57 2.32 16 7 N -0.64 -19.82 3.33 -829.64 -2.76 -22.58 16 8 C 0.71 30.17 8.46 179.05 1.52 31.68 16 9 O -0.64 -34.47 16.36 -3.97 -0.06 -34.54 16 10 N -0.72 -28.21 4.97 -461.41 -2.29 -30.51 16 11 C 0.22 9.98 2.19 44.25 0.10 10.08 16 12 H 0.06 2.89 7.46 -2.39 -0.02 2.87 16 13 C 0.04 2.27 4.73 29.85 0.14 2.41 16 14 C -0.52 -31.31 8.64 25.60 0.22 -31.09 16 15 H 0.07 3.78 6.44 -2.91 -0.02 3.76 16 16 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 17 N -0.93 -60.17 13.29 21.45 0.28 -59.89 16 18 Si 0.96 46.65 29.54 68.60 2.03 48.68 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 22 C -0.07 -2.85 4.49 -19.86 -0.09 -2.94 16 23 C -0.13 -4.08 9.06 22.27 0.20 -3.88 16 24 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 25 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 26 C -0.12 -3.52 10.05 22.27 0.22 -3.29 16 27 C -0.12 -4.50 8.63 22.27 0.19 -4.31 16 28 C 0.13 3.69 6.63 86.75 0.57 4.27 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.04 0.39 8.08 -2.39 -0.02 0.37 16 32 H 0.36 3.99 8.51 -89.69 -0.76 3.23 16 33 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.43 7.23 -2.39 -0.02 1.41 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.40 12.50 5.34 -92.71 -0.50 12.00 16 38 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 39 H 0.00 -0.20 8.13 -2.38 -0.02 -0.21 16 40 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 41 H 0.12 3.55 6.91 -2.91 -0.02 3.53 16 42 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 43 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 44 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 45 H 0.11 4.11 7.83 -2.91 -0.02 4.09 16 46 H 0.05 1.57 8.03 -2.39 -0.02 1.55 16 47 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -84.96 382.09 -0.22 -85.18 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.29 Total: 26.20 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 6.27 Total: 1.92 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -8.16 Total: -127.44 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.06 Total: -34.54 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -84.96 -0.22 -85.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417925430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.871 kcal (2) G-P(sol) polarization free energy of solvation -84.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds