Wall clock time and date at job start Tue Mar 31 2020 11:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99628 * 2 1 4 4 H 1.08997 * 110.89373 * 37.42666 * 3 2 1 5 5 C 1.55155 * 111.03690 * 161.33530 * 3 2 1 6 6 C 1.54327 * 102.94571 * 153.58870 * 5 3 2 7 7 N 1.47024 * 107.26774 * 337.80617 * 6 5 3 8 8 C 1.34780 * 125.64847 * 179.20685 * 7 6 5 9 9 O 1.21578 * 120.00242 * 179.69019 * 8 7 6 10 10 N 1.34779 * 119.99572 * 359.68614 * 8 7 6 11 11 C 1.46509 * 119.99795 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46422 * 35.00819 * 11 10 8 13 13 C 1.52996 * 109.46702 * 155.00388 * 11 10 8 14 14 C 1.50699 * 109.47296 * 295.00125 * 13 11 10 15 15 H 1.07999 * 120.00140 * 359.97438 * 14 13 11 16 16 C 1.37877 * 120.00223 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00106 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00287 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47015 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47298 * 119.99612 * 18 16 14 21 21 H 1.48495 * 109.47362 * 239.99864 * 18 16 14 22 22 C 1.50697 * 109.46924 * 275.00534 * 11 10 8 23 23 C 1.38231 * 120.00135 * 319.72253 * 22 11 10 24 24 C 1.38237 * 119.99947 * 179.79045 * 23 22 11 25 25 C 1.38243 * 119.99759 * 0.44699 * 24 23 22 26 26 C 1.38233 * 119.99701 * 359.80571 * 25 24 23 27 27 C 1.38232 * 120.00549 * 359.97438 * 26 25 24 28 28 C 1.47426 * 108.70449 * 358.94057 * 7 6 5 29 29 H 1.09003 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47107 * 299.99609 * 1 2 3 31 31 H 1.08998 * 109.47613 * 59.99783 * 1 2 3 32 32 H 1.00900 * 110.99858 * 123.95106 * 2 1 3 33 33 H 1.08999 * 110.71965 * 271.94836 * 5 3 2 34 34 H 1.09000 * 110.72417 * 35.04856 * 5 3 2 35 35 H 1.08995 * 109.88184 * 218.39040 * 6 5 3 36 36 H 1.09002 * 109.88385 * 97.22047 * 6 5 3 37 37 H 0.97004 * 120.00543 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47724 * 55.00572 * 13 11 10 39 39 H 1.09005 * 109.46539 * 175.00411 * 13 11 10 40 40 H 0.96999 * 120.00568 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.99981 * 0.02562 * 23 22 11 42 42 H 1.07994 * 120.00319 * 180.27098 * 24 23 22 43 43 H 1.07996 * 119.99840 * 179.83710 * 25 24 23 44 44 H 1.08000 * 119.99549 * 180.02562 * 26 25 24 45 45 H 1.07991 * 120.00104 * 180.02562 * 27 26 25 46 46 H 1.09002 * 110.36518 * 142.96440 * 28 7 6 47 47 H 1.08997 * 110.36787 * 265.28818 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3797 2.0241 0.6189 5 6 3.4758 1.3998 0.4634 6 6 4.0284 2.6674 -0.2219 7 7 3.1569 2.9581 -1.3697 8 6 3.2948 3.9967 -2.2176 9 8 2.5151 4.1363 -3.1398 10 7 4.2973 4.8805 -2.0429 11 6 4.4476 6.0091 -2.9649 12 1 3.4630 6.3536 -3.2810 13 6 5.1846 7.1492 -2.2593 14 6 4.3378 7.6697 -1.1266 15 1 3.3705 7.2315 -0.9299 16 6 4.7975 8.7061 -0.3420 17 7 5.9752 9.2402 -0.5818 18 14 3.7475 9.3518 1.0615 19 1 2.4762 8.5867 1.1213 20 1 4.4813 9.1922 2.3427 21 1 3.4506 10.7894 0.8370 22 6 5.2376 5.5706 -4.1710 23 6 6.3262 4.7327 -4.0170 24 6 7.0482 4.3270 -5.1238 25 6 6.6872 4.7668 -6.3837 26 6 5.6018 5.6089 -6.5371 27 6 4.8770 6.0109 -5.4308 28 6 2.1108 1.9219 -1.4434 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8306 -0.5261 0.7814 33 1 3.5388 1.4893 1.5479 34 1 4.0047 0.5108 0.1199 35 1 5.0471 2.4886 -0.5658 36 1 4.0122 3.5037 0.4771 37 1 4.9197 4.7690 -1.3073 38 1 6.1318 6.7808 -1.8653 39 1 5.3750 7.9535 -2.9700 40 1 6.2988 9.9690 -0.0296 41 1 6.6103 4.3920 -3.0323 42 1 7.8960 3.6689 -5.0039 43 1 7.2529 4.4519 -7.2481 44 1 5.3195 5.9521 -7.5214 45 1 4.0288 6.6685 -5.5507 46 1 1.1641 2.3603 -1.7590 47 1 2.4099 1.1290 -2.1290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417925431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:10 Heat of formation + Delta-G solvation = -1.720398 kcal Electronic energy + Delta-G solvation = -26885.841789 eV Core-core repulsion = 23261.140218 eV Total energy + Delta-G solvation = -3624.701571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06968 -38.91096 -37.73471 -35.20924 -34.85368 -32.70176 -31.34575 -30.46418 -30.19107 -28.84514 -28.20532 -25.47578 -24.62155 -22.85834 -22.21936 -21.90329 -20.95033 -20.05214 -19.36717 -17.85621 -16.84915 -16.52359 -16.12354 -15.60546 -15.39976 -14.87871 -14.68738 -14.56465 -14.43527 -14.17769 -13.77534 -13.37810 -13.08323 -13.02808 -12.85544 -12.77277 -12.47849 -12.38793 -12.13149 -12.07824 -11.50707 -11.46941 -11.23672 -11.10322 -10.94267 -10.89182 -10.70970 -10.57187 -10.41318 -9.75038 -9.63842 -9.25922 -8.83350 -8.56817 -8.47861 -8.43631 -8.16553 -8.08637 -6.08056 -4.10864 1.84087 1.86657 2.96005 3.25530 3.34294 3.38870 3.71583 3.95954 4.20012 4.29470 4.40490 4.55620 4.67291 4.89663 5.11263 5.15256 5.22158 5.28652 5.31781 5.33163 5.38240 5.42936 5.57174 5.59990 5.64934 5.65922 5.81937 5.93039 5.93944 5.97045 6.00288 6.19198 6.37254 6.43209 6.51788 6.64096 6.72589 6.90411 6.91325 7.01847 7.02121 7.17831 7.42963 7.46930 7.55542 7.70842 7.89511 8.28088 8.51944 8.95427 9.14528 9.53846 11.02574 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007918 B = 0.004977 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.417924 B = 5624.411471 C = 8325.962611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.683 5.683 3 C 0.068 3.932 4 H 0.062 0.938 5 C -0.129 4.129 6 C 0.102 3.898 7 N -0.641 5.641 8 C 0.723 3.277 9 O -0.595 6.595 10 N -0.713 5.713 11 C 0.202 3.798 12 H 0.086 0.914 13 C 0.024 3.976 14 C -0.517 4.517 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.070 4.070 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.108 4.108 28 C 0.141 3.859 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.345 0.655 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.396 0.604 38 H 0.024 0.976 39 H 0.035 0.965 40 H 0.261 0.739 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 -16.863 0.022 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.314 5.314 3 C -0.043 4.043 4 H 0.080 0.920 5 C -0.167 4.167 6 C -0.022 4.022 7 N -0.381 5.381 8 C 0.425 3.575 9 O -0.473 6.473 10 N -0.366 5.366 11 C 0.097 3.903 12 H 0.104 0.896 13 C -0.014 4.014 14 C -0.555 4.555 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.072 4.072 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.126 4.126 28 C 0.017 3.983 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.230 0.770 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.138 0.862 46 H 0.090 0.910 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.973 -16.585 -1.336 16.902 hybrid contribution -0.315 0.687 2.156 2.285 sum -3.288 -15.898 0.820 16.255 Atomic orbital electron populations 1.22266 0.87388 1.01926 1.00820 1.60256 1.08111 1.13102 1.49913 1.22743 0.95299 0.89571 0.96709 0.92048 1.22750 0.95064 0.98359 1.00536 1.21909 0.94506 0.97340 0.88436 1.47436 1.32470 1.27554 1.30685 1.15482 0.82069 0.78663 0.81322 1.90873 1.46377 1.76481 1.33607 1.45131 1.31068 1.27241 1.33110 1.20128 0.99138 0.85569 0.85493 0.89589 1.19400 0.95399 0.91180 0.95396 1.21179 1.03509 1.17096 1.13716 0.92368 1.24980 0.95008 0.96507 0.97653 1.69969 1.18207 1.25362 1.39589 0.86559 0.80555 0.78898 0.82141 1.19811 1.21082 1.20968 1.20600 0.95422 0.95579 0.95566 1.20876 0.95216 0.98033 0.98303 1.21029 0.99821 1.00609 0.92928 1.20980 0.98014 0.99411 0.96975 1.21032 0.96142 0.98656 0.98302 1.21016 0.99691 0.99899 0.92009 1.21859 0.91402 0.89480 0.95594 0.91301 0.95830 0.91350 0.83719 0.90185 0.89628 0.91494 0.91132 0.76977 0.95779 0.94640 0.92963 0.86754 0.86832 0.86902 0.86651 0.86188 0.91044 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.57 60.07 0.63 0.83 16 2 N -0.68 -5.85 6.73 -111.72 -0.75 -6.61 16 3 C 0.07 0.68 3.32 -65.56 -0.22 0.47 16 4 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 5 C -0.13 -1.14 6.42 -24.90 -0.16 -1.30 16 6 C 0.10 1.20 6.15 -3.06 -0.02 1.18 16 7 N -0.64 -9.92 3.33 -176.23 -0.59 -10.50 16 8 C 0.72 14.14 8.45 -86.91 -0.73 13.41 16 9 O -0.59 -13.78 16.26 5.30 0.09 -13.70 16 10 N -0.71 -13.68 4.00 -59.81 -0.24 -13.92 16 11 C 0.20 4.27 2.11 -69.08 -0.15 4.12 16 12 H 0.09 2.00 7.44 -51.93 -0.39 1.62 16 13 C 0.02 0.57 4.49 -27.89 -0.13 0.45 16 14 C -0.52 -13.80 8.84 -34.44 -0.30 -14.11 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 18 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.07 -1.36 4.91 -104.63 -0.51 -1.87 16 23 C -0.11 -1.86 9.32 -39.58 -0.37 -2.23 16 24 C -0.13 -1.95 10.05 -39.58 -0.40 -2.34 16 25 C -0.14 -2.01 10.05 -39.58 -0.40 -2.41 16 26 C -0.12 -1.94 10.05 -39.59 -0.40 -2.33 16 27 C -0.11 -1.95 9.67 -39.58 -0.38 -2.34 16 28 C 0.14 1.91 6.55 -2.53 -0.02 1.90 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.17 8.09 -51.93 -0.42 -0.25 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.34 2.30 8.61 -39.29 -0.34 1.96 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 7.02 7.59 -40.82 -0.31 6.71 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.11 1.89 7.73 -52.49 -0.41 1.49 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 45 H 0.12 2.09 8.04 -52.49 -0.42 1.67 16 46 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -32.37 387.83 -11.30 -43.67 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.73 Total: 9.04 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -3.64 Total: -5.03 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.84 Total: -55.91 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.37 -11.30 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417925431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.948 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds