Wall clock time and date at job start Tue Mar 31 2020 11:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46508 * 119.99834 * 2 1 4 4 C 1.53004 * 109.46909 * 270.00030 * 3 2 1 5 5 H 1.09002 * 110.33208 * 64.30387 * 4 3 2 6 6 C 1.54906 * 110.37176 * 186.55425 * 4 3 2 7 7 C 1.55256 * 101.60064 * 155.81711 * 6 4 3 8 8 C 1.54320 * 103.08400 * 324.49083 * 7 6 4 9 9 N 1.47442 * 107.23672 * 22.20265 * 8 7 6 10 10 C 1.46892 * 111.00345 * 123.25834 * 9 8 7 11 11 C 1.34772 * 120.00154 * 180.02562 * 2 1 3 12 12 O 1.21583 * 119.99811 * 180.02562 * 11 2 1 13 13 N 1.34779 * 119.99853 * 359.97438 * 11 2 1 14 14 C 1.39243 * 119.99996 * 185.70610 * 13 11 2 15 15 C 1.39483 * 119.83271 * 34.62051 * 14 13 11 16 16 C 1.36373 * 120.16717 * 179.97438 * 15 14 13 17 17 C 1.40871 * 119.82952 * 0.02562 * 16 15 14 18 18 C 1.41156 * 120.16577 * 179.72565 * 17 16 15 19 19 H 1.08000 * 120.00023 * 325.80651 * 18 17 16 20 20 C 1.39893 * 120.00195 * 145.80007 * 18 17 16 21 21 N 1.30879 * 119.99797 * 354.43608 * 20 18 17 22 22 Si 1.86797 * 120.00266 * 174.43834 * 20 18 17 23 23 H 1.48499 * 109.46960 * 59.99925 * 22 20 18 24 24 H 1.48499 * 109.47297 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46975 * 300.00276 * 22 20 18 26 26 C 1.40867 * 119.67273 * 0.02562 * 17 16 15 27 27 C 1.36379 * 119.82862 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47264 * 270.00076 * 1 2 3 29 29 H 1.09004 * 109.47028 * 29.99915 * 1 2 3 30 30 H 1.08999 * 109.47220 * 149.99860 * 1 2 3 31 31 H 1.09003 * 109.46827 * 29.99713 * 3 2 1 32 32 H 1.08990 * 109.46988 * 150.00123 * 3 2 1 33 33 H 1.09002 * 110.99074 * 273.99354 * 6 4 3 34 34 H 1.09004 * 110.98861 * 37.80602 * 6 4 3 35 35 H 1.09000 * 110.74704 * 206.05259 * 7 6 4 36 36 H 1.09001 * 110.75778 * 82.92765 * 7 6 4 37 37 H 1.09008 * 109.88906 * 262.79603 * 8 7 6 38 38 H 1.08994 * 109.88920 * 141.60961 * 8 7 6 39 39 H 1.09005 * 109.47226 * 299.16183 * 10 9 8 40 40 H 1.09001 * 109.47220 * 59.15788 * 10 9 8 41 41 H 1.08996 * 109.47401 * 179.16064 * 10 9 8 42 42 H 0.96997 * 120.00082 * 5.70196 * 13 11 2 43 43 H 1.07995 * 119.91629 * 0.02562 * 15 14 13 44 44 H 1.07997 * 120.08864 * 180.02562 * 16 15 14 45 45 H 0.96997 * 120.00396 * 179.97438 * 21 20 18 46 46 H 1.07997 * 120.09173 * 179.97438 * 26 17 16 47 47 H 1.07999 * 119.91603 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5090 1.9184 -1.9473 6 6 3.3659 2.9612 -1.4701 7 6 3.9954 2.8570 -2.8855 8 6 4.1594 1.3354 -3.0838 9 7 3.2090 0.6712 -2.1730 10 6 2.3029 -0.2167 -2.9136 11 6 2.1389 -1.1671 -0.0005 12 8 3.3547 -1.1671 -0.0001 13 7 1.4650 -2.3344 -0.0005 14 6 2.1561 -3.5373 0.1188 15 6 3.3018 -3.6036 0.9117 16 6 3.9836 -4.7783 1.0338 17 6 3.5283 -5.9265 0.3563 18 6 4.2318 -7.1446 0.4731 19 1 5.3076 -7.1399 0.5688 20 6 3.5357 -8.3580 0.4650 21 7 2.2269 -8.3615 0.4590 22 14 4.4740 -9.9732 0.4628 23 1 5.3224 -10.0545 1.6788 24 1 3.5121 -11.1045 0.4532 25 1 5.3335 -10.0447 -0.7461 26 6 2.3711 -5.8513 -0.4434 27 6 1.6998 -4.6696 -0.5559 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1385 0.5138 33 1 2.7803 3.8748 -1.3676 34 1 4.1325 2.9020 -0.6974 35 1 4.9639 3.3561 -2.9151 36 1 3.3255 3.2736 -3.6378 37 1 5.1786 1.0371 -2.8380 38 1 3.9315 1.0692 -4.1158 39 1 1.7287 0.3678 -3.6325 40 1 2.8854 -0.9716 -3.4418 41 1 1.6224 -0.7051 -2.2162 42 1 0.4986 -2.3364 -0.0836 43 1 3.6493 -2.7227 1.4308 44 1 4.8703 -4.8284 1.6483 45 1 1.7441 -9.2028 0.4530 46 1 2.0163 -6.7273 -0.9661 47 1 0.8122 -4.6105 -1.1683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421058604.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:50 Heat of formation + Delta-G solvation = 17.990784 kcal Electronic energy + Delta-G solvation = -27169.054796 eV Core-core repulsion = 23545.207966 eV Total energy + Delta-G solvation = -3623.846830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.24593 -38.85731 -37.32457 -35.14535 -34.27295 -32.79918 -32.09738 -30.49385 -29.45183 -28.63995 -26.87871 -25.91684 -25.07270 -23.98616 -21.45191 -21.20984 -20.81685 -20.06543 -19.05081 -17.86061 -17.16286 -16.40445 -16.31045 -15.83694 -15.17453 -14.99876 -14.63591 -14.10287 -13.87240 -13.63578 -13.43646 -13.34436 -13.09901 -12.71248 -12.69735 -12.57566 -12.42003 -12.01674 -11.89389 -11.66999 -11.51851 -11.35676 -11.27242 -11.17675 -11.07517 -11.03638 -10.84664 -10.78789 -10.42848 -9.93439 -9.64400 -9.28471 -9.10844 -8.63024 -8.53485 -7.98454 -7.44484 -6.73289 -6.57309 -4.21364 2.77587 3.04300 3.13659 3.17433 3.17765 3.25071 3.89330 3.97901 4.05190 4.44228 4.51476 4.59648 4.80154 4.82996 5.01826 5.08051 5.17228 5.28264 5.36795 5.40202 5.46589 5.55930 5.58160 5.62255 5.70356 5.75459 5.77368 5.85171 6.04239 6.11475 6.15760 6.27024 6.48926 6.63338 6.88274 6.97916 7.11675 7.14622 7.18570 7.26388 7.37007 7.45749 7.73140 7.96751 8.06099 8.17349 8.40328 8.59876 8.72257 9.01682 9.05281 9.31214 10.38860 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024294 B = 0.002913 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.272713 B = 9610.125233 C =10057.570793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.639 5.639 3 C 0.152 3.848 4 C 0.055 3.945 5 H 0.049 0.951 6 C -0.122 4.122 7 C -0.140 4.140 8 C 0.042 3.958 9 N -0.503 5.503 10 C 0.030 3.970 11 C 0.699 3.301 12 O -0.548 6.548 13 N -0.676 5.676 14 C 0.035 3.965 15 C -0.084 4.084 16 C -0.202 4.202 17 C 0.103 3.897 18 C -0.467 4.467 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.815 5.815 22 Si 0.911 3.089 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.266 1.266 26 C -0.137 4.137 27 C -0.124 4.124 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.014 0.986 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.387 0.613 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.277 0.723 46 H 0.119 0.881 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 19.302 -4.581 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.378 5.378 3 C 0.027 3.973 4 C -0.055 4.055 5 H 0.066 0.934 6 C -0.160 4.160 7 C -0.179 4.179 8 C -0.086 4.086 9 N -0.227 5.227 10 C -0.119 4.119 11 C 0.401 3.599 12 O -0.421 6.421 13 N -0.324 5.324 14 C -0.058 4.058 15 C -0.104 4.104 16 C -0.223 4.223 17 C 0.101 3.899 18 C -0.498 4.498 19 H 0.093 0.907 20 C -0.142 4.142 21 N -0.442 5.442 22 Si 0.736 3.264 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.157 4.157 27 C -0.145 4.145 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.032 0.968 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.222 0.778 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.088 0.912 46 H 0.137 0.863 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.352 18.814 -4.201 19.762 hybrid contribution -0.873 -0.344 -0.735 1.192 sum -5.224 18.470 -4.936 19.819 Atomic orbital electron populations 1.21646 0.81015 1.02255 1.01381 1.47008 1.05414 1.05321 1.80099 1.21243 0.97714 0.83511 0.94803 1.23062 0.95503 0.90759 0.96208 0.93351 1.22704 0.98992 0.96737 0.97597 1.22777 1.01219 0.96957 0.96921 1.22843 0.98393 0.92173 0.95146 1.63378 1.16232 1.17567 1.25528 1.22532 0.96071 0.96534 0.96777 1.15782 0.85620 0.79956 0.78512 1.90943 1.10879 1.85173 1.55105 1.42372 1.08944 1.04033 1.77051 1.17000 0.98853 0.83859 1.06078 1.20263 0.95350 0.97022 0.97739 1.20781 1.02648 0.93890 1.04937 1.17633 0.91691 0.92052 0.88564 1.19428 0.94873 0.90233 1.45275 0.90745 1.25818 0.94872 1.00884 0.92633 1.69782 1.07294 1.28641 1.38510 0.86336 0.79894 0.80443 0.79744 1.19196 1.20545 1.19087 1.20895 0.98253 0.95672 1.00889 1.20227 1.00366 0.93447 1.00458 0.92931 0.91583 0.91863 0.90987 0.89199 0.91008 0.90198 0.90825 0.91930 0.90473 0.93250 0.96789 0.91670 0.91233 0.77812 0.88035 0.88752 0.91231 0.86286 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.16 59.85 0.61 1.36 16 2 N -0.64 -8.47 1.95 -187.35 -0.37 -8.84 16 3 C 0.15 1.77 5.23 -4.04 -0.02 1.75 16 4 C 0.05 0.60 2.80 -66.18 -0.19 0.42 16 5 H 0.05 0.51 7.77 -51.93 -0.40 0.10 16 6 C -0.12 -1.08 6.51 -24.53 -0.16 -1.24 16 7 C -0.14 -1.26 6.94 -24.84 -0.17 -1.43 16 8 C 0.04 0.50 6.90 -2.84 -0.02 0.48 16 9 N -0.50 -7.02 3.87 -231.60 -0.90 -7.92 16 10 C 0.03 0.42 8.53 60.06 0.51 0.93 16 11 C 0.70 12.59 5.39 -86.92 -0.47 12.12 16 12 O -0.55 -12.10 12.85 5.29 0.07 -12.03 16 13 N -0.68 -12.36 5.18 -14.10 -0.07 -12.43 16 14 C 0.03 0.79 6.26 -83.57 -0.52 0.27 16 15 C -0.08 -2.06 8.57 -39.79 -0.34 -2.40 16 16 C -0.20 -5.28 9.74 -39.26 -0.38 -5.67 16 17 C 0.10 2.83 5.50 -106.80 -0.59 2.24 16 18 C -0.47 -12.80 9.02 -37.86 -0.34 -13.14 16 19 H 0.07 1.97 7.85 -52.49 -0.41 1.56 16 20 C 0.07 1.88 5.31 -17.34 -0.09 1.79 16 21 N -0.81 -21.56 10.97 55.54 0.61 -20.96 16 22 Si 0.91 19.40 29.56 -169.99 -5.03 14.38 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.14 -3.60 8.57 -39.26 -0.34 -3.93 16 27 C -0.12 -2.90 9.90 -39.79 -0.39 -3.29 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.06 0.57 6.29 -51.93 -0.33 0.24 16 31 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.09 1.28 7.37 -51.93 -0.38 0.89 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.75 8.02 -51.93 -0.42 0.34 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 38 H 0.05 0.55 7.58 -51.93 -0.39 0.16 16 39 H 0.01 0.17 8.09 -51.93 -0.42 -0.25 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.05 5.23 -51.93 -0.27 0.77 16 42 H 0.39 5.82 6.51 -40.82 -0.27 5.55 16 43 H 0.10 2.50 6.50 -52.49 -0.34 2.16 16 44 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 45 H 0.28 6.73 8.30 -40.82 -0.34 6.40 16 46 H 0.12 3.21 6.46 -52.49 -0.34 2.87 16 47 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -31.64 368.10 -10.37 -42.01 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.33 Total: 9.99 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.90 Total: -9.74 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.72 Total: -50.14 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.03 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.64 -10.37 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421058604.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.000 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds