Wall clock time and date at job start Tue Mar 31 2020 11:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99628 * 2 1 4 4 H 1.08997 * 110.89373 * 37.42666 * 3 2 1 5 5 C 1.55155 * 111.03690 * 161.33530 * 3 2 1 6 6 C 1.54327 * 102.94571 * 153.58870 * 5 3 2 7 7 N 1.47024 * 107.26774 * 337.80617 * 6 5 3 8 8 C 1.34780 * 125.64847 * 179.20685 * 7 6 5 9 9 O 1.21578 * 120.00242 * 179.69019 * 8 7 6 10 10 N 1.34779 * 119.99572 * 359.68614 * 8 7 6 11 11 C 1.46509 * 119.99795 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46422 * 35.00819 * 11 10 8 13 13 C 1.52996 * 109.46702 * 155.00388 * 11 10 8 14 14 C 1.50699 * 109.47296 * 295.00125 * 13 11 10 15 15 H 1.07999 * 120.00140 * 359.97438 * 14 13 11 16 16 C 1.37877 * 120.00223 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00106 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00287 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47015 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47298 * 119.99612 * 18 16 14 21 21 H 1.48495 * 109.47362 * 239.99864 * 18 16 14 22 22 C 1.50697 * 109.46924 * 275.00534 * 11 10 8 23 23 C 1.38231 * 120.00135 * 319.72253 * 22 11 10 24 24 C 1.38237 * 119.99947 * 179.79045 * 23 22 11 25 25 C 1.38243 * 119.99759 * 0.44699 * 24 23 22 26 26 C 1.38233 * 119.99701 * 359.80571 * 25 24 23 27 27 C 1.38232 * 120.00549 * 359.97438 * 26 25 24 28 28 C 1.47426 * 108.70449 * 358.94057 * 7 6 5 29 29 H 1.09003 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47107 * 299.99609 * 1 2 3 31 31 H 1.08998 * 109.47613 * 59.99783 * 1 2 3 32 32 H 1.00900 * 110.99858 * 123.95106 * 2 1 3 33 33 H 1.08999 * 110.71965 * 271.94836 * 5 3 2 34 34 H 1.09000 * 110.72417 * 35.04856 * 5 3 2 35 35 H 1.08995 * 109.88184 * 218.39040 * 6 5 3 36 36 H 1.09002 * 109.88385 * 97.22047 * 6 5 3 37 37 H 0.97004 * 120.00543 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47724 * 55.00572 * 13 11 10 39 39 H 1.09005 * 109.46539 * 175.00411 * 13 11 10 40 40 H 0.96999 * 120.00568 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.99981 * 0.02562 * 23 22 11 42 42 H 1.07994 * 120.00319 * 180.27098 * 24 23 22 43 43 H 1.07996 * 119.99840 * 179.83710 * 25 24 23 44 44 H 1.08000 * 119.99549 * 180.02562 * 26 25 24 45 45 H 1.07991 * 120.00104 * 180.02562 * 27 26 25 46 46 H 1.09002 * 110.36518 * 142.96440 * 28 7 6 47 47 H 1.08997 * 110.36787 * 265.28818 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3797 2.0241 0.6189 5 6 3.4758 1.3998 0.4634 6 6 4.0284 2.6674 -0.2219 7 7 3.1569 2.9581 -1.3697 8 6 3.2948 3.9967 -2.2176 9 8 2.5151 4.1363 -3.1398 10 7 4.2973 4.8805 -2.0429 11 6 4.4476 6.0091 -2.9649 12 1 3.4630 6.3536 -3.2810 13 6 5.1846 7.1492 -2.2593 14 6 4.3378 7.6697 -1.1266 15 1 3.3705 7.2315 -0.9299 16 6 4.7975 8.7061 -0.3420 17 7 5.9752 9.2402 -0.5818 18 14 3.7475 9.3518 1.0615 19 1 2.4762 8.5867 1.1213 20 1 4.4813 9.1922 2.3427 21 1 3.4506 10.7894 0.8370 22 6 5.2376 5.5706 -4.1710 23 6 6.3262 4.7327 -4.0170 24 6 7.0482 4.3270 -5.1238 25 6 6.6872 4.7668 -6.3837 26 6 5.6018 5.6089 -6.5371 27 6 4.8770 6.0109 -5.4308 28 6 2.1108 1.9219 -1.4434 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8306 -0.5261 0.7814 33 1 3.5388 1.4893 1.5479 34 1 4.0047 0.5108 0.1199 35 1 5.0471 2.4886 -0.5658 36 1 4.0122 3.5037 0.4771 37 1 4.9197 4.7690 -1.3073 38 1 6.1318 6.7808 -1.8653 39 1 5.3750 7.9535 -2.9700 40 1 6.2988 9.9690 -0.0296 41 1 6.6103 4.3920 -3.0323 42 1 7.8960 3.6689 -5.0039 43 1 7.2529 4.4519 -7.2481 44 1 5.3195 5.9521 -7.5214 45 1 4.0288 6.6685 -5.5507 46 1 1.1641 2.3603 -1.7590 47 1 2.4099 1.1290 -2.1290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417925431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:09 Heat of formation + Delta-G solvation = -22.493597 kcal Electronic energy + Delta-G solvation = -26886.742583 eV Core-core repulsion = 23261.140218 eV Total energy + Delta-G solvation = -3625.602365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45674 -40.16951 -38.94715 -36.78900 -35.91284 -34.71680 -32.73361 -31.72469 -31.31665 -30.52230 -29.33118 -26.85588 -25.91616 -23.92385 -23.79863 -23.31914 -21.95253 -21.39911 -20.82960 -19.22381 -18.59933 -17.80343 -17.46217 -17.12692 -16.56287 -16.30955 -16.06040 -15.81690 -15.79678 -15.20967 -14.87686 -14.68636 -14.50811 -14.22710 -14.18649 -13.99549 -13.85192 -13.64629 -13.55663 -13.41325 -12.96383 -12.92050 -12.63718 -12.49119 -12.24489 -12.14518 -12.07132 -11.87602 -11.77856 -11.59523 -11.33411 -11.27699 -10.59950 -10.13860 -9.75477 -9.58934 -9.51155 -9.41434 -8.20930 -6.30924 0.51532 0.56602 1.36477 1.39407 1.50879 1.63303 2.18317 2.38997 2.91524 3.08208 3.15647 3.23871 3.53621 3.66850 3.99739 4.03740 4.09163 4.21167 4.26190 4.32251 4.41476 4.44408 4.52849 4.59191 4.64863 4.65937 4.75015 4.78728 4.79321 4.88169 4.94290 5.05486 5.12903 5.13476 5.20126 5.27180 5.30159 5.42335 5.61460 5.62112 5.64508 5.77197 5.90604 5.96570 6.10565 6.16366 6.21171 6.47328 6.81067 7.04108 7.37757 7.61108 8.90019 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007918 B = 0.004977 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.417924 B = 5624.411471 C = 8325.962611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.684 5.684 3 C 0.079 3.921 4 H 0.057 0.943 5 C -0.113 4.113 6 C 0.093 3.907 7 N -0.639 5.639 8 C 0.717 3.283 9 O -0.639 6.639 10 N -0.708 5.708 11 C 0.218 3.782 12 H 0.053 0.947 13 C 0.040 3.960 14 C -0.528 4.528 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.957 3.043 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.281 1.281 22 C -0.098 4.098 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.134 4.134 28 C 0.137 3.863 29 H 0.086 0.914 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.360 0.640 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.403 0.597 38 H 0.013 0.987 39 H 0.006 0.994 40 H 0.264 0.736 41 H 0.118 0.882 42 H 0.147 0.853 43 H 0.152 0.848 44 H 0.144 0.856 45 H 0.112 0.888 46 H 0.048 0.952 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 -18.982 0.876 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.317 5.317 3 C -0.032 4.032 4 H 0.075 0.925 5 C -0.151 4.151 6 C -0.030 4.030 7 N -0.378 5.378 8 C 0.419 3.581 9 O -0.521 6.521 10 N -0.360 5.360 11 C 0.112 3.888 12 H 0.072 0.928 13 C 0.002 3.998 14 C -0.566 4.566 15 H 0.067 0.933 16 C -0.186 4.186 17 N -0.564 5.564 18 Si 0.782 3.218 19 H -0.197 1.197 20 H -0.198 1.198 21 H -0.207 1.207 22 C -0.099 4.099 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.152 4.152 28 C 0.013 3.987 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.238 0.762 38 H 0.031 0.969 39 H 0.025 0.975 40 H 0.073 0.927 41 H 0.136 0.864 42 H 0.165 0.835 43 H 0.170 0.830 44 H 0.162 0.838 45 H 0.130 0.870 46 H 0.066 0.934 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.051 -18.751 -0.432 18.868 hybrid contribution -0.589 1.303 1.816 2.311 sum -2.640 -17.448 1.384 17.701 Atomic orbital electron populations 1.22285 0.86930 1.02908 1.00313 1.60166 1.08620 1.12038 1.50878 1.22546 0.96479 0.90336 0.93822 0.92485 1.22736 0.93512 0.97086 1.01775 1.22217 0.94694 0.98904 0.87201 1.47467 1.33310 1.26418 1.30574 1.15624 0.81524 0.79445 0.81539 1.90827 1.47807 1.77764 1.35732 1.44907 1.31331 1.26726 1.33053 1.19611 0.97268 0.85414 0.86495 0.92833 1.19126 0.94922 0.91442 0.94293 1.21377 1.03318 1.17420 1.14463 0.93297 1.25747 0.96119 0.96634 1.00071 1.70072 1.19680 1.25905 1.40769 0.85530 0.78871 0.78055 0.79341 1.19734 1.19788 1.20691 1.20482 0.96703 0.97701 0.95051 1.21028 0.95120 0.98080 0.99595 1.21436 1.00083 1.00296 0.92410 1.21471 0.97298 0.97841 0.98084 1.21386 0.95897 0.98242 0.98612 1.21176 1.00506 1.00767 0.92800 1.21986 0.89774 0.88684 0.98266 0.89574 0.95294 0.92926 0.81935 0.87491 0.88178 0.90316 0.91448 0.76179 0.96858 0.97548 0.92656 0.86411 0.83534 0.82994 0.83796 0.87033 0.93387 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 127.69 1.35 1.70 16 2 N -0.68 -10.28 6.73 -507.37 -3.42 -13.69 16 3 C 0.08 1.49 3.32 46.31 0.15 1.64 16 4 H 0.06 1.15 7.92 -2.39 -0.02 1.13 16 5 C -0.11 -1.69 6.42 31.78 0.20 -1.48 16 6 C 0.09 2.06 6.15 86.73 0.53 2.60 16 7 N -0.64 -20.05 3.33 -829.75 -2.76 -22.81 16 8 C 0.72 29.33 8.45 179.05 1.51 30.85 16 9 O -0.64 -31.41 16.26 -3.96 -0.06 -31.47 16 10 N -0.71 -28.47 4.00 -461.41 -1.85 -30.31 16 11 C 0.22 9.85 2.11 44.24 0.09 9.94 16 12 H 0.05 2.73 7.44 -2.39 -0.02 2.71 16 13 C 0.04 2.04 4.49 29.85 0.13 2.18 16 14 C -0.53 -29.25 8.84 25.60 0.23 -29.03 16 15 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 16 C 0.01 0.73 5.46 84.65 0.46 1.19 16 17 N -0.92 -54.04 13.29 21.45 0.28 -53.75 16 18 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 C -0.10 -3.96 4.91 -19.87 -0.10 -4.06 16 23 C -0.12 -4.22 9.32 22.27 0.21 -4.01 16 24 C -0.12 -3.58 10.05 22.27 0.22 -3.36 16 25 C -0.13 -3.47 10.05 22.27 0.22 -3.24 16 26 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 27 C -0.13 -5.05 9.67 22.27 0.22 -4.84 16 28 C 0.14 3.76 6.55 86.86 0.57 4.33 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.03 0.38 8.09 -2.39 -0.02 0.36 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.36 3.66 8.61 -89.69 -0.77 2.89 16 33 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.40 14.78 7.59 -92.71 -0.70 14.08 16 38 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.12 3.92 7.73 -2.91 -0.02 3.89 16 42 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 45 H 0.11 4.21 8.04 -2.91 -0.02 4.19 16 46 H 0.05 1.52 8.04 -2.39 -0.02 1.50 16 47 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -73.28 387.83 -0.05 -73.34 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.51 Total: 32.03 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 6.23 Total: 0.90 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -7.74 Total: -120.57 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.06 Total: -31.47 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -73.28 -0.05 -73.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417925431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.846 kcal (2) G-P(sol) polarization free energy of solvation -73.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds