Wall clock time and date at job start Tue Mar 31 2020 11:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46508 * 119.99834 * 2 1 4 4 C 1.53004 * 109.46909 * 270.00030 * 3 2 1 5 5 H 1.09002 * 110.33208 * 64.30387 * 4 3 2 6 6 C 1.54906 * 110.37176 * 186.55425 * 4 3 2 7 7 C 1.55256 * 101.60064 * 155.81711 * 6 4 3 8 8 C 1.54320 * 103.08400 * 324.49083 * 7 6 4 9 9 N 1.47442 * 107.23672 * 22.20265 * 8 7 6 10 10 C 1.46892 * 111.00345 * 123.25834 * 9 8 7 11 11 C 1.34772 * 120.00154 * 180.02562 * 2 1 3 12 12 O 1.21583 * 119.99811 * 180.02562 * 11 2 1 13 13 N 1.34779 * 119.99853 * 359.97438 * 11 2 1 14 14 C 1.39243 * 119.99996 * 185.70610 * 13 11 2 15 15 C 1.39483 * 119.83271 * 34.62051 * 14 13 11 16 16 C 1.36373 * 120.16717 * 179.97438 * 15 14 13 17 17 C 1.40871 * 119.82952 * 0.02562 * 16 15 14 18 18 C 1.41156 * 120.16577 * 179.72565 * 17 16 15 19 19 H 1.08000 * 120.00023 * 325.80651 * 18 17 16 20 20 C 1.39893 * 120.00195 * 145.80007 * 18 17 16 21 21 N 1.30879 * 119.99797 * 354.43608 * 20 18 17 22 22 Si 1.86797 * 120.00266 * 174.43834 * 20 18 17 23 23 H 1.48499 * 109.46960 * 59.99925 * 22 20 18 24 24 H 1.48499 * 109.47297 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46975 * 300.00276 * 22 20 18 26 26 C 1.40867 * 119.67273 * 0.02562 * 17 16 15 27 27 C 1.36379 * 119.82862 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47264 * 270.00076 * 1 2 3 29 29 H 1.09004 * 109.47028 * 29.99915 * 1 2 3 30 30 H 1.08999 * 109.47220 * 149.99860 * 1 2 3 31 31 H 1.09003 * 109.46827 * 29.99713 * 3 2 1 32 32 H 1.08990 * 109.46988 * 150.00123 * 3 2 1 33 33 H 1.09002 * 110.99074 * 273.99354 * 6 4 3 34 34 H 1.09004 * 110.98861 * 37.80602 * 6 4 3 35 35 H 1.09000 * 110.74704 * 206.05259 * 7 6 4 36 36 H 1.09001 * 110.75778 * 82.92765 * 7 6 4 37 37 H 1.09008 * 109.88906 * 262.79603 * 8 7 6 38 38 H 1.08994 * 109.88920 * 141.60961 * 8 7 6 39 39 H 1.09005 * 109.47226 * 299.16183 * 10 9 8 40 40 H 1.09001 * 109.47220 * 59.15788 * 10 9 8 41 41 H 1.08996 * 109.47401 * 179.16064 * 10 9 8 42 42 H 0.96997 * 120.00082 * 5.70196 * 13 11 2 43 43 H 1.07995 * 119.91629 * 0.02562 * 15 14 13 44 44 H 1.07997 * 120.08864 * 180.02562 * 16 15 14 45 45 H 0.96997 * 120.00396 * 179.97438 * 21 20 18 46 46 H 1.07997 * 120.09173 * 179.97438 * 26 17 16 47 47 H 1.07999 * 119.91603 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5090 1.9184 -1.9473 6 6 3.3659 2.9612 -1.4701 7 6 3.9954 2.8570 -2.8855 8 6 4.1594 1.3354 -3.0838 9 7 3.2090 0.6712 -2.1730 10 6 2.3029 -0.2167 -2.9136 11 6 2.1389 -1.1671 -0.0005 12 8 3.3547 -1.1671 -0.0001 13 7 1.4650 -2.3344 -0.0005 14 6 2.1561 -3.5373 0.1188 15 6 3.3018 -3.6036 0.9117 16 6 3.9836 -4.7783 1.0338 17 6 3.5283 -5.9265 0.3563 18 6 4.2318 -7.1446 0.4731 19 1 5.3076 -7.1399 0.5688 20 6 3.5357 -8.3580 0.4650 21 7 2.2269 -8.3615 0.4590 22 14 4.4740 -9.9732 0.4628 23 1 5.3224 -10.0545 1.6788 24 1 3.5121 -11.1045 0.4532 25 1 5.3335 -10.0447 -0.7461 26 6 2.3711 -5.8513 -0.4434 27 6 1.6998 -4.6696 -0.5559 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1385 0.5138 33 1 2.7803 3.8748 -1.3676 34 1 4.1325 2.9020 -0.6974 35 1 4.9639 3.3561 -2.9151 36 1 3.3255 3.2736 -3.6378 37 1 5.1786 1.0371 -2.8380 38 1 3.9315 1.0692 -4.1158 39 1 1.7287 0.3678 -3.6325 40 1 2.8854 -0.9716 -3.4418 41 1 1.6224 -0.7051 -2.2162 42 1 0.4986 -2.3364 -0.0836 43 1 3.6493 -2.7227 1.4308 44 1 4.8703 -4.8284 1.6483 45 1 1.7441 -9.2028 0.4530 46 1 2.0163 -6.7273 -0.9661 47 1 0.8122 -4.6105 -1.1683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421058604.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:49 Heat of formation + Delta-G solvation = -0.829919 kcal Electronic energy + Delta-G solvation = -27169.870923 eV Core-core repulsion = 23545.207966 eV Total energy + Delta-G solvation = -3624.662957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.56081 -40.01983 -39.02436 -36.43056 -35.97870 -34.59578 -33.00262 -31.64446 -31.33010 -30.41030 -27.74881 -27.21164 -26.43400 -25.32763 -23.26618 -22.58765 -21.99259 -21.27518 -20.38331 -19.28368 -19.04505 -17.93612 -17.28629 -16.99872 -16.84109 -16.27978 -15.82926 -15.66602 -15.22689 -15.04358 -14.56596 -14.52683 -14.29232 -14.20084 -14.01484 -13.89252 -13.56908 -13.50496 -13.29885 -13.24369 -12.82002 -12.78195 -12.62461 -12.36961 -12.30711 -12.15584 -12.04072 -11.92056 -11.79461 -11.56682 -11.52689 -11.09651 -10.84499 -10.43191 -9.61596 -9.43121 -8.97681 -8.62686 -8.50687 -6.25539 0.91301 1.16859 1.40401 1.51178 1.51809 1.85229 2.26358 2.42725 2.86742 3.03309 3.22883 3.73363 3.74678 3.78944 4.06937 4.20505 4.28423 4.35101 4.39060 4.40983 4.42548 4.50437 4.54524 4.63717 4.69723 4.83591 4.89380 4.92461 4.94113 4.96948 4.97547 5.07526 5.15274 5.18790 5.20210 5.35334 5.37508 5.49500 5.64965 5.73527 5.87215 6.09269 6.15618 6.19475 6.20916 6.28454 6.44531 6.70915 6.99990 7.05504 7.19541 7.87595 8.46697 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024294 B = 0.002913 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.272713 B = 9610.125233 C =10057.570793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.629 5.629 3 C 0.148 3.852 4 C 0.056 3.944 5 H 0.065 0.935 6 C -0.115 4.115 7 C -0.131 4.131 8 C 0.038 3.962 9 N -0.537 5.537 10 C 0.037 3.963 11 C 0.698 3.302 12 O -0.594 6.594 13 N -0.670 5.670 14 C 0.055 3.945 15 C -0.094 4.094 16 C -0.219 4.219 17 C 0.071 3.929 18 C -0.506 4.506 19 H 0.068 0.932 20 C 0.033 3.967 21 N -0.842 5.842 22 Si 0.984 3.016 23 H -0.264 1.264 24 H -0.266 1.266 25 H -0.262 1.262 26 C -0.152 4.152 27 C -0.122 4.122 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.035 0.965 40 H 0.038 0.962 41 H 0.059 0.941 42 H 0.406 0.594 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.285 0.715 46 H 0.107 0.893 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 21.314 -5.082 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.367 5.367 3 C 0.024 3.976 4 C -0.054 4.054 5 H 0.083 0.917 6 C -0.154 4.154 7 C -0.169 4.169 8 C -0.090 4.090 9 N -0.261 5.261 10 C -0.112 4.112 11 C 0.400 3.600 12 O -0.471 6.471 13 N -0.320 5.320 14 C -0.039 4.039 15 C -0.114 4.114 16 C -0.239 4.239 17 C 0.069 3.931 18 C -0.537 4.537 19 H 0.087 0.913 20 C -0.180 4.180 21 N -0.470 5.470 22 Si 0.805 3.195 23 H -0.188 1.188 24 H -0.190 1.190 25 H -0.187 1.187 26 C -0.172 4.172 27 C -0.143 4.143 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.244 0.756 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.125 0.875 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.454 20.897 -4.704 22.371 hybrid contribution -0.309 -0.779 -0.580 1.019 sum -6.763 20.118 -5.284 21.872 Atomic orbital electron populations 1.21950 0.78044 1.04057 1.02851 1.47017 1.07227 1.04105 1.78349 1.21457 0.96983 0.83487 0.95633 1.23113 0.96317 0.90742 0.95195 0.91690 1.22709 0.98657 0.96932 0.97086 1.22737 1.02252 0.94505 0.97449 1.22829 0.96889 0.94424 0.94848 1.63296 1.17166 1.19211 1.26455 1.22382 0.95667 0.96398 0.96724 1.15941 0.85159 0.80877 0.77979 1.90920 1.13181 1.86017 1.57020 1.42187 1.09770 1.02906 1.77159 1.17010 0.97782 0.85380 1.03768 1.20331 0.96280 0.96315 0.98492 1.20893 1.03109 0.94444 1.05446 1.17927 0.92842 0.92650 0.89674 1.19645 0.94876 0.91496 1.47714 0.91338 1.26642 0.95774 1.03980 0.91557 1.69835 1.08561 1.29994 1.38568 0.85232 0.78607 0.75911 0.79750 1.18841 1.19043 1.18682 1.20877 0.98638 0.96429 1.01299 1.20462 1.01027 0.92526 1.00285 0.91563 0.88393 0.91541 0.86907 0.92378 0.87948 0.91250 0.89839 0.90342 0.92713 0.93092 0.94705 0.94257 0.92276 0.75579 0.88313 0.88972 0.90462 0.87496 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 10.16 127.77 1.30 2.38 16 2 N -0.63 -15.26 1.95 -864.90 -1.69 -16.94 16 3 C 0.15 3.10 5.23 86.38 0.45 3.56 16 4 C 0.06 1.08 2.80 45.39 0.13 1.21 16 5 H 0.07 1.08 7.77 -2.39 -0.02 1.06 16 6 C -0.12 -1.72 6.51 32.02 0.21 -1.51 16 7 C -0.13 -2.04 6.94 31.82 0.22 -1.82 16 8 C 0.04 0.88 6.90 86.65 0.60 1.48 16 9 N -0.54 -14.62 3.87 -886.65 -3.43 -18.05 16 10 C 0.04 1.02 8.53 127.69 1.09 2.11 16 11 C 0.70 24.66 5.39 179.06 0.96 25.63 16 12 O -0.59 -26.79 12.85 -3.98 -0.05 -26.84 16 13 N -0.67 -23.76 5.18 -316.78 -1.64 -25.40 16 14 C 0.05 2.51 6.26 38.56 0.24 2.75 16 15 C -0.09 -4.77 8.57 22.13 0.19 -4.58 16 16 C -0.22 -11.98 9.74 22.48 0.22 -11.76 16 17 C 0.07 4.09 5.50 -21.27 -0.12 3.98 16 18 C -0.51 -28.94 9.02 23.39 0.21 -28.73 16 19 H 0.07 3.83 7.85 -2.91 -0.02 3.80 16 20 C 0.03 1.72 5.31 85.24 0.45 2.17 16 21 N -0.84 -45.32 10.97 21.82 0.24 -45.08 16 22 Si 0.98 40.23 29.56 68.60 2.03 42.25 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 24 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 26 C -0.15 -8.21 8.57 22.48 0.19 -8.02 16 27 C -0.12 -5.70 9.90 22.14 0.22 -5.48 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.88 8.07 -2.38 -0.02 0.87 16 30 H 0.07 0.96 6.29 -2.39 -0.02 0.94 16 31 H 0.11 1.45 8.07 -2.39 -0.02 1.44 16 32 H 0.06 1.62 7.37 -2.39 -0.02 1.60 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.19 8.02 -2.38 -0.02 1.17 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.05 1.13 7.58 -2.39 -0.02 1.11 16 39 H 0.03 0.78 8.09 -2.38 -0.02 0.76 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.70 5.23 -2.39 -0.01 1.69 16 42 H 0.41 11.26 6.51 -92.71 -0.60 10.66 16 43 H 0.10 5.04 6.50 -2.91 -0.02 5.02 16 44 H 0.09 4.89 8.06 -2.91 -0.02 4.87 16 45 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 46 H 0.11 5.95 6.46 -2.91 -0.02 5.93 16 47 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -72.89 368.10 2.39 -70.49 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.37 Total: 36.21 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 6.57 Total: -16.64 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -6.52 Total: -105.47 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Total: -72.89 2.39 -70.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421058604.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.665 kcal (2) G-P(sol) polarization free energy of solvation -72.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds